BAC Information

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BAC

Clone NameB6Ng01-114L18
Chromosome10 (Build37)16 (Build37)
Map Location 104,053,595 - 104,054,36349,436,737 - 49,437,478
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114L18.bB6Ng01-114L18.g
ACCDH920181DH920182
length9501,133
definitionDH920181|Mus musculus domesticus DNA, BAC clone: B6Ng01-114L18, 5' end.DH920182|Mus musculus domesticus DNA, BAC clone: B6Ng01-114L18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,595 - 104,054,363)(49,436,737 - 49,437,478)
sequence
gaattctcacctgaggaatatcgaatgtctgagaaacacctgaaaaaatg
ttcagtatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggtgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtgtggcggtttttca
gaaaataggacatggtactaccggaggatcctgcaatacctctcctgggc
atatatccagaagatgttccaactagtaagaaagaaacatgctcccctat
tttcatagcaaccttatttataagagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacaaaaatgtggtacatttacataatgg
agtactactcagctattaaaaagaatgaatttttgaaattcctaggcaaa
tgtttggacctggagggcattatcctgagtgaggtaacccaatcacaaaa
gaactcaaatatgtattcactgataagtggatattagcccagaaatttag
aatacccaagatataatttacaatttgcaaaacacatgaaactcaagaag
aatgaagaccaaagtgtggatactttgccccttcttagaaatgggaacaa
aacacccatggaaggagttacagagacaaagtttggagctgagacaaaag
gatggaccatgtagagactgccatatccagggttccatcccataatcagc
ctccaaactctgacaccattgcatacactagcagattgtgccgataggac
cctgatatagctgtcttttgggagacttttgggatagcattggaaatgta
actgaggaaaatacctaatttaaaaaaaaggaaagcttgttctggtgaaa

gaattctcttttattgaaaatagattagtttccctaaaatatgtctctat
ggctcccctaggcctcccagttctttcccatatttcctcctatctggatc
catacattttctatttcacagtagaaaacaaacaggtatctagggaataa
taacaaaagaaaagaaaaccaaaattaggaataagagcaaaaccaaaaat
attcagaagaaaaatatgtaaagaaaaagtacaagaaatacatatactca
cagaaatgcacacatttgcacacacaggcatcccctcccataaaaacaca
aaactggaagccatggtgtatacagaaaggaaccgtaaagttaaaaacaa
aaacaacaaaaaccaaccaaacaaaaaagaactgactcaaaattgacata
aagaacctccatagacaccgttgactatttcatgctggccatctacttct
gggcacaagcatgcccttaggaatggtttgtctctccagtgagaatcctt
ggagaaaaccaatttttcatttacaggaggctatcaatagacagcttctg
ggttagagatgggaacatatgtcacttctcttttcaactctaggacagca
tctggtggagacccgtgcaagccatgtgtttgctgccacagtctctgtgt
gtatgtgtgtatcagttgtgctgtgtatagatggcctggtttcctaggtg
tcctaaataccctctgactcaaactctttccacctcctcttcctgagccc
tgagttagaaatttaatggagacatctcatttatgggtgagtgttgcagt
ctcacactctgcatgtattctgactatgagtctctctttgctcctattgg
ctggaggaggaagcctctgtgatgttggatattaaaggcactgatatgag
tataagcatagtaagataaaaatctaattattaaccttgtatcaattcca
cggtttggtttctgtgtatgagaatgtggcagtgtatagataccattatt
ccagaaatgccagcattttgggctatgaacagttatgagatgtaataata
tgaaatgtcctagtgttccttactatgctaaatagctctcttcagattcc
aagtttaatgtgatactaattatgactctagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053595_104054363
seq2: B6Ng01-114L18.b_46_601 (reverse)

seq1  GAGTTCCTTTGTGATTGGGTTACCGCACTCAGGATGATACTCTCCAGGTC  50
      |||||| ||||||||||||||||| |||||||||| || | |||||||||
seq2  GAGTTCTTTTGTGATTGGGTTACCTCACTCAGGATAATGCCCTCCAGGTC  50

seq1  CATCCATTTGCCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTCCAT  100
      ||  ||||||||||||||||||| |||||||||||||||||||||     
seq2  CAAACATTTGCCTAGGAATTTCAAAAATTCATTCTTTTTAATAGC-----  95

seq1  TTACATTTAATTTAATTAATGTAATTACAATTAATTAATTTATTAATTAA  150
                                                        
seq2  --------------------------------------------------  95

seq1  ATAATTTAATAATTTAATTGATAAATTAATTTAATTAATTAATTTAATTA  200
                                                        
seq2  --------------------------------------------------  95

seq1  ATTAAATTAAATAATAATTTAATAATAAATTAAATATTTTAAAATTAATA  250
                                                        
seq2  --------------------------------------------------  95

seq1  ATAATTTTATAAGTAAATAATTTAATTAATGTAATTTAATTAATGTAATT  300
               | ||||                             |||   
seq2  ---------TGAGTA-----------------------------GTA---  104

seq1  ACATTACATTTAATAGCTCCATTGTGTAAATGTACCACATTTTCTGTATC  350
                      ||||||| ||||||||||||||||||| ||||||
seq2  ----------------CTCCATTATGTAAATGTACCACATTTT-TGTATC  137

