BAC Information

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BAC

Clone NameB6Ng01-112D19
Chromosome10 (Build37)
Map Location 122,714,923 - 122,811,545
singlet/doubletdoublet
Overlap geneAI851790
Upstream geneAvpr1a, Ppm1h, D630033A02Rik, Mon2, Usp15, LOC100042958
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112D19.bB6Ng01-112D19.g
ACCDH918353DH918354
length1,0911,171
definitionDH918353|Mus musculus domesticus DNA, BAC clone: B6Ng01-112D19, 5' end.DH918354|Mus musculus domesticus DNA, BAC clone: B6Ng01-112D19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,714,923 - 122,716,023)(122,810,343 - 122,811,545)
sequence
gaattctctaccggagtaggaagtctctacgaaggccttttaccaaactg
aaggtcagaaataacaggccctacttctgaccttgcaaccagaccgttgt
cagctcttagagagtcaccggacatctctgtcaaatgagacgactggatg
taatgactgcttagacgccacctcacttgagccatgtgtgcctgtgcttc
tattctgtcctggacagatcttgaccactgtccaggctgacttcccgcat
tgtgaaaccaattttgtaagccgcttctatcttagcggaggtatcatttt
gaacatgtttttgggaggcgcagtatgttgtccacaacacctgtttaagt
gtcatgaccaaatcaaactaataagcagacccactaactcctccatttat
aattcttctgcggtagagacctgagacatgctttcttgtagccctcctga
aacacacattaaaaaaacaaacaaacaaacaaacaaacaaacaaaaagta
gaaactctactgtacaacagaatagcagagcttactcctatctaatgcct
acaagttttcagatttttttttttatcccgttattttcctctctcctttt
gagaccctaaaggcagacagttgaatcttcaggtattgtctttgtaaata
aactcttccacagtcttctccatcctttcttaacaatgctggtaatttta
aaaaccagactttttattgttattttaactggcacataatcacacaaatc
tatgattatctgagttattttgatatgagcacacattatataatcaccga
atcagcacaattatatattcatcttaactacttataatttgtagtgagaa
tatttaaaacttcccgttttctagctattttgaaatatctagaacttaat
gctagagaactcactgtactctgaactggacacggaggcttcttatgtag
ctggaacctgtcatggcaatcactccctactccctctctctgctctctgc
tcctacccttctggtctctggtagcactctttgttctgtgaggcagcagt
cttttttttttaaactattaattattttttattacgtattt
gaattctttaaagaaccaaaattattcagtgtcaagttcaataaatcagg
tgcatgataaagttggctaataccatcttgagtcgaaaatgagatttaac
ggcaaaataaagaggcagatgtccttgtaaagaccgtcaagcagctctga
aggcaaagccaagggagcaggggcttcaaagttattcctgagcaactgca
gcaggctgggatctagcagcctctagcagtaactgctgtgaaggttttca
atcaccttgattataaattcagaaaacttcatccctaaaaaagagtcctc
cccagtggatacttcgtgtccttagacagggtgagccactttctccatcc
ttgtcagggtgatgctttcaagctttaaaagaaaaaagagagagagagac
agagcctgctgcatcattgactagggtagctcttaactcttttattaaga
aataatttcagaaagagatcagtttacatttaaattttccaaatatattt
ataacaaaggacacagcaaatagtgaatcttaattatgatcaggcttggt
tttgatttgaatcacatctgtgtacttggtgaatactgagtgcttaattc
tcttccagagactgtcttaaacacactgtgcacaggaagtcactctatcc
ttatttaaaacctcgaaagatacaattacgagcttcactttataagtgaa
ggaggtggaatcagagaaactcggagatgatgaaaattcacagggattga
taggtaagagctatgtgacaagaccttgtgaaactcggtccagaattggc
tctgagctaccgtgtggcactgcttaaagcactggccagttgaccaaacc
agtgggaaaatgtccaccttaaagttaatatcacacttgtagatactagc
aggcttgaaagttcctgggaagggtcatttcctcatattcatattctagc
tctagccattcatccttggtgatacattgatttagaaaggggaaagtatc
acaatttcccttccttagatttgagctgtgtgaaagaagagaaatgggca
agacatactgccactccttaagagatatctccttaagtaatctaaatatt
attctttctttctcatggtaggtatccctttcatcaattttcttgggaga
actgaaggaataggtgaatcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_122714923_122716023
seq2: B6Ng01-112D19.b_46_1136

