BAC Information

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BAC

Clone NameB6Ng01-114E09
Chromosome10 (Build37)9 (Build37)
Map Location 104,053,516 - 104,054,36392,471,637 - 92,472,779
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114E09.bB6Ng01-114E09.g
ACCDH919834DH919835
length8911,122
definitionDH919834|Mus musculus domesticus DNA, BAC clone: B6Ng01-114E09, 5' end.DH919835|Mus musculus domesticus DNA, BAC clone: B6Ng01-114E09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,516 - 104,054,363)(92,471,637 - 92,472,779)
sequence
gaattctcacctgaggaataccgaatggcctttaaagcacctgaaaacaa
tgttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgat
attccatctcacaccagtcagaatggctaagataaaaaattcaggtgaca
gcagatgctggcgtggatgtagagaaagaggaacactcctccattgttgg
tgggattgcaagcttgtacaaccactctggaaatcagtctggcggttcct
tagaaaattggatatagtactaccggaagatccagcaatacctctcctga
gcatatatccagaagatgtcccaactggtaagaaggacacatgctccact
atgttcatagcagccttatttataatagccagaagctggaaagaacccag
atgcccctcaacagaggaatggatacagaaaatgtggtacatttacacaa
tggagtactactcagctattaaaaagaatgaatttatgaaatttctagcc
aaatggatggacctggagggcatcatcctaagtgaggtaacacaatcaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaact
taggatacccaagatatactatacaattttgctaaaagcatgaaactcaa
gaagaatgaagaccaaagtgtggacactgtgccccttcttagaattggga
acaaaacacccatggaaggaattacagagacaaacatgcactttcaatgt
gagacattttcataagctctgactaggatcagggacatactatgtgtagt
tcacattttagacactacattaaactattttagaatcaaccccatttgct
tcacgttcagactttatagatgctccccataaccatatttt
gaattcatttattggttgattcactcatttgttcaaccaacaattactga
atgtcttcaaaatactaagctaaggactaacaaagaagttaaagacgtga
gcccagcttgtaaggtagaagatgcagcctggaataagaggggttttgat
tagatgcataaaatagaatggatatctgggtgggtacagagaattgaagg
ctagtgagaggtaagtggaaggaaatgctattttcctgctgtgccttgtc
tagtggagttgacactggaaataagccttgaaagcaaatcaatgggtggg
gcccaggttaagtagattcatattagcttctgaataggatagtgaatcaa
ggttattgttgtgagcctgatctatttagattttaatctacagggcaggt
atctataaatgggtcttgtgtgaccaagcattgttctgtaactgagaact
ctccatttacttatgaagacatatgtgactgcttttgtaccagcctggca
gaattacgttgtttgacagaaactgtgtggccttagagtccagactgtct
tctggtggccagtgtaaatatttggtgacttattttaagccatagctaga
aactactggtagactctgatgtgtggtaccttcaggagagtctcagactc
ctgagccaggaatgcctgtgtggcagggtggcagattgctgggaaggtgc
atatggagcctgtgggggtgtaaatcaatatggaccatcatcttctcgga
gagaaactgaggagtgggtgtaaggtggaatcagtaaaacactgcaaaag
agtttcaatggaagttgtcatggaaacaatgagtccaggatgaatgacga
atttttcatccaatctgggtcactgtggtagaagttaccacaaacataac
acagaaagacaaacactcataaaagtctcaatgacctgttagagaataac
tatgacatttttgggcccactcatgggttttgcagacttgtgatatttac
attctcaatgtgaaagtttattttatttctcgtaattttaatgactgatt
ctggagatatttttatgatctgttgcatcgtctttgaaaaataattttat
tgacattttgaaggctcaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053516_104054363
seq2: B6Ng01-114E09.b_35_670 (reverse)

seq1  TTTAGC-AAATTGTATCTTATATCTTGGGTATCCTAAGTTTCTGGGCTAA  49
      |||||| |||||||||  ||||||||||||||||||||||| ||||||||
seq2  TTTAGCAAAATTGTATAGTATATCTTGGGTATCCTAAGTTT-TGGGCTAA  49

seq1  TATCCACTTATCAGTGAGTACATATTGCGCGAGTTCCTTTGTGATTGGGT  99
      ||||||||||||||||||||||||||| | |||||||||  |||||| ||
seq2  TATCCACTTATCAGTGAGTACATATTGTGTGAGTTCCTT--TGATTGTGT  97