seq1  TATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATTAT  400
       ||||||||||||||||||||||||||||||||||||| |||||| ||||
seq2  CATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTCTTAT  187

seq1  AAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGTTG  450
      |||||||| ||||||||| |||| ||||||||| || |||||||  ||||
seq2  AAATAAGGTTGCTATGAAAATAGGGGAGCATGTTTCTTTCTTACTAGTTG  237

seq1  GGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCGGT  500
      |  |||||||||||||||||||||| ||||||||||| ||||||||||||
seq2  GAACATCTTCTGGATATATGCCCAGGAGAGGTATTGCAGGATCCTCCGGT  287

seq1  AGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGTGG  550
      ||||| |||||| |||||||||  |||||||| || ||||||||||||||
seq2  AGTACCATGTCCTATTTTCTGAAAAACCGCCACACTGATTTCCAGAGTGG  337

seq1  TTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTC  600
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTGTACAAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTC  387

seq1  CACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATT  650
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCTCACCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATT  437

seq1  CTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCT  700
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTGACTGGTGTGAGATGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCT  487

seq1  GATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCGGT  750
      |||||||||||||  |||||||||||||||||| ||||| | |||||| |
seq2  GATGATTAAGGATACTGAACATTTTTTCAGGTGTTTCTCAGACATTCGAT  537

seq1  ATTCCTCAGGTGAGAATTC  769
      |||||||||||||||||||
seq2  ATTCCTCAGGTGAGAATTC  556

seq1: chr16_49436737_49437478
seq2: B6Ng01-114L18.g_475_1201

seq1  CTCCATAGACACCGTTGACTATTTCATGCTGGCCATCTACTTCTGGGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATAGACACCGTTGACTATTTCATGCTGGCCATCTACTTCTGGGCAC  50

seq1  AAGCATGCCCTTAGGAATGGTTTGTCTCTCCAGTGAGAATCCTTGGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGCCCTTAGGAATGGTTTGTCTCTCCAGTGAGAATCCTTGGAGAA  100

seq1  AACCAATTTTTCATTTACAGGAGGCTATCAATAGACAGCTTCTGGGTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATTTTTCATTTACAGGAGGCTATCAATAGACAGCTTCTGGGTTAG  150

seq1  AGATGGGAACATATGTCACTTCTCTTTTCAACTCTAGGACAGCATCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGAACATATGTCACTTCTCTTTTCAACTCTAGGACAGCATCTGGT  200

seq1  GGAGACCCGTGCAAGCCATGTGTTTGCTGCCACAGTCTCTGTGTGTATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCCGTGCAAGCCATGTGTTTGCTGCCACAGTCTCTGTGTGTATGT  250

seq1  GTGTATCAGTTGTGCTGTGTATAGATGGCCTGGTTTCCTAGGTGTCCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATCAGTTGTGCTGTGTATAGATGGCCTGGTTTCCTAGGTGTCCTAA  300

seq1  ATACCCTCTGACTCAAACTCTTTCCACCTCCTCTTCCTGAGCCCTGAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTCTGACTCAAACTCTTTCCACCTCCTCTTCCTGAGCCCTGAGTT  350

seq1  AGAAATTTAATGGAGACATCTCATTTATGGGTGAGTGTTGCAGTCTCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTTAATGGAGACATCTCATTTATGGGTGAGTGTTGCAGTCTCACA  400

seq1  CTCTGCATGTATTCTGACTATGAGTCTCTCTTTGCTCCTATTGGCTGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCATGTATTCTGACTATGAGTCTCTCTTTGCTCCTATTGGCTGGAG  450

seq1  GAGGAAGCCTCTGTGATGTTGGATATT-AAGGCACTGATATGAGTATAAG  499
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAGGAAGCCTCTGTGATGTTGGATATTAAAGGCACTGATATGAGTATAAG  500

seq1  CATAGTAAGATAAAAATCTAATTATTAACCTTGTTATCAATTCCACGGTT  549
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CATAGTAAGATAAAAATCTAATTATTAACCTTG-TATCAATTCCACGGTT  549

seq1  TGGTTTTCTGTGTTATGAGAAGGTGGCAAGTGTATAGATACCA-TATTCC  598
      ||| |||||||| |||||||| ||||| ||||||||||||||| ||||||
seq2  TGG-TTTCTGTG-TATGAGAATGTGGC-AGTGTATAGATACCATTATTCC  596

seq1  AGAAATGGCCAGCATTTTGGGCTATGAACAGTTATGAGATGTTAATAATA  648
      |||||| |||||||||||||||||||||||||||||||||| ||||||||
seq2  AGAAAT-GCCAGCATTTTGGGCTATGAACAGTTATGAGATG-TAATAATA  644

seq1  TGAAATGGTTCCTAGTG-TCCTTACTAATGCTAAAATAGCTTCCTCTTCC  697
      |||||||  |||||||| |||||||| ||||| ||||||||  ||||| |
seq2  TGAAATG--TCCTAGTGTTCCTTACT-ATGCT-AAATAGCT--CTCTT-C  687

seq1  AGATTCCCAAGTTTTTAATGTTGATAACTAATTATGACTCTAGCT  742
      ||||| |||||  ||||||| |||| |||||||||||||||||||
seq2  AGATT-CCAAG--TTTAATG-TGAT-ACTAATTATGACTCTAGCT  727