seq1  GAATTCTCTACCGGAGTAGGAAGTCTCTACGAAGGCCTTTTACCAAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTACCGGAGTAGGAAGTCTCTACGAAGGCCTTTTACCAAACTG  50

seq1  AAGGTCAGAAATAACAGGCCCTACTTCTGACCTTGCAACCAGACCGTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCAGAAATAACAGGCCCTACTTCTGACCTTGCAACCAGACCGTTGT  100

seq1  CAGCTCTTAGAGAGTCACCGGACATCTCTGTCAAATGAGACGACTGGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTTAGAGAGTCACCGGACATCTCTGTCAAATGAGACGACTGGATG  150

seq1  TAATGACTGCTTAGACGCCACCTCACTTGAGCCATGTGTGCCTGTGCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACTGCTTAGACGCCACCTCACTTGAGCCATGTGTGCCTGTGCTTC  200

seq1  TATTCTGTCCTGGACAGATCTTGACCACTGTCCAGGCTGACTTCCCGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGTCCTGGACAGATCTTGACCACTGTCCAGGCTGACTTCCCGCAT  250

seq1  TGTGAAACCAATTTTGTAAGCCGCTTCTATCTTAGCGGAGGTATCATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAACCAATTTTGTAAGCCGCTTCTATCTTAGCGGAGGTATCATTTT  300

seq1  GAACATGTTTTTGGGAGGCGCAGTATGTTGTCCACAACACCTGTTTAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGTTTTTGGGAGGCGCAGTATGTTGTCCACAACACCTGTTTAAGT  350

seq1  GTCATGACCAAATCAAACTAATAAGCAGACCCACTAACTCCTCCATTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGACCAAATCAAACTAATAAGCAGACCCACTAACTCCTCCATTTAT  400

seq1  AATTCTTCTGCGGTAGAGACCTGAGACATGCTTTCTTGTAGCCCTCCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTCTGCGGTAGAGACCTGAGACATGCTTTCTTGTAGCCCTCCTGA  450

seq1  AACACACATTAAAAAAACAAACAAACAAACAAACAAACAAACAAAAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACATTAAAAAAACAAACAAACAAACAAACAAACAAACAAAAAGTA  500

seq1  GAAACTCTACTGTACAACAGAATAGCAGAGCTTACTCCTATCTAATGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCTACTGTACAACAGAATAGCAGAGCTTACTCCTATCTAATGCCT  550

seq1  ACAAGTTTTCAGATTTTTTTTTTTATCCCGTTATTTTCCTCTCTCCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTTTCAGATTTTTTTTTTTATCCCGTTATTTTCCTCTCTCCTTTT  600

seq1  GAGACCCTAAAGGCAGACAGTTGAATCTTCAGGTATTGTCTTTGTAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCTAAAGGCAGACAGTTGAATCTTCAGGTATTGTCTTTGTAAATA  650

seq1  AACTCTTCCACAGTCTTCTCCATCCTTTCTTAACAATGCTGGTAATTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTCCACAGTCTTCTCCATCCTTTCTTAACAATGCTGGTAATTTTA  700

seq1  AAAACCAGACTTTTTATTGTTATTTTAACTGGCACATAATCACACAAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAGACTTTTTATTGTTATTTTAACTGGCACATAATCACACAAATC  750

seq1  TATGATTATCTGAGTTATTTTGATATGAGCACACATTATATAATCACCGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTATCTGAGTTATTTTGATATGAGCACACATTATATAATCACCGA  800

