BAC Information

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BAC

Clone NameB6Ng01-113K24
Chromosome10 (Build37)
Map Location 63,467,996 - 63,611,031
singlet/doubletdoublet
Overlap geneCtnna3, Lrrtm3
Upstream geneRufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn, 1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113K24.bB6Ng01-113K24.g
ACCDH919416DH919417
length1,029921
definitionDH919416|Mus musculus domesticus DNA, BAC clone: B6Ng01-113K24, 5' end.DH919417|Mus musculus domesticus DNA, BAC clone: B6Ng01-113K24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,610,027 - 63,611,031)(63,467,996 - 63,468,906)
sequence
gaattccactctgccatttgtaaatcggagatgacaccattgtgcaggtg
aactgaacaatccacaccagcgttagtgtttatgtcctgggtgccattct
ctatgggtgtaacttggccttagaggatgaaaatccagaccagctaaagc
cacgatgccttgtctcttttgtgttctgtgagatgcctgttctagccatg
cccatcagtgggaacacatcaagagtatcagtagacaaaataaacacaac
gctctgaacatgagctacgattcagccctgtctttttgaagtcaatattt
ttgagcgtggaaatgtgcatttacatttcaaaagagtagttcagattctc
cttctccgtctctccacactcccaccacacaccaatttctcactgttgga
aatcaagccaaggcattatcaaacagtcttttaattctgtaagaagagtg
acacgctttaaaatagtctgcagtttgggatttgaaagttaatatgtagt
acctgtactcactaagaactgaatctcctcaataaagtgaaaatattgag
agtttatgataacaatggtcattaacggttctccctaacaggcttctgta
ttcaggatttttatatcaaagaacttaaaacatggagggtagagaaaacc
ccagattcacttgatatttatgtcacatagggatcctaatagtttaatat
atttatattttttattattttttatattatatcggatttggtttgctggg
tagctaggtggatagatgggtaccacatagatacacaggtgatgatgaaa
tacataaaaagataaaaattctacaggtcctcatacaaaggggacccaaa
gaaaaagatgaagagctggcaaaagaaaatggctgcaagagtcttacctg
gtgcttccggatgcagagtcgatgcagcgtttgccatggttgttcaaggg
gaaaatgggaaagtaataatacatcctgtgttaggttattagatactggc
atttatattccgcctgaatatttttcttt
gaattctgtaacagccatgttggcacactcttactctgcaggctctttgt
tttcacttcatgtcacgaatcactctcatctcttttaccaaaacccttct
ttctaatttgagtatcaaggaaaccattgaatactttctccctgacaggt
acgtggtcaccaaaaacaatctgttcagttcgtctctccaaaatactcta
tttaagccccaggttagtggatattttattctcacactcaaattctgagc
tttccattttgtcaaggaaaaggctgtcctgacactgttgctgcttctca
gggcatccggtgtaatgggtaaagcatggagacactggggtcggagagag
agctcagcagctcaaggcacccgctgccaagcctgaggaactgagttcaa
tcctgggggcttcatggtagatggcgagaactgaccactgtggctttctc
tccgcccttttatgtgcatgcacacacacacagagaaatgagtgattgaa
aagtattttctcaatatggtttacggaatgaattccaggacacccagggc
tacacagagaaacctcatcccaaaaaacaaacaaacaaaaagcaaaacaa
aaaaaaaaatcaaatagataagtaaataataaataataaataataaaaat
tttaaaacattataaaattgactaaatatttggtaaattcactgaatcca
cttaacgttggggtggttttgatttagggggaaatattactttagcccta
tggaaacaaagacactgtgccctacattctaatagttgggatgtggcaaa
tatgctcttcacccagtcattcataaagggaacttataacataggagaga
cttaatgttaagaatgggttttgaataaaaaaaagccgtgtgttctgatt
acattaaaaaaccatgagtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_63610027_63611031
seq2: B6Ng01-113K24.b_50_1078 (reverse)

seq1  AAAG-AAAATA-TCAGGCAGAATATAATTG-CAGT-TCTATTAACCTAAC  46
      |||| |||||| |||||| |||||||| || |||| |||| |||||||||
seq2  AAAGAAAAATATTCAGGCGGAATATAAATGCCAGTATCTAATAACCTAAC  50

seq1  ACAGGATGTATTTATTTACTTTCC--ATTTCCCCCTGAAC-ACCATGGC-  92
      ||||||||||||   |||||||||   ||||||| ||||| |||||||| 
seq2  ACAGGATGTATT--ATTACTTTCCCATTTTCCCCTTGAACAACCATGGCA  98