seq1  TACCGCACTCAGGATGATACTCTCCAGGTCCATCCATTTGCCTAGGAATT  149
      |||| |||| |||||||| | ||||||||||||||||||| |||| ||||
seq2  TACCTCACTTAGGATGATGCCCTCCAGGTCCATCCATTTGGCTAGAAATT  147

seq1  TCATAAATTCATTCTTTTTAATAGCTCCATTTACATTTAATTTAATTAAT  199
      |||||||||||||||||||||||||                         
seq2  TCATAAATTCATTCTTTTTAATAGC-------------------------  172

seq1  GTAATTACAATTAATTAATTTATTAATTAAATAATTTAATAATTTAATTG  249
                                                        
seq2  --------------------------------------------------  172

seq1  ATAAATTAATTTAATTAATTAATTTAATTAATTAAATTAAATAATAATTT  299
                                                        
seq2  --------------------------------------------------  172

seq1  AATAATAAATTAAATATTTTAAAATTAATAATAATTTTATAAGTAAATAA  349
                                             | ||||     
seq2  ---------------------------------------TGAGTA-----  178

seq1  TTTAATTAATGTAATTTAATTAATGTAATTACATTACATTTAATAGCTCC  399
                              |||                   ||||
seq2  ------------------------GTA-------------------CTCC  185

seq1  ATTGTGTAAATGTACCACATTTTCTGTATCTATTCCTCTGTTGAGGGGCA  449
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATTGTGTAAATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGGCA  235

seq1  TCTGGGTTCTTTCCAGCTCCTGGCTATTATAAATAAGGCTGCTATGAATA  499
      |||||||||||||||||| ||||||||||||||||||||||||||||| |
seq2  TCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACA  285

seq1  TAGTGGAGCATGTGTCCTTCTTACCGGTTGGGGCATCTTCTGGATATATG  549
      ||||||||||||||||||||||||| |||||| |||||||||||||||||
seq2  TAGTGGAGCATGTGTCCTTCTTACCAGTTGGGACATCTTCTGGATATATG  335

seq1  CCCAGAAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAATTTTCT  599
      | ||| ||||||||||||||||| |||||||||||||| |||||||||||
seq2  CTCAGGAGAGGTATTGCTGGATCTTCCGGTAGTACTATATCCAATTTTCT  385

seq1  GACGAACCGCCAGACGGATTTCCAGAGTGGTTGTACAAGCCTGCAATCCC  649
       | |||||||||||| |||||||||||||||||||||||| |||||||||
seq2  AAGGAACCGCCAGACTGATTTCCAGAGTGGTTGTACAAGCTTGCAATCCC  435

seq1  ACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTG  699
      |||||||||||||||||||||||||||||| |||||| ||||||||||||
seq2  ACCAACAATGGAGGAGTGTTCCTCTTTCTCTACATCCACGCCAGCATCTG  485

seq1  CTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAA  749
      ||||||||||||||||| |||||||||||||||||||||||||| |||||
seq2  CTGTCACCTGAATTTTTTATCTTAGCCATTCTGACTGGTGTGAGATGGAA  535

seq1  TCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAAC  799
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAAC  585

seq1  ATT-TTTTCAGGTGC-TTCTCTGCCATTCGGTATTCCTCAGGTGAGAATT  847
      ||| ||||||||||| ||    ||||||||||||||||||||||||||||
seq2  ATTGTTTTCAGGTGCTTTAAAGGCCATTCGGTATTCCTCAGGTGAGAATT  635

seq1  C  848
      |
seq2  C  636

seq1: chr9_92471637_92472779
seq2: B6Ng01-114E09.g_68_1189

seq1  GAATTCATTTATTGGTTGATTCACTCATTTGTTCAACCAACAATTACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTATTGGTTGATTCACTCATTTGTTCAACCAACAATTACTGA  50

seq1  ATGTCTTCAAAATACTAAGCTAAGGACTAACAAAGAAGTTAAAGACGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTCAAAATACTAAGCTAAGGACTAACAAAGAAGTTAAAGACGTGA  100

seq1  GCCCAGCTTGTAAGGTAGAAGATGCAGCCTGGAATAAGAGGGGTTTTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCTTGTAAGGTAGAAGATGCAGCCTGGAATAAGAGGGGTTTTGAT  150

seq1  TAGATGCATAAAATAGAATGGATATCTGGGTGGGTACAGAGAATTGAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGCATAAAATAGAATGGATATCTGGGTGGGTACAGAGAATTGAAGG  200

seq1  CTAGTGAGAGGTAAGTGGAAGGAAATGCTATTTTCCTGCTGTGCCTTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGAGAGGTAAGTGGAAGGAAATGCTATTTTCCTGCTGTGCCTTGTC  250