seq1  ATCAGCACAATTATATATTCATCTTAACTACTTATAATTTGTAGTGAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCACAATTATATATTCATCTTAACTACTTATAATTTGTAGTGAGAA  850

seq1  TATTTAAAACTTCCCGTTTTCTAGCTATTTTGAAATATCTAGAACTTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAAAACTTCCCGTTTTCTAGCTATTTTGAAATATCTAGAACTTAAT  900

seq1  GCTAGAGAACTCACTGTACTCTGAAACTGGACACGGAGGCTTCTTATGTA  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GCTAGAGAACTCACTGTACTCTG-AACTGGACACGGAGGCTTCTTATGTA  949

seq1  GCTGGAACCTGTCATGGCCAATCACTCCCTACCTCCCTCCTCTCTGCTCT  1000
      ||||||||||||||||| ||||||||||||| |||||| |||||||||||
seq2  GCTGGAACCTGTCATGG-CAATCACTCCCTA-CTCCCT-CTCTCTGCTCT  996

seq1  CTGCTCCTACCCTTCCTGGTCTCTGGTAGCCACTCTTTGTTCTGTGAGGC  1050
      |||||||||||||| |||||||||||||| ||||||||||||||||||| 
seq2  CTGCTCCTACCCTT-CTGGTCTCTGGTAG-CACTCTTTGTTCTGTGAGG-  1043

seq1  CAGCAGTCCTTTTTTTTTTTAAACTTATTATTATTTTTTTATTACGTATT  1100
      ||||||||  |||||||||||||| ||||| |  ||||||||||||||||
seq2  CAGCAGTC--TTTTTTTTTTAAAC-TATTAATTATTTTTTATTACGTATT  1090

seq1  T  1101
      |
seq2  T  1091

seq1: chr10_122810343_122811545
seq2: B6Ng01-112D19.g_67_1237 (reverse)

seq1  CGATTCACCTCATCTCCTCCCAGTTCCTCCCCACAAGAAAAATTGAATGA  50
      |||||||||| || ||||  ||||| ||||   |||| ||||||| ||| 
seq2  CGATTCACCT-AT-TCCT-TCAGTT-CTCC---CAAG-AAAATTG-ATG-  40

seq1  AAAGGGATAAACTAACAAATGAAGAAAAGAAAAGAAATAAATATTTAGAT  100
      |||||||| | ||| |  ||| |||||   ||||||   |||||||||||
seq2  AAAGGGAT-ACCTACC--ATG-AGAAA--GAAAGAA--TAATATTTAGAT  82

seq1  TACCTTTTAAGGGAGATTATCTCTTAAGGGAGTGGGCAGTATTTGTCTTT  150
      |||   |||| ||||| |||||||||| ||||| |||||||  |||| ||
seq2  TAC---TTAA-GGAGA-TATCTCTTAA-GGAGT-GGCAGTA--TGTC-TT  122

seq1  GCCCATTTCTCCTTCTTTTCACACAGCTCAAATCCTAAGGAAGGGAAATT  200
      |||||||||| |||| ||||||||||||||||| ||||||||||||||||
seq2  GCCCATTTCT-CTTC-TTTCACACAGCTCAAAT-CTAAGGAAGGGAAATT  169

seq1  GTGATACTTTCCCCTTTCTAAAATCAATGTATCACCAAGGATGAATGGCT  250
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTGATACTTTCCCCTTTCT-AAATCAATGTATCACCAAGGATGAATGGCT  218

seq1  AGAGCTAGAATATGAATATGAGGAAATGACCCTTCCCAGGAACTTTCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTAGAATATGAATATGAGGAAATGACCCTTCCCAGGAACTTTCAAG  268

seq1  CCTGCTAGTATCTACAAGTGTGATATTAACTTTAAGGTGGACATTTTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTAGTATCTACAAGTGTGATATTAACTTTAAGGTGGACATTTTCCC  318

