BAC Information

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BAC

Clone NameB6Ng01-115B05
Chromosome10 (Build37)9 (Build37)
Map Location 45,142,275 - 45,143,34233,026,641 - 33,027,162
singlet/doubletsingletsinglet
Overlap geneLin28b
Upstream geneLOC100041506, Prdm1, LOC546476, 4930431F10Rik, LOC629573, LOC100041529, EG215974, Prep, Popdc3, Bves
Downstream geneDbil5-ps, LOC100042364, Hace1, LOC664781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115B05.bB6Ng01-115B05.g
ACCDH920434DH920435
length1,067982
definitionDH920434|Mus musculus domesticus DNA, BAC clone: B6Ng01-115B05, 5' end.DH920435|Mus musculus domesticus DNA, BAC clone: B6Ng01-115B05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,142,275 - 45,143,342)(33,026,641 - 33,027,162)
sequence
gaattcacagcctcaagttaggaaacagtgtgagggtttgtgggggttgg
gcctattagaaggtgcataggtcaactggactctgctttccaaagagctt
tcagacttcagtctctctaacttcctgttttgtaatgtaatctcttgttc
tcatgtgcattcctgtcatgatgctatctagctactggaccttttccaca
gtagaaacagtgccccaacacctgagcttgtactttcaacctccggaact
gtgaactccataagcctatgttatttgtaaaatctgtctccattacagta
atagtaaactgacatctagatacagcagtcctttttactcctcacagttt
ccattacttaatagtagttagaaaatactgaatggaaatgttcagaaata
atttataagcttaagaagtaaatcaatttgagtaccatgatgagatttct
ggcatcccatgccatctgacaaaggatgaattatcccttcggtatcttgt
gtatccacttcctacctgagccatcagggttagcagatcagcctgaggta
ctgcactgcttctgttcaaaccaccctaatttaacttaagaatgacccca
aaagaaaacagtcatgatggtgacaacacagttatgctggaatgagctat
aatgtgagtcctttaagttaaaaggtgaaaggtaatgaatgacttactaa
gggaagaaatcagtgaaaaaattctctccaggaaactccggaaaggaaaa
agaaatgtacctgtcatctcccactgtagacgttagggtcataaagcata
gtgcttagtaaggatgagaaggacactggatttgaaaactcgcttatgta
aagaaacacagtacatagagggtttggtacagtttttcgcctgagtccta
ttccagcatccaatgagaatcttagaatgtacataccatatgaaatagaa
gactactgtaattaaaaataactcaaatattacatgggatgcataatgac
attacttcaaatttaatgcaaaggagacttattcattgtgaaaataatgt
ggtaaaaagaaaagggg
gaattcagaacttttcagctggggaacgagagtaccagtgagtacagctt
tacgaggtaagcctggccttgaactttctaacgaaattcaagacagtcta
tcagaagtaaagtggaaaatgtttggccttgaattttttctggtgttagg
agcccttttgttccttttcacatgttatcaagtggttaagatagggagga
ttctagatgaaattcaggacaagctatcagaagtaaagcggggagagaga
gtaggaacaaagagaaaatatggtacacaaaataagtatacaggcctttc
caagggtcttgaacccgaggaaaagtttaggtcaggtaagaatacctgga
gagagattagaagaaaaagaggaaaaagggaaaagaagaaagatcaatta
gcggaggtctctaggaaaaggagcctgtgctcatcgctggatgggctcgg
ggagccagctcttagtagctctgaagcaggtgaagaatcctcctctgagg
aaacagactgggaggaagaagcagctcattatgagaaaaaagggtaccag
ccagctaattggtcaagaaaaaagccaaaagcggctggcgaaggccagtt
tgctgattggcctcagggcagtcggcttcaaggtccgccctatgcggagt
ccccgccctgcgtagtgcgtcagcaatgcgcagagaggcagtgcgcagag
aggcagtgcgcagactcattcattcccagagaggaacaaaggaaaataca
acaggcatttccggtctttgaaggagccgagggtgggcgtgtccacgctc
cggtagaatacttacaaattaaagaaattgccgaatcggttcgtaaatat
ggaattaatgctaattttaccttggtgcagttagacaggcttgccggcat
ggcactaactcctgccgactggcaaatgattgcaaaagccgctctcccta
tatgggcaatatttggaatgagatctctgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_45142275_45143342
seq2: B6Ng01-115B05.b_43_1109

