BAC Information

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BAC

Clone NameB6Ng01-112P11
Chromosome10 (Build37)
Map Location 93,615,711 - 93,734,168
singlet/doubletdoublet
Overlap geneNr2c1, Ndufa12
Upstream geneEG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2, Vezt, Fgd6
Downstream geneEG215472, LOC100041955, Tmcc3, EG667315, 4921537D05Rik, Plxnc1, Cradd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112P11.bB6Ng01-112P11.g
ACCDH918886DH918887
length8451,135
definitionDH918886|Mus musculus domesticus DNA, BAC clone: B6Ng01-112P11, 5' end.DH918887|Mus musculus domesticus DNA, BAC clone: B6Ng01-112P11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,733,324 - 93,734,168)(93,615,711 - 93,616,857)
sequence
gaattctgcagagtccgtggggggcatctcaacaaatctgcagcagacaa
aagaccctttggccactcatttgcagcttccgagtctgtgaagccggggc
atagtggcttcaagaattataataaactactgtgtggaaagcgattcaaa
taaattaccgtgtggagagtaacacggtctcagggaatccacccatcgtg
tgtggggaaggcatggtggcaggtagtctccgggcaatggaaatttgcag
cggcgggttgttccgtgggactgatgggaaagcagaggtcgtttgggtca
gaagcatggccaggctaacagcaaacccgccccatctagttaactcatct
cctttagcatcaccagcttcaaaactggcacccctagctgggagcctcgt
gtttaaacacgtgaacaggagggtcacatgtcacattcagagcacagcaa
atacaactgtctcaagagctgtagggcctcctgctttgctacaggtttat
tgctagcatgatttgtgctagaaaaaacaggttcggcagagtgcatctgg
gctagatgggtgtgccgtttatttcccttggacaccctaaattcttccct
atctttgggtcactgcatctgttcacccattactagaacactctgtccca
gtaccttaactcatcattcaagctctggtgtagatgtcaggaggtcttcc
ctgatccccatctccctgaggaggtgtccctgcaaggcactccgtgagtg
ttttctgtcactgcttaccatttttaccttcctcctcctaaacacgacgt
gaattcatcaggatcagggctttgggtttgtctcactcacagctg
gaattccagaacagccagggctacacaaagaaaccatatcttgaaaaacc
catacatacattcatacatagtggagtggctgttcctggctgtcagcttg
actatatctggaatgaactacaatccagaattggaaggctcatctgtgat
cctgatcttgaggctgggagatacaagtttctgacctggatcttggtatg
gagatcttgaggcatagtggctatgaatcccagcagactaaggcagggag
agagctctgagttcgaggtcagcctgggacaaagaaagtctcagatctag
gtgtggtagtgcacacctttaatctgggccacacctactgctggagacct
acataaggactttggaagaaggaagatttactctctgtctttgcctgtgt
gccctgtgggactgagcaactgctagatccttggacttttgttcacagct
gctgctgacctttgttggggagttggactgcagactataagtcatcaaca
aattccattacaatatagagactacccataagttctgtgactctcagaga
accttgactaatatacattcttaatttcaataaaaacttaaccatatgtg
aatatgttgggggtagagggtacatataagtgcaggtgaccatgcagacc
agatgtcagatctctggagctggagtgacagaagatggtgagctatctga
agtgggtgctgggaactgaactctggtcttctgtaagaacagcatgttgg
taactgccaagccatccttccatacccctcaatagaagttttttaaaaca
agcaataccttatactatctggtaatgtattcatcttactttttctattg
cggtgacaaccatgaccaaggcaacttagaaagcatgtaatttgggggtt
cacattttagagaactaaagtccatgaccatcctggcagggagtatggca
gatgtggtactggggttagtgccttgcagtttacttgtaagaaagcaaca
gaggcagaagagagtgcaacatgagagcttacttgtaaatgcatgagctt
tgaacgcaaaaccttcctagagacacacttcttcacaggatcacatctgc
taatctatcaatcactcaactgggacaagtatcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_93733324_93734168
seq2: B6Ng01-112P11.b_39_883 (reverse)

seq1  CAGCTGTGAGTGAGACAAA-CCAAAGCCCTGATCCTGATGGAATTCACGT  49
      ||||||||||||||||||| ||||||||||||||||||| ||||||||||
seq2  CAGCTGTGAGTGAGACAAACCCAAAGCCCTGATCCTGAT-GAATTCACGT  49

seq1  CGTGTTTAGGAGGAGGAAGGTAAAAATGGTAAGCAGTGACAGAAAACACT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTTAGGAGGAGGAAGGTAAAAATGGTAAGCAGTGACAGAAAACACT  99

seq1  CACGGAGTGCCTTGCAGGGACACCTCCTCAGGGAGATGGGGATCAGGGAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGAGTGCCTTGCAGGGACACCTCCTCAGGGAGATGGGGATCAGGGAA  149

seq1  GACCTCCTGACATCTACACCAGAGCTTGAATGATGAGTTAAGGTACTGGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCCTGACATCTACACCAGAGCTTGAATGATGAGTTAAGGTACTGGG  199

seq1  ACAGAGTGTTCTAGTAATGGGTGAACAGATGCAGTGACCCAAAGATAGGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTGTTCTAGTAATGGGTGAACAGATGCAGTGACCCAAAGATAGGG  249

seq1  AAGAATTTAGGGTGTCCAAGGGAAATAAACGGCACACCCATCTAGCCCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTAGGGTGTCCAAGGGAAATAAACGGCACACCCATCTAGCCCAG  299

seq1  ATGCACTCTGCCGAACCTGTTTTTTCTAGCACAAATCATGCTAGCAATAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTCTGCCGAACCTGTTTTTTCTAGCACAAATCATGCTAGCAATAA  349

seq1  ACCTGTAGCAAAGCAGGAGGCCCTACAGCTCTTGAGACAGTTGTATTTGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTAGCAAAGCAGGAGGCCCTACAGCTCTTGAGACAGTTGTATTTGC  399

seq1  TGTGCTCTGAATGTGACATGTGACCCTCCTGTTCACGTGTTTAAACACGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCTGAATGTGACATGTGACCCTCCTGTTCACGTGTTTAAACACGA  449

seq1  GGCTCCCAGCTAGGGGTGCCAGTTTTGAAGCTGGTGATGCTAAAGGAGAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCAGCTAGGGGTGCCAGTTTTGAAGCTGGTGATGCTAAAGGAGAT  499

seq1  GAGTTAACTAGATGGGGCGGGTTTGCTGTTAGCCTGGCCATGCTTCTGAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAACTAGATGGGGCGGGTTTGCTGTTAGCCTGGCCATGCTTCTGAC  549

seq1  CCAAACGACCTCTGCTTTCCCATCAGTCCCACGGAACAACCCGCCGCTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACGACCTCTGCTTTCCCATCAGTCCCACGGAACAACCCGCCGCTGC  599

seq1  AAATTTCCATTGCCCGGAGACTACCTGCCACCATGCCTTCCCCACACACG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCCATTGCCCGGAGACTACCTGCCACCATGCCTTCCCCACACACG  649

seq1  ATGGGTGGATTCCCTGAGACCGTGTTACTCTCCACACGGTAATTTATTTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTGGATTCCCTGAGACCGTGTTACTCTCCACACGGTAATTTATTTG  699

seq1  AATCGCTTTCCACACAGTAGTTTATTATAATTCTTGAAGCCACTATGCCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGCTTTCCACACAGTAGTTTATTATAATTCTTGAAGCCACTATGCCC  749

seq1  CGGCTTCACAGACTCGGAAGCTGCAAATGAGTGGCCAAAGGGTCTTTTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTTCACAGACTCGGAAGCTGCAAATGAGTGGCCAAAGGGTCTTTTGT  799

seq1  CTGCTGCAGATTTGTTGAGATGCCCCCCACGGACTCTGCAGAATTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCAGATTTGTTGAGATGCCCCCCACGGACTCTGCAGAATTC  845

seq1: chr10_93615711_93616857
seq2: B6Ng01-112P11.g_68_1202

seq1  GAATTCCAGAACAGCCAGGGCTACACAAAGAAACCATATCTTGAAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAACAGCCAGGGCTACACAAAGAAACCATATCTTGAAAAACC  50

seq1  CATACATACATTCATACATAGTGGAGTGGCTGTTCCTGGCTGTCAGCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATACATTCATACATAGTGGAGTGGCTGTTCCTGGCTGTCAGCTTG  100

seq1  ACTATATCTGGAATGAACTACAATCCAGAATTGGAAGGCTCATCTGTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATCTGGAATGAACTACAATCCAGAATTGGAAGGCTCATCTGTGAT  150

seq1  CCTGATCTTGAGGCTGGGAGATACAAGTTTCTGACCTGGATCTTGGTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATCTTGAGGCTGGGAGATACAAGTTTCTGACCTGGATCTTGGTATG  200

seq1  GAGATCTTGAGGCATAGTGGCTATGAATCCCAGCAGACTAAGGCAGGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTTGAGGCATAGTGGCTATGAATCCCAGCAGACTAAGGCAGGGAG  250

seq1  AGAGCTCTGAGTTCGAGGTCAGCCTGGGACAAAGAAAGTCTCAGATCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCTGAGTTCGAGGTCAGCCTGGGACAAAGAAAGTCTCAGATCTAG  300

seq1  GTGTGGTAGTGCACACCTTTAATCTGGGCCACACCTACTGCTGGAGACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTAGTGCACACCTTTAATCTGGGCCACACCTACTGCTGGAGACCT  350

seq1  ACATAAGGACTTTGGAAGAAGGAAGATTTACTCTCTGTCTTTGCCTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAGGACTTTGGAAGAAGGAAGATTTACTCTCTGTCTTTGCCTGTGT  400

seq1  GCCCTGTGGGACTGAGCAACTGCTAGATCCTTGGACTTTTGTTCACAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGTGGGACTGAGCAACTGCTAGATCCTTGGACTTTTGTTCACAGCT  450

seq1  GCTGCTGACCTTTGTTGGGGAGTTGGACTGCAGACTATAAGTCATCAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGACCTTTGTTGGGGAGTTGGACTGCAGACTATAAGTCATCAACA  500

seq1  AATTCCATTACAATATAGAGACTACCCATAAGTTCTGTGACTCTCAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCATTACAATATAGAGACTACCCATAAGTTCTGTGACTCTCAGAGA  550

seq1  ACCTTGACTAATATACATTCTTAATTTCAATAAAAACTTAACCATATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGACTAATATACATTCTTAATTTCAATAAAAACTTAACCATATGTG  600

seq1  AATATGTTGGGGGTAGAGGGTACATATAAGTGCAGGTGACCATGCAGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTTGGGGGTAGAGGGTACATATAAGTGCAGGTGACCATGCAGACC  650

seq1  AGATGTCAGATCTCTGGAGCTGGAGTGACAGAAGATGGTGAGCTATCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCAGATCTCTGGAGCTGGAGTGACAGAAGATGGTGAGCTATCTGA  700

seq1  AGTGGGTGCTGGGAACTGAACTCTGGTCTTCTGTAAGAACAGCATGTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTGCTGGGAACTGAACTCTGGTCTTCTGTAAGAACAGCATGTTGG  750

seq1  TAACTGCCAAGCCATCCTTCCATACCCCTCAATAGAAG-TTTTTAAAACA  799
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TAACTGCCAAGCCATCCTTCCATACCCCTCAATAGAAGTTTTTTAAAACA  800

seq1  AGCAATACCTTATACTATCTGGTAATGTATTCATCTTAC-TTTTCTATTG  848
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGCAATACCTTATACTATCTGGTAATGTATTCATCTTACTTTTTCTATTG  850

seq1  CGGTGACAACCATGACCAAGGCAACTTAGAAAGCATGTAATTTGGGGGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGACAACCATGACCAAGGCAACTTAGAAAGCATGTAATTTGGGGGTT  900

seq1  CACAATTTTAGAGAACTAAAGTCCATGACCATCCTGGCAGGGAGTATGGC  948
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAC-ATTTTAGAGAACTAAAGTCCATGACCATCCTGGCAGGGAGTATGGC  949

seq1  AGATGTGGTACTGGGG-TAGTGCCTGGCAGTTTACATGTTAAGAAGGCAA  997
      |||||||||||||||| |||||||| ||||||||| || |||||| ||||
seq2  AGATGTGGTACTGGGGTTAGTGCCTTGCAGTTTACTTG-TAAGAAAGCAA  998

seq1  CCAGAGGCAG-AGAGAGTGCACACATGAGAGCTAACTGGAAATTGCATGA  1046
       ||||||||| |||||||||| ||||||||||| ||| | || |||||||
seq2  -CAGAGGCAGAAGAGAGTGCA-ACATGAGAGCTTACTTGTAAATGCATGA  1046

seq1  GCTTTTGAAACCTCAAAACCTTCCCCAGAGACACACCTCCTCCAACAAGA  1096
      || ||||||  | ||||||||| || |||||||||| || ||  ||| ||
seq2  GC-TTTGAA--CGCAAAACCTT-CCTAGAGACACACTTCTTC--ACAGGA  1090

seq1  TCACATCTGCTAATCTATCCAAACAACTCCAACTGGGGACCAAGTAATCA  1146
      |||||||||||||||||||  ||  ||| ||||||||   ||||| ||||
seq2  TCACATCTGCTAATCTATC--AATCACT-CAACTGGG--ACAAGT-ATCA  1134

seq1  A  1147
      |
seq2  A  1135