seq1  ACTGGTTTGGTCAACTGGCCAGTGCTTTAAGCAGTGCCACACGGTAGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTTGGTCAACTGGCCAGTGCTTTAAGCAGTGCCACACGGTAGCTC  368

seq1  AGAGCCAATTCTGGACCGAGTTTCACAAGGTCTTGTCACATAGCTCTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCAATTCTGGACCGAGTTTCACAAGGTCTTGTCACATAGCTCTTAC  418

seq1  CTATCAATCCCTGTGAATTTTCATCATCTCCGAGTTTCTCTGATTCCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAATCCCTGTGAATTTTCATCATCTCCGAGTTTCTCTGATTCCACC  468

seq1  TCCTTCACTTATAAAGTGAAGCTCGTAATTGTATCTTTCGAGGTTTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCACTTATAAAGTGAAGCTCGTAATTGTATCTTTCGAGGTTTTAAA  518

seq1  TAAGGATAGAGTGACTTCCTGTGCACAGTGTGTTTAAGACAGTCTCTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATAGAGTGACTTCCTGTGCACAGTGTGTTTAAGACAGTCTCTGGA  568

seq1  AGAGAATTAAGCACTCAGTATTCACCAAGTACACAGATGTGATTCAAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATTAAGCACTCAGTATTCACCAAGTACACAGATGTGATTCAAATC  618

seq1  AAAACCAAGCCTGATCATAATTAAGATTCACTATTTGCTGTGTCCTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAGCCTGATCATAATTAAGATTCACTATTTGCTGTGTCCTTTGT  668

seq1  TATAAATATATTTGGAAAATTTAAATGTAAACTGATCTCTTTCTGAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATATATTTGGAAAATTTAAATGTAAACTGATCTCTTTCTGAAATT  718

seq1  ATTTCTTAATAAAAGAGTTAAGAGCTACCCTAGTCAATGATGCAGCAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTAATAAAAGAGTTAAGAGCTACCCTAGTCAATGATGCAGCAGGC  768

seq1  TCTGTCTCTCTCTCTCTTTTTTCTTTTAAAGCTTGAAAGCATCACCCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTCTCTCTCTTTTTTCTTTTAAAGCTTGAAAGCATCACCCTGA  818

seq1  CAAGGATGGAGAAAGTGGCTCACCCTGTCTAAGGACACGAAGTATCCACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATGGAGAAAGTGGCTCACCCTGTCTAAGGACACGAAGTATCCACT  868

seq1  GGGGAGGACTCTTTTTTAGGGATGAAGTTTTCTGAATTTATAATCAAGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGACTCTTTTTTAGGGATGAAGTTTTCTGAATTTATAATCAAGGT  918

seq1  GATTGAAAACCTTCACAGCAGTTACTGCTAGAGGCTGCTAGATCCCAGCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAAAACCTTCACAGCAGTTACTGCTAGAGGCTGCTAGATCCCAGCC  968

seq1  TGCTGCAGTTGCTCAGGAATAACTTTGAAGCCCCTGCTCCCTTGGCTTTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCAGTTGCTCAGGAATAACTTTGAAGCCCCTGCTCCCTTGGCTTTG  1018

seq1  CCTTCAGAGCTGCTTGACGGTCTTTACAAGGACATCTGCCTCTTTATTTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGAGCTGCTTGACGGTCTTTACAAGGACATCTGCCTCTTTATTTT  1068

seq1  GCCGTTAAATCTCATTTTCGACTCAAGATGGTATTAGCCAACTTTATCAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTTAAATCTCATTTTCGACTCAAGATGGTATTAGCCAACTTTATCAT  1118

seq1  GCACCTGATTTATTGAACTTGACACTGAATAATTTTGGTTCTTTAAAGAA  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGATTTATTGAACTTGACACTGAATAATTTTGGTTCTTTAAAGAA  1168

seq1  TTC  1203
      |||
seq2  TTC  1171