seq1  AACGCTGCATCGACTCCTGCATCCGGAAGCACCAGGT-AGACTCTTGCAG  141
      ||||||||||||||| ||||||||||||||||||||| ||||||||||||
seq2  AACGCTGCATCGACT-CTGCATCCGGAAGCACCAGGTAAGACTCTTGCAG  147

seq1  CCATTTCCTTT--GCAGCTCTTCATCTTTT--CTTGTGT-CCCTTTGTAT  186
      |||||| ||||   ||||||||||||||||   ||| || ||||||||||
seq2  CCATTTTCTTTTGCCAGCTCTTCATCTTTTTCTTTGGGTCCCCTTTGTAT  197

seq1  GAGGACCTGTAG-ATTTTTATC-TTTTATGTA-TTCATCATCACCTGTGT  233
      |||||||||||| ||||||||| ||||||||| |||||||||||||||||
seq2  GAGGACCTGTAGAATTTTTATCTTTTTATGTATTTCATCATCACCTGTGT  247

seq1  ATCTATGTGGTA-CCATCTATCCACCTAGCTACCCAGCAA--CCAATCCG  280
      |||||||||||| |||||||||||||||||||||||||||  | ||||||
seq2  ATCTATGTGGTACCCATCTATCCACCTAGCTACCCAGCAAACCAAATCCG  297

seq1  ATATAATAT--AAAATAAT--AAAATATAAATATATT-AACTATTAGGAT  325
      |||||||||  ||||||||  |||||||||||||||| ||||||||||||
seq2  ATATAATATAAAAAATAATAAAAAATATAAATATATTAAACTATTAGGAT  347

seq1  -CCTATGTGACAT-AATATCAAGTGAATCTGGGGTTTTCTCTACCCTCCA  373
       |||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCCTATGTGACATAAATATCAAGTGAATCTGGGGTTTTCTCTACCCTCCA  397

seq1  TGTTTTAAGTTCTTTGATATAAAAATCCTGAATACAGAAGCCTGTTAGGG  423
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAAGTTCTTTGATATAAAAATCCTGAATACAGAAGCCTGTTAGGG  447

seq1  AGAACCGTTAATGACCATTGTTATCATAAACTCTCAATATTTTCACTTTA  473
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCGTTAATGACCATTGTTATCATAAACTCTCAATATTTTCACTTTA  497

seq1  TTGAGGAGATTCAGTTCTTAGTGAGTACAGGTACTACATATTAACTTTCA  523
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGAGATTCAGTTCTTAGTGAGTACAGGTACTACATATTAACTTTCA  547

seq1  AATCCCAAACTGCAGACTATTTTAAAGCGTGTCACTCTTCTTACAGAATT  573
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAAACTGCAGACTATTTTAAAGCGTGTCACTCTTCTTACAGAATT  597

seq1  AAAAGACTGTTTGATAATGCCTTGGCTTGATTTCCAACAGTGAGAAATTG  623
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTGTTTGATAATGCCTTGGCTTGATTTCCAACAGTGAGAAATTG  647

seq1  GTGTGTGGTGGGAGTGTGGAGAGACGGAGAAGGAGAATCTGAACTACTCT  673
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGGTGGGAGTGTGGAGAGACGGAGAAGGAGAATCTGAACTACTCT  697

seq1  TTTGAAATGTAAATGCACATTTCCACGCTCAAAAATATTGACTTCAAAAA  723
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATGTAAATGCACATTTCCACGCTCAAAAATATTGACTTCAAAAA  747

seq1  GACAGGGCTGAATCGTAGCTCATGTTCAGAGCGTTGTGTTTATTTTGTCT  773
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGCTGAATCGTAGCTCATGTTCAGAGCGTTGTGTTTATTTTGTCT  797

seq1  ACTGATACTCTTGATGTGTTCCCACTGATGGGCATGGCTAGAACAGGCAT  823
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATACTCTTGATGTGTTCCCACTGATGGGCATGGCTAGAACAGGCAT  847

seq1  CTCACAGAACACAAAAGAGACAAGGCATCGTGGCTTTAGCTGGTCTGGAT  873
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGAACACAAAAGAGACAAGGCATCGTGGCTTTAGCTGGTCTGGAT  897

seq1  TTTCATCCTCTAAGGCCAAGTTACACCCATAGAGAATGGCACCCAGGACA  923
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCCTCTAAGGCCAAGTTACACCCATAGAGAATGGCACCCAGGACA  947

seq1  TAAACACTAACGCTGGTGTGGATTGTTCAGTTCACCTGCACAATGGTGTC  973
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACTAACGCTGGTGTGGATTGTTCAGTTCACCTGCACAATGGTGTC  997

seq1  ATCTCCGATTTACAAATGGCAGAGTGGAATTC  1005
      ||||||||||||||||||||||||||||||||
seq2  ATCTCCGATTTACAAATGGCAGAGTGGAATTC  1029