seq1  GAATTCACAGCCTCAAGTTAGGAAACAGTGTGAGGGTTTGTGGGGGTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGCCTCAAGTTAGGAAACAGTGTGAGGGTTTGTGGGGGTTGG  50

seq1  GCCTATTAGAAGGTGCATAGGTCAACTGGACTCTGCTTTCCAAAGAGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATTAGAAGGTGCATAGGTCAACTGGACTCTGCTTTCCAAAGAGCTT  100

seq1  TCAGACTTCAGTCTCTCTAACTTCCTGTTTTGTAATGTAATCTCTTGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTTCAGTCTCTCTAACTTCCTGTTTTGTAATGTAATCTCTTGTTC  150

seq1  TCATGTGCATTCCTGTCATGATGCTATCTAGCTACTGGACCTTTTCCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGCATTCCTGTCATGATGCTATCTAGCTACTGGACCTTTTCCACA  200

seq1  GTAGAAACAGTGCCCCAACACCTGAGCTTGTACTTTCAACCTCCGGAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAACAGTGCCCCAACACCTGAGCTTGTACTTTCAACCTCCGGAACT  250

seq1  GTGAACTCCATAAGCCTATGTTATTTGTAAAATCTGTCTCCATTACAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACTCCATAAGCCTATGTTATTTGTAAAATCTGTCTCCATTACAGTA  300

seq1  ATAGTAAACTGACATCTAGATACAGCAGTCCTTTTTACTCCTCACAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAAACTGACATCTAGATACAGCAGTCCTTTTTACTCCTCACAGTTT  350

seq1  CCATTACTTAATAGTAGTTAGAAAATACTGAATGGAAATGTTCAGAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTACTTAATAGTAGTTAGAAAATACTGAATGGAAATGTTCAGAAATA  400

seq1  ATTTATAAGCTTAAGAAGTAAATCAATTTGAGTACCATGATGAGATTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAAGCTTAAGAAGTAAATCAATTTGAGTACCATGATGAGATTTCT  450

seq1  GGCATCCCATGCCATCTGACAAAGGATGAATTATCCCTTCGGTATCTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCCCATGCCATCTGACAAAGGATGAATTATCCCTTCGGTATCTTGT  500

seq1  GTATCCACTTCCTACCTGAGCCATCAGGGTTAGCAGATCAGCCTGAGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCACTTCCTACCTGAGCCATCAGGGTTAGCAGATCAGCCTGAGGTA  550

seq1  CTGCACTGCTTCTGTTCAAACCACCCTAATTTAACTTAAGAATGACCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTGCTTCTGTTCAAACCACCCTAATTTAACTTAAGAATGACCCCA  600

seq1  AAAGAAAACAGTCATGATGGTGACAACACAGTTATGCTGGAATGAGCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAACAGTCATGATGGTGACAACACAGTTATGCTGGAATGAGCTAT  650

seq1  AATGTGAGTCCTTTAAGTTAAAAGGTGAAAGGTAATGAATGACTTACTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAGTCCTTTAAGTTAAAAGGTGAAAGGTAATGAATGACTTACTAA  700

seq1  GGGAAGAAATCAGTGAAAAAATTCTCTCCAGGAAACTCCGGAAAGGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAAATCAGTGAAAAAATTCTCTCCAGGAAACTCCGGAAAGGAAAA  750

seq1  AGAAATGTACCTGTCATCTCCCACTGTAGACGTTAGGGTCATAAAGCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTACCTGTCATCTCCCACTGTAGACGTTAGGGTCATAAAGCATA  800

seq1  GTGCTTAGTAAGGATGAGAAGGACACTGGATTTGAAAACTCGCTTATGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTAGTAAGGATGAGAAGGACACTGGATTTGAAAACTCGCTTATGTA  850

seq1  AAGAAACACAGTACATAGAGGGTTTGGTACAGTTTTTCGCCTGAGTCCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACACAGTACATAGAGGGTTTGGTACAGTTTTTCGCCTGAGTCCTA  900

