BAC Information

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BAC

Clone NameB6Ng01-112P04
Chromosome11 (Build37)10 (Build37)
Map Location 99,554,162 - 99,554,67637,510,448 - 37,511,571
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePsmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4, Tns4, Ccr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922
Downstream geneLOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112P04.bB6Ng01-112P04.g
ACCDH918872DH918873
length9691,106
definitionDH918872|Mus musculus domesticus DNA, BAC clone: B6Ng01-112P04, 5' end.DH918873|Mus musculus domesticus DNA, BAC clone: B6Ng01-112P04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(99,554,162 - 99,554,676)(37,510,448 - 37,511,571)
sequence
gaattccattcttctcccacctctgtccaccctaatcagacctacacata
ctgaaacatacatgttagcttctatttccccgctcatcttctctgctctc
tgagtcctctgggacacaccaagctgctctgagcatcttgctatcccagc
tagacatcaattccatccacatttctctgctcaccttcatcagttattct
agtccagtactgtacaggttagcttctgttcctccactcatcttccctgc
tccctgagtactcttacgcacaaacattagtaaatgaaacattgttaact
cttaaattgcaaaaaaaaaaaaaaacccaccaaaaacaacaacaacaaca
acaacacaaaaaccaaaagccatgcagtgatggcgcacatcttcaatcca
agcacttgggaggcagaggcaggcagatttctgagttcgaggtcagcctg
gtctacagagtgagttccaggacagccatggctacacagaaaaaccctgt
ctcaagaaaaacaacaacaacaaaacactgaaacaaaagaaaaacaaaag
tcttaaattgtacatcaagccatatacattaaggatgggagacttcacca
ccccactcccactaatttactggtcatccagacaaaaactaaacagagaa
gtaatgaaacattcagagattatgaatcagatggacctagcagacatcta
aaatatatttcacccaaacacaaaagaatacagcttcttctcagcacctc
aaaaatccttcttcagaattgaccatatagtgtgtcacaatgcaaggctc
aacagatattagaaaattgaagaatctaattgaagtatcaccttgtattg
tatcagagtaccatggaattaaagctggacttcaacaacaacagaaaaaa
agcaaaaaagctcacacaatcatggacattgaacaactctctactcaatg
atcgctgtgtcaggaaaaa
gaattccctcccttcccttatgtttaaaccatggttctcttgtttctcta
taaaactatcttcttcctttgaagacatcaccatagagtattattaaaat
ttgtgttaaattggtgtgcaattcaattatttctagaatgaggaacttga
aaatagaagttgaatttttttatgttattgacatgatgaaaaggaaatta
tattttttaaacaattatgtcattgaactctgaagggactgatgaatatt
agaaatagatgctctgttgtttgtgactagaaatattcaaatgttccatg
aagctattctttgtcatttggactttatttgacttcgacattttatttta
gtatcagaggctgttcttttctcagtagtctaaaaggataaaagcagtgt
tttatgttcccacattatcatgtcatcaggaagagttaaagacttacttt
attaaaaacattaggaggttaaattattttaccatggaaatatatcaaaa
gtgaattatacatatagaaggtacattttacatttcacctcttgttcaaa
gattcagtatgaggacaattattcaggttataattaaatattggcatata
tttcaagtgatatatctctatctatctatctatctatctatctatctatc
tatctatctatcaatcatctatctatctatctatctatctatctatctat
ctatctatctaatcacttgaaataaagacagagactttaatgaggttgat
gatcttggcatgatctaactatgcctcccattccgtgctgtgtaacaagg
tatctgccagtcttcttgtaacttctgagcatttaagtgtaattcgtgtt
agtgaggcattgggattctatatttatccaattttacaaactttaaattt
aaatttaacaatggacatgacatgcaatttaatgattagagagattgcaa
gtttgttcagaacaagttgggcatataacttagtgtttcactatataatt
tataaaatttaaagaagctagatttcaataaaaaccagttcctgcttgag
ttcatgtaggtttaaatggatatggatttcaattgagtagacaaggaaat
gataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_99554162_99554676
seq2: B6Ng01-112P04.b_360_524

seq1  AAAAAAAAAAAAACCCTCAAAGAACAAAAACCAAAATCTTTCAGTGCTGT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTGATGTATGATGGTGAAATGTTTTTTATTTCCACTCAATACTCTGACAC  100
                                                        
seq2  --------------------------------------------------  0

seq1  CAGTATTTCAAATTAAAATGGGCATGATATTGAAATCAATTTGGTGAAAC  150
                                                        
seq2  --------------------------------------------------  0

seq1  ACTAGCTTGCATACATTACAAAGTAGAAAGATGGCCAATGATCATTCACC  200
                                                        
seq2  --------------------------------------------------  0

seq1  ACATGTGTGTGAAGAAAATTCAGAGGTGTCAACTCAACGTGGAGCTCTCT  250
                                                        
seq2  --------------------------------------------------  0

seq1  ACACATTAAAATAATGTTTTGAATGACAGTAATAATGAAATGAGGATTGT  300
                                                        
seq2  --------------------------------------------------  0

seq1  GGCATCATGGATTTTGTGATCTCTGGTAGTACACACAGTACTGAGGTGGG  350
                                      | | |  |          
seq2  --------------------------------AAAAAAAA---------A  9

seq1  AAAGGCCAGCTTAGAC-ACTATAGTTTAAACTGAGAAGAATTAAGAATGG  399
      |||  ||| |  | || || | |     |||  |  | ||  |  ||   
seq2  AAAACCCACCAAAAACAACAACAACAACAAC--AACACAAAAACCAA---  54

