BAC Information

Click to search

BAC

Clone NameB6Ng01-115B24
Chromosome10 (Build37)
Map Location 5,641,512 - 5,642,241
singlet/doubletsinglet
Overlap geneEsr1
Upstream geneVip, Myct1, Syne1
Downstream geneLOC100041310, Gm221, 1700052N19Rik, Rmnd1, Zbtb2, Akap12, Mthfd1l, Plekhg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115B24.bB6Ng01-115B24.g
ACCDH920470DH920471
length1,165734
definitionDH920470|Mus musculus domesticus DNA, BAC clone: B6Ng01-115B24, 5' end.DH920471|Mus musculus domesticus DNA, BAC clone: B6Ng01-115B24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcgggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccaggaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgcgtgaggtaatacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggataaccaagatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagataa
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagatgttattgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atggaggagctagagaaagtagccaaggagctaaagggatctgcacccta
tagtggacacattatgactacagtacccggagctcttgactctagctaca
tatatatcaaagatgcttagtcgcatcacttgaagagaggctcatgactg
ccaaccttaatgccagtaccggtaactcaagccaaaagggagtgggtggc
caggggtagtgggct
gaattcatatcctctccttgggagtatctctcaattcatatcctctcctt
gggagtatctctcaattcatatcctctccttgggagtatctctctataag
aacgttaggaggcagttaaggttgagggagggatgccatatgtcttatta
agtcttatcaagagggagtgccttcatcttccctctcctcaagctctcac
ccatgaggagtcaaaggcactgacatgctagctccctgcagggtaggaag
acgatcctgctctcagatggcagttttcctaactaagagaaaggaaatgc
atgctgttctgagctccctgcctgtgacatttggtgatggcagcctgagc
tgactaagacggtacctgacccttcagagttgttcttggtaaatatagta
atcaatattgtttcagtgaagtgaatgaatgagtcactcattggcatgat
tgcagaggcactactccttcagagctgcgtgattgccactcagggggcag
aagagaggaggggcatctgctagctagcctaagggtcctggatccttagg
gagagtgggaggcagccttgactgtgactaaatgcaaggaaaggcttaag
caaaggctcaaaactccaatgctctgctatctgttggctttttcttcttt
agcatttggtgggggttggcttttgaaattggagacaattcttcatagac
tgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_5641512_5642241
seq2: B6Ng01-115B24.g_66_799 (reverse)

seq1  CACACACACACACACACACACACACACATACACAGTCTATGAAGAATTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACATACACAGTCTATGAAGAATTGT  50

seq1  CTCCAATTTC-AAAGCCAA-CCCCACCAAATGCT-AAGAAG-AAAAGCCA  96
      |||||||||| |||||||| |||||||||||||| |||||| ||||||||
seq2  CTCCAATTTCAAAAGCCAACCCCCACCAAATGCTAAAGAAGAAAAAGCCA  100

seq1  ACAGATAGCAGAGCATTGGAGTTTTGAGCCTTTGCTTAAGCCTTTCCTTG  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAGCAGAGCATTGGAGTTTTGAGCCTTTGCTTAAGCCTTTCCTTG  150

seq1  CATTTAGTCACAGTCAAGGCTGCCTCCCACTCTCCCTAAGGATCCAGGAC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGTCACAGTCAAGGCTGCCTCCCACTCTCCCTAAGGATCCAGGAC  200

seq1  CCTTAGGCTAGCTAGCAGATGCCCCTCCTCTCTTCTGCCCCCTGAGTGGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGGCTAGCTAGCAGATGCCCCTCCTCTCTTCTGCCCCCTGAGTGGC  250

seq1  AATCACGCAGCTCTGAAGGAGTAGTGCCTCTGCAATCATGCCAATGAGTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACGCAGCTCTGAAGGAGTAGTGCCTCTGCAATCATGCCAATGAGTG  300

seq1  ACTCATTCATTCACTTCACTGAAACAATATTGATTACTATATTTACCAAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTCATTCACTTCACTGAAACAATATTGATTACTATATTTACCAAG  350

seq1  AACAACTCTGAAGGGTCAGGTACCGTCTTAGTCAGCTCAGGCTGCCATCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTCTGAAGGGTCAGGTACCGTCTTAGTCAGCTCAGGCTGCCATCA  400

seq1  CCAAATGTCACAGGCAGGGAGCTCAGAACAGCATGCATTTCCTTTCTCTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGTCACAGGCAGGGAGCTCAGAACAGCATGCATTTCCTTTCTCTT  450

seq1  AGTTAGGAAAACTGCCATCTGAGAGCAGGATCGTCTTCCTACCCTGCAGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGGAAAACTGCCATCTGAGAGCAGGATCGTCTTCCTACCCTGCAGG  500

seq1  GAGCTAGCATGTCAGTGCCTTTGACTCCTCATGGGTGAGAGCTTGAGGAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAGCATGTCAGTGCCTTTGACTCCTCATGGGTGAGAGCTTGAGGAG  550

seq1  AGGGAAGATGAAGGCACTCCCTCTTGATAAGACTTAATAAGACATATGGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGATGAAGGCACTCCCTCTTGATAAGACTTAATAAGACATATGGC  600

seq1  ATCCCTCCCTCAACCTTAACTGCCTCCTAACGTTCTTATAGAGAGATACT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCCCTCAACCTTAACTGCCTCCTAACGTTCTTATAGAGAGATACT  650

seq1  CCCAAGGAGAGGATATGAATTGAGAGATACTCCCAAGGAGAGGATATGAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGAGAGGATATGAATTGAGAGATACTCCCAAGGAGAGGATATGAA  700

seq1  TTGAGAGATACTCCCAAGGAGAGGATATGAATTC  730
      ||||||||||||||||||||||||||||||||||
seq2  TTGAGAGATACTCCCAAGGAGAGGATATGAATTC  734