seq1  TTCCAGCATCCAATGAGAATCTTAGAATGTACATACCATATGAAATAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCATCCAATGAGAATCTTAGAATGTACATACCATATGAAATAGAA  950

seq1  GACTACTGTAATTAAAAATAACTCAAATAATTACATGGGATGCATAATGA  1000
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GACTACTGTAATTAAAAATAACTCAAAT-ATTACATGGGATGCATAATGA  999

seq1  CATTACTTCAAAATTTAATGCAAAAGGAGAC-TATTCATTGTGAAAATAA  1049
      ||||||||| ||||||||||| ||||||||| ||||||||||||||||||
seq2  CATTACTTC-AAATTTAATGC-AAAGGAGACTTATTCATTGTGAAAATAA  1047

seq1  TGTGGT-AAAAGAAAAGGGG  1068
      |||||| |||||||||||||
seq2  TGTGGTAAAAAGAAAAGGGG  1067

seq1: chr9_33026641_33027162
seq2: B6Ng01-115B05.g_67_501 (reverse)

seq1  GATGAGTATAGGCTCCTTCTCCTAGAAACCTCCGCTGATTGATCTTTTTT  50
      |||||| | ||||||||| ||||||| ||||||||| |||||||||| ||
seq2  GATGAGCACAGGCTCCTTTTCCTAGAGACCTCCGCTAATTGATCTTTCTT  50

seq1  CTTTTCC------------TTCCTTCTAATCTCTCCCCAGGTATTCTTAC  88
      |||||||            || ||||||||||||| ||||||||||||||
seq2  CTTTTCCCTTTTTCCTCTTTTTCTTCTAATCTCTCTCCAGGTATTCTTAC  100

seq1  CTGACCTAAACTTTTCCTCGGGTTCAAGACCCTTGGAAAGGCCTGTATAC  138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTAAACTTTTCCTCGGGTTCAAGACCCTTGGAAAGGCCTGTATAC  150

seq1  TTATTTTGTGTACCATATTTCCTCTTTGCTCCTACTCTCTCTCCCCGCTT  188
      |||||||||||||||||||| ||||||| |||||||||||||||||||||
seq2  TTATTTTGTGTACCATATTTTCTCTTTGTTCCTACTCTCTCTCCCCGCTT  200

seq1  TACTTCTGATAGATTGCCCTGAATTTCATCCAGAATTTTCAGCCCTGCCT  238
      |||||||||||| ||| ||||||||||||| ||||   ||  ||||  ||
seq2  TACTTCTGATAGCTTGTCCTGAATTTCATCTAGAA---TCCTCCCTATCT  247

seq1  TAACCACTTGATAACATGTGAAAAGGAACAAAAAGGCTCCTAACACTAGA  288
      ||||||||||||||||||||||||||||||||| |||||||||||| |||
seq2  TAACCACTTGATAACATGTGAAAAGGAACAAAAGGGCTCCTAACACCAGA  297

seq1  GAAAGTTCAAGGCCAAACATACCTTGTAAAGCTATTTCCCACTTTACTTC  338
       ||| |||||||||||||               |||| ||||||||||||
seq2  AAAAATTCAAGGCCAAAC---------------ATTTTCCACTTTACTTC  332

seq1  TGATAGACTGTCTTGAATTTCGTTAGAAAGTTCAAGACCAGACTTACCTT  388
      |||||||||||||||||||||||||||||||||||| |||| ||||||| 
seq2  TGATAGACTGTCTTGAATTTCGTTAGAAAGTTCAAGGCCAGGCTTACCTC  382

seq1  GTAAAGCTATACTTACTGGTACCCCTATTCCCCAGCTGAAGAGTTCTGAA  438
      |||||||| |||| |||||||| |   ||||||||||||| |||||||||
seq2  GTAAAGCTGTACTCACTGGTACTCTCGTTCCCCAGCTGAAAAGTTCTGAA  432

seq1  TTCACGCAGTTGAATCCTTCTCAACAGTCTGTTTTACGGGAACACTTCAT  488
      |||                                               
seq2  TTC-----------------------------------------------  435

seq1  TACCACCGTTCCCCAGCTGAAGAGTTCTGAATTC  522
                                        
seq2  ----------------------------------  435