seq1  TTTTGGCAGCCA-GGTGCGGTAGCGCACACCTTTAATCCCAGCACTTGGG  448
             ||||| |  | | | ||||||| ||| ||||| ||||||||||
seq2  ------AAGCCATGCAGTGATGGCGCACATCTTCAATCCAAGCACTTGGG  98

seq1  AGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAG  498
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGTCAGCCTGGTCTACAGAG  148

seq1  TGAGTTCCAGGACAGCC  515
      |||||||||||||||||
seq2  TGAGTTCCAGGACAGCC  165

seq1: chr10_37510448_37511571
seq2: B6Ng01-112P04.g_69_1174

seq1  GAATTCCCTCCCTTCCCTTATGTTTAAACCATGGTTCTCTTGTTTCTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCCCTTCCCTTATGTTTAAACCATGGTTCTCTTGTTTCTCTA  50

seq1  TAAAACTATCTTCTTCCTTTGAAGACATCACCATAGAGTATTATTAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTATCTTCTTCCTTTGAAGACATCACCATAGAGTATTATTAAAAT  100

seq1  TTGTGTTAAATTGGTGTGCAATTCAATTATTTCTAGAATGAGGAACTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTAAATTGGTGTGCAATTCAATTATTTCTAGAATGAGGAACTTGA  150

seq1  AAATAGAAGTTGAATTTTTTTATGTTATTGACATGATGAAAAGGAAATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAAGTTGAATTTTTTTATGTTATTGACATGATGAAAAGGAAATTA  200

seq1  TATTTTTTAAACAATTATGTCATTGAACTCTGAAGGGACTGATGAATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTAAACAATTATGTCATTGAACTCTGAAGGGACTGATGAATATT  250

seq1  AGAAATAGATGCTCTGTTGTTTGTGACTAGAAATATTCAAATGTTCCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAGATGCTCTGTTGTTTGTGACTAGAAATATTCAAATGTTCCATG  300

seq1  AAGCTATTCTTTGTCATTTGGACTTTATTTGACTTCGACATTTTATTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATTCTTTGTCATTTGGACTTTATTTGACTTCGACATTTTATTTTA  350

seq1  GTATCAGAGGCTGTTCTTTTCTCAGTAGTCTAAAAGGATAAAAGCAGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGAGGCTGTTCTTTTCTCAGTAGTCTAAAAGGATAAAAGCAGTGT  400

seq1  TTTATGTTCCCACATTATCATGTCATCAGGAAGAGTTAAAGACTTACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTTCCCACATTATCATGTCATCAGGAAGAGTTAAAGACTTACTTT  450

seq1  ATTAAAAACATTAGGAGGTTAAATTATTTTACCATGGAAATATATCAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAACATTAGGAGGTTAAATTATTTTACCATGGAAATATATCAAAA  500

seq1  GTGAATTATACATATAGAAGGTACATTTTACATTTCACCTCTTGTTCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTATACATATAGAAGGTACATTTTACATTTCACCTCTTGTTCAAA  550

seq1  GATTCAGTATGAGGACAATTATTCAGGTTATAATTAAATATTGGCATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGTATGAGGACAATTATTCAGGTTATAATTAAATATTGGCATATA  600

seq1  TTTCAAGTGATATATCTCTATCTATCTATCTATCTATCTATCTATCTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGTGATATATCTCTATCTATCTATCTATCTATCTATCTATCTATC  650

seq1  TATCTATCTATCAATCATCTATCTATCTATCTATCTATCTATCTATCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTATCAATCATCTATCTATCTATCTATCTATCTATCTATCTAT  700

seq1  CTATCTATCTAATCACTTGAAATAAAGACAGAGACTTTAATGAGGTTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATCTAATCACTTGAAATAAAGACAGAGACTTTAATGAGGTTGAT  750

seq1  GATCTTGGCATGATCTAACTATGCCTCCCATTCCGTGCTGTGTAACAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTGGCATGATCTAACTATGCCTCCCATTCCGTGCTGTGTAACAAGG  800

seq1  TATCTGCCAGTCTTCTTGTAACTTCTGAGCATTTAAGTGTAATTCGTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCCAGTCTTCTTGTAACTTCTGAGCATTTAAGTGTAATTCGTGTT  850

seq1  AGTGAGGCATTGGGATTCTATATTTATCCAATTTTACAAACTTTAAATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGCATTGGGATTCTATATTTATCCAATTTTACAAACTTTAAATTT  900

seq1  AAATTTAACAATGGACATGACATGCAATTTAATGATTAGAGAAGATTGCA  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAATTTAACAATGGACATGACATGCAATTTAATGATTAGAG-AGATTGCA  949

seq1  AGTTTGTTCAGAACAAGTTGGGCATATAACTTTAGTGTTTCAACTATATA  1000
      |||||||||||||||||||||||||||||| |||||||||| ||||||||
seq2  AGTTTGTTCAGAACAAGTTGGGCATATAAC-TTAGTGTTTC-ACTATATA  997

seq1  ATTTATAAAATTTAAAGAAGGCTAAGAATTTCCAATAAAAACCAAGTTTC  1050
      ||||||||||||||||||| ||| |||  || ||||||||||||   |||
seq2  ATTTATAAAATTTAAAGAA-GCT-AGA--TTTCAATAAAAACCA--GTTC  1041

seq1  CTGCTTGAGGTTCATTGTAAGTTTAAAATGGATATTGGATTTCAAATAGA  1100
      |||||||| ||||| |||| |||| ||||||||| |||||||| ||| ||
seq2  CTGCTTGA-GTTCA-TGTAGGTTT-AAATGGATA-TGGATTTC-AATTGA  1086

seq1  GTAGGAAACAAAAGAAATGATAAA  1124
      ||||   || || |||||||||||
seq2  GTAG---AC-AAGGAAATGATAAA  1106