seq1: chr10_63467996_63468906
seq2: B6Ng01-113K24.g_67_986

seq1  GAATTCTGTAACAGCCATGTTGGCACACTCTTACTCTGCAGGCTCTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAACAGCCATGTTGGCACACTCTTACTCTGCAGGCTCTTTGT  50

seq1  TTTCACTTCATGTCACGAATCACTCTCATCTCTTTTACCAAAACCCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTTCATGTCACGAATCACTCTCATCTCTTTTACCAAAACCCTTCT  100

seq1  TTCTAATTTGAGTATCAAGGAAACCATTGAATACTTTCTCCCTGACAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATTTGAGTATCAAGGAAACCATTGAATACTTTCTCCCTGACAGGT  150

seq1  ACGTGGTCACCAAAAACAATCTGTTCAGTTCGTCTCTCCAAAATACTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGGTCACCAAAAACAATCTGTTCAGTTCGTCTCTCCAAAATACTCTA  200

seq1  TTTAAGCCCCAGGTTAGTGGATATTTTATTCTCACACTCAAATTCTGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCCCCAGGTTAGTGGATATTTTATTCTCACACTCAAATTCTGAGC  250

seq1  TTTCCATTTTGTCAAGGAAAAGGCTGTCCTGACACTGTTGCTGCTTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATTTTGTCAAGGAAAAGGCTGTCCTGACACTGTTGCTGCTTCTCA  300

seq1  GGGCATCCGGTGTAATGGGTAAAGCATGGAGACACTGGGGTCGGAGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATCCGGTGTAATGGGTAAAGCATGGAGACACTGGGGTCGGAGAGAG  350

seq1  AGCTCAGCAGCTCAAGGCACCCGCTGCCAAGCCTGAGGAACTGAGTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGCAGCTCAAGGCACCCGCTGCCAAGCCTGAGGAACTGAGTTCAA  400

seq1  TCCTGGGGGCTTCATGGTAGATGGCGAGAACTGACCACTGTGGCTTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGGGCTTCATGGTAGATGGCGAGAACTGACCACTGTGGCTTTCTC  450

seq1  TCCGCCCTTTTATGTGCATGCACACACACACAGAGAAATGAGTGATTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCCCTTTTATGTGCATGCACACACACACAGAGAAATGAGTGATTGAA  500

seq1  AAGTATTTTCTCAATATGGTTTACGGAATGAATTCCAGGACACCCAGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTTTCTCAATATGGTTTACGGAATGAATTCCAGGACACCCAGGGC  550

seq1  TACACAGAGAAACCTCATCCCAAAAAACAAACAAACAAAAAGCAAAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAGAAACCTCATCCCAAAAAACAAACAAACAAAAAGCAAAACAA  600

seq1  AAAAAAAAATCAAATAGATAAGTAAATAATAAATAATAAATAATAAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATCAAATAGATAAGTAAATAATAAATAATAAATAATAAAAAT  650

seq1  TTTAAAACATTATAAAATTGACTAAATATTTGGTAAATTCACTGAATCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACATTATAAAATTGACTAAATATTTGGTAAATTCACTGAATCCA  700

seq1  CTTAACGTT-GGGTGGTTTTGATTTAGGGGGAAATATTAC-TTAGCCCTA  748
      ||||||||| |||||||||||||||||||||||||||||| |||||||||
seq2  CTTAACGTTGGGGTGGTTTTGATTTAGGGGGAAATATTACTTTAGCCCTA  750

seq1  TGGAAACAAAGACACTGTG-CCTACATTCTAATAGTTGGGATGTGGC-AA  796
      ||||||||||||||||||| ||||||||||||||||||||||||||| ||
seq2  TGGAAACAAAGACACTGTGCCCTACATTCTAATAGTTGGGATGTGGCAAA  800

seq1  TATGCTCTTCACCCAGTCATTCAT-AAGGGAAC-TATAACATAGGAGAGA  844
      |||||||||||||||||||||||| |||||||| ||||||||||||||||
seq2  TATGCTCTTCACCCAGTCATTCATAAAGGGAACTTATAACATAGGAGAGA  850

seq1  CTTAGTGTTAGGAAT-GGTTTTGAAT-AAAAAAAGCCGTGTGTTCCGAAT  892
      |||| ||||| |||| |||||||||| |||||||||||||||||| || |
seq2  CTTAATGTTAAGAATGGGTTTTGAATAAAAAAAAGCCGTGTGTTCTGATT  900

seq1  ACATTAAAAAA-CATGAGTA  911
      ||||||||||| ||||||||
seq2  ACATTAAAAAACCATGAGTA  920