seq1  TAGTGGAGTTGACACTGGAAATAAGCCTTGAAAGCAAATCAATGGGTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGAGTTGACACTGGAAATAAGCCTTGAAAGCAAATCAATGGGTGGG  300

seq1  GCCCAGGTTAAGTAGATTCATATTAGCTTCTGAATAGGATAGTGAATCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGTTAAGTAGATTCATATTAGCTTCTGAATAGGATAGTGAATCAA  350

seq1  GGTTATTGTTGTGAGCCTGATCTATTTAGATTTTAATCTACAGGGCAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTGTTGTGAGCCTGATCTATTTAGATTTTAATCTACAGGGCAGGT  400

seq1  ATCTATAAATGGGTCTTGTGTGACCAAGCATTGTTCTGTAACTGAGAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATAAATGGGTCTTGTGTGACCAAGCATTGTTCTGTAACTGAGAACT  450

seq1  CTCCATTTACTTATGAAGACATATGTGACTGCTTTTGTACCAGCCTGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTTACTTATGAAGACATATGTGACTGCTTTTGTACCAGCCTGGCA  500

seq1  GAATTACGTTGTTTGACAGAAACTGTGTGGCCTTAGAGTCCAGACTGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTACGTTGTTTGACAGAAACTGTGTGGCCTTAGAGTCCAGACTGTCT  550

seq1  TCTGGTGGCCAGTGTAAATATTTGGTGACTTATTTTAAGCCATAGCTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGGCCAGTGTAAATATTTGGTGACTTATTTTAAGCCATAGCTAGA  600

seq1  AACTACTGGTAGACTCTGATGTGTGGTACCTTCAGGAGAGTCTCAGACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTGGTAGACTCTGATGTGTGGTACCTTCAGGAGAGTCTCAGACTC  650

seq1  CTGAGCCAGGAATGCCTGTGTGGCAGGGTGGCAGATTGCTGGGAAGGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCAGGAATGCCTGTGTGGCAGGGTGGCAGATTGCTGGGAAGGTGC  700

seq1  ATATGGAGCCTGTGGGGGTGTAAATCAATATGGACCATCATCTTCTCGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGAGCCTGTGGGGGTGTAAATCAATATGGACCATCATCTTCTCGGA  750

seq1  GAGAAACTGAGGAGTGGGTGTAAGGTGGAATCAGTAAAACACTGCAAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACTGAGGAGTGGGTGTAAGGTGGAATCAGTAAAACACTGCAAAAG  800

seq1  AGTTTCAATGGAAGTTGTCATGGAAACCAATGAGTCCAGGATGAATGACG  850
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGTTTCAATGGAAGTTGTCATGGAAA-CAATGAGTCCAGGATGAATGACG  849

seq1  AATTTTTCATCCAATCTGGGTCACTGTGGTAGAAGTTACCACAAACATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTCATCCAATCTGGGTCACTGTGGTAGAAGTTACCACAAACATAA  899

seq1  CACAGAAGGACAAACACTCATAAAAGTCTCAATGACCTGTTAGAGACATA  950
      ||||||| |||||||||||||||||||||||||||||||||||||| |||
seq2  CACAGAAAGACAAACACTCATAAAAGTCTCAATGACCTGTTAGAGA-ATA  948

seq1  ACTATGACATGTCTGGGCTCACTCATGGGTTTTGCAGGACTTGTGAATAT  1000
      |||||||||| | ||||| ||||||||||||||||| |||||||| ||||
seq2  ACTATGACATTTTTGGGCCCACTCATGGGTTTTGCA-GACTTGTG-ATAT  996

seq1  TTACCATTCTCAAATGTGGAAAAGTTTTATTTTATTTCTCGT-ATTTTAA  1049
      ||| ||||||| ||||||  |||| ||||||||||||||||| |||||||
seq2  TTA-CATTCTC-AATGTG--AAAG-TTTATTTTATTTCTCGTAATTTTAA  1041

seq1  TGGACTGAGTTCCTGCGAGAATTATTTTTATGATCTCTGTGCATTCGTCT  1099
      | ||||||  | ||| ||||  |||||||||||||| | |||| ||||||
seq2  T-GACTGA--TTCTG-GAGA--TATTTTTATGATCTGT-TGCA-TCGTCT  1083

seq1  TTTGAAAAAAAATATTTTTATTGGACAATTTTGAGGCTCAAATA  1143
      ||     ||||||| ||||||| |||| |||  |||||||||||
seq2  TT----GAAAAATAATTTTATT-GACATTTTGAAGGCTCAAATA  1122