BAC Information

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BAC

Clone NameB6Ng01-115D01
Chromosome11 (Build37)10 (Build37)
Map Location 13,523,364 - 13,524,55645,616,497 - 45,616,704
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC627244
Downstream geneLOC432535, 1700046C09Rik, 1700054H16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115D01.bB6Ng01-115D01.g
ACCDH920518DH920519
length1,181906
definitionDH920518|Mus musculus domesticus DNA, BAC clone: B6Ng01-115D01, 5' end.DH920519|Mus musculus domesticus DNA, BAC clone: B6Ng01-115D01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(13,523,364 - 13,524,556)(45,616,497 - 45,616,704)
sequence
gaattctttactatgctggacttgaactttgagtcaagttaatcctaaca
ttccttgacttggctttatcagggtatgcagaaagaggcgaagaaaaaaa
gacaatatttgagctctcaagtttttgtttaacctaaattttttgatgac
ttttgttctttggaaggttatttatactttattcttgatccatgtgatcc
tctatatgtacatggacatggatttcccccagtattcttctatcctatct
ttgttgccacagtgacagatactgaaagcatgagaatacatttccttccc
atttcagaaaaaactcagcagcagacagaaactattctgtttgtcaaaag
tacatgctagagaatgaataaaaatgatatgagctacattttcataatca
tagttaatccaattattactttaatgaaatacaaagccgtttaatgtaca
catctgttgcagtttgaattgttagataccagttttctttgaagatgaaa
cagatcatgttgaagctctgcttgataatgaccctatgcaggatgcaatg
gtagtaaaggacccctttgaagtgttgagtagcttcaaagaagcagtgaa
agatcctgtcacagcctggcccaggaagctgagtggcatggggtacactg
gatctgttggagtgctgtagcaatggagaaactgtgtaggataaatattc
atcactctataagacaaatctgaataaccaaggctatataaaggaaactt
gaccttggtacattggcttacaagccaccaagaacccttagattctatca
aggaacttcaaagaatgaaaaatgatacaggaaaaagaaacattactgag
gaaaccatgcaggagagagttcactagatatagctacgatcacagaaaag
taaagattgaggttaatttgtcagagacctcaggatgaataagaatttta
ggatgtttggtgagacatggcttatatgaggtaagaaaagctttggctat
attagtgaagctggatgttgctaatataaaggcagatttacatgttgact
cagtctgtcgggatgagggatagattcatagcagagttacaaagcagaaa
tacctcactaggccgagaaagcagaacacacaggtcaacctcattcatgg
atggacatgttcgaagccttgtgtcagcagc
gaattcataagcatttcatttgtgtatcaagttcaataaatggtaattgt
gctgctttagtgtcaccttgacacacacctacacatatctgtgaagatgg
gatcatttaataagaaaattcctctataagattgacctgtagacaagtcc
atgggcagtatttacttaattaaagataatcttgagatggaccccccatt
gtgggtactgcccagtccattgggccggcaatcttgaatggtataggaac
cacgctgagcaatttataaggagaaaacttaaaatttaaaaggatataga
gtcatttacctttgaaggtcctataataaacaagagtacaattttacctc
aaaaaagaatgtgaactccaaataataatgatgctaatactgaaaaaagt
ctattctaaaagataccaattaactatcttaaaatagttgtgaccaaatt
agtcaacatgttgaatatatatatatatatatatatatatatatatatat
atatatatatatatgcatatatataatatataatagaagtatatataata
gaagtattatacatacatatatattatatataatagaagtagcttagata
acattttttcttttttcttttattagatattttctttatttacatttcaa
atgttatcccctttcctagttttccctctgacaatcccctctaccctccc
ccttccctctgctccccaacccacctatttccattcctggtcctggcatt
tcctcgatactgaggcatagaaccttcacaggaccaagggcctcttctcc
cattgatgacctattagaccatcctcttctacatatatagccagagccac
tagttccaccatgtgttttcttttgatttggtggtatacttcccaagagc
tctggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_13523364_13524556
seq2: B6Ng01-115D01.b_49_1229

seq1  GAATTCTTTACTATGCTGGACTTGAACTTTGAGTCAAGTTAATCCTAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACTATGCTGGACTTGAACTTTGAGTCAAGTTAATCCTAACA  50

seq1  TTCCTTGACTTGGCTTTATCAGGGTATGCAGAAAGAGGCGAAGAAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGACTTGGCTTTATCAGGGTATGCAGAAAGAGGCGAAGAAAAAAA  100

seq1  GACAATATTTGAGCTCTCAAGTTTTTGTTTAACCTAAATTTTTTGATGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATATTