BAC Information

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BAC

Clone NameB6Ng01-113E23
Chromosome10 (Build37)
Map Location 88,469,002 - 88,558,879
singlet/doubletdoublet
Overlap geneTmem16d
Upstream genePmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20, Slc5a8
Downstream geneGas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, Anks1b, LOC100043039
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113E23.bB6Ng01-113E23.g
ACCDH919138DH919139
length804253
definitionDH919138|Mus musculus domesticus DNA, BAC clone: B6Ng01-113E23, 5' end.DH919139|Mus musculus domesticus DNA, BAC clone: B6Ng01-113E23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,469,002 - 88,469,803)(88,558,627 - 88,558,879)
sequence
gaattccacaggcactgtggtttcttctccaaggactacagttatacaga
gcctgttgagtgtgtgcttccttcctgtaaaatgagatcaacctggcgtg
gcttggagacctacacattcatgcttgagagcttaactactaaaatacaa
taaagtaactattatccacatggctatcaggcagtgaagaactgtgacaa
ccaggagagaaatgaacaaactgctcagggctgctgcatcagctcattgc
ttagagtcactgagacactgtttaggaaaagaggaccaagataatgtgtc
agggagatggacgttgaagtgaggtaatatctaggaagggccacattaag
aggatttgagtagaaatagtgtcttttggacatggcagctttggttgcct
atacaagtcctgcatatgatcaagctggccaatgttctagcatggaaggg
gaagtggcctaacatccccaccccttaccgaggtgccactgatgattaat
ggtttctgggaaagagagtcagttttctttaaaggtgtgacctctcatag
gccatccagtgctagcggatgacaccataccttatgagtatatatatgca
gcccaaaatgggcttaatggacagagagattttaaagaagaaataaaaaa
tggctaagctatatctcagaagccttcatcattccttaacaaagtcagaa
tgtgcaagtgacaacaactttcagatttcatcttacccaagctagaatgg
ctaagattaccaaataaccagcaattaaggctggtaagaaaggtgggggg
tggg
ctctttagctgctgaacaagacagagacacagagaagttcagtagcttat
gaggatcagagatctgggaggaggtagtgtggatcacagaactggtggga
agtagtgtggattgcagagctagtacggggtagtgtgggtcacagagctg
gtagagggtagtgtgggtcacagaactggtgggaagtagtgtggattgca
gagctagtagggagtagtgtgggtcacagagctggtgggaagtagtgtgg
gtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_88469002_88469803
seq2: B6Ng01-113E23.b_50_853

seq1  GAATTCCACAGGCACTGTGGTTTCTTCTCCAAGGACTACAGTTATACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGGCACTGTGGTTTCTTCTCCAAGGACTACAGTTATACAGA  50

seq1  GCCTGTTGAGTGTGTGCTTCCTTCCTGTAAAATGAGATCAACCTGGCGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTGAGTGTGTGCTTCCTTCCTGTAAAATGAGATCAACCTGGCGTG  100

seq1  GCTTGGAGACCTACACATTCATGCTTGAGAGCTTAACTACTAAAATACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGAGACCTACACATTCATGCTTGAGAGCTTAACTACTAAAATACAA  150

seq1  TAAAGTAACTATTATCCACATGGCTATCAGGCAGTGAAGAACTGTGACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTAACTATTATCCACATGGCTATCAGGCAGTGAAGAACTGTGACAA  200

seq1  CCAGGAGAGAAATGAACAAACTGCTCAGGGCTGCTGCATCAGCTCATTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGAGAAATGAACAAACTGCTCAGGGCTGCTGCATCAGCTCATTGC  250

seq1  TTAGAGTCACTGAGACACTGTTTAGGAAAAGAGGACCAAGATAATGTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTCACTGAGACACTGTTTAGGAAAAGAGGACCAAGATAATGTGTC  300

seq1  AGGGAGATGGACGTTGAAGTGAGGTAATATCTAGGAAGGGCCACATTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGATGGACGTTGAAGTGAGGTAATATCTAGGAAGGGCCACATTAAG  350

seq1  AGGATTTGAGTAGAAATAGTGTCTTTTGGACATGGCAGCTTTGGTTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTGAGTAGAAATAGTGTCTTTTGGACATGGCAGCTTTGGTTGCCT  400

seq1  ATACAAGTCCTGCATATGATCAAGCTGGCCAATGTTCTAGCATGGAAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGTCCTGCATATGATCAAGCTGGCCAATGTTCTAGCATGGAAGGG  450

seq1  GAAGTGGCCTAACATCCCCACCCCTTACCGAGGTGCCACTGATGATTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGCCTAACATCCCCACCCCTTACCGAGGTGCCACTGATGATTAAT  500

seq1  GGTTTCTGGGAAAGAGAGTCAGTTTTCTTTAAAGGTGTGACCTCTCATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTGGGAAAGAGAGTCAGTTTTCTTTAAAGGTGTGACCTCTCATAG  550

seq1  GCCATCCAGTGCTAGCGGATGACACCATACC-TATGAGTATATATAGGCA  599
      ||||||||||||||||||||||||||||||| |||||||||||||| |||
seq2  GCCATCCAGTGCTAGCGGATGACACCATACCTTATGAGTATATATATGCA  600

seq1  GCCCAAAATGGGCTTAATGGACAGAGAGATTTTAAAGAAGAAATAAAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAAATGGGCTTAATGGACAGAGAGATTTTAAAGAAGAAATAAAAAA  650

seq1  TGGCTAAGCTATATCTCAGAAGCCTTCATCA-TCCTTAACAAAGTCAGAA  698
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGGCTAAGCTATATCTCAGAAGCCTTCATCATTCCTTAACAAAGTCAGAA  700

seq1  TGTGCAAGTGACAACAACTTTCAGATTTCATCTTACCCAAGCTAGAATGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAAGTGACAACAACTTTCAGATTTCATCTTACCCAAGCTAGAATGG  750

seq1  CTAAGATTAACCAAATAACCAGCAATAAAGGCTGGTAAGAAGGGT-GGGG  797
      |||||||| ||||||||||||||||| |||||||||||||| ||| ||||
seq2  CTAAGATT-ACCAAATAACCAGCAATTAAGGCTGGTAAGAAAGGTGGGGG  799

seq1  GTGGG  802
      |||||
seq2  GTGGG  804

seq1: chr10_88558627_88558879
seq2: B6Ng01-113E23.g_75_327 (reverse)

seq1  GACCCACACTACTTCCCACCAGCTCTGTGACCCACACTACTCCCTACTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCACACTACTTCCCACCAGCTCTGTGACCCACACTACTCCCTACTAG  50

seq1  CTCTGCAATCCACACTACTTCCCACCAGTTCTGTGACCCACACTACCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCAATCCACACTACTTCCCACCAGTTCTGTGACCCACACTACCCTC  100

seq1  TACCAGCTCTGTGACCCACACTACCCCGTACTAGCTCTGCAATCCACACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGCTCTGTGACCCACACTACCCCGTACTAGCTCTGCAATCCACACT  150

seq1  ACTTCCCACCAGTTCTGTGATCCACACTACCTCCTCCCAGATCTCTGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCACCAGTTCTGTGATCCACACTACCTCCTCCCAGATCTCTGATC  200

seq1  CTCATAAGCTACTGAACTTCTCTGTGTCTCTGTCTTGTTCAGCAGCTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAAGCTACTGAACTTCTCTGTGTCTCTGTCTTGTTCAGCAGCTAAA  250

seq1  GAG  253
      |||
seq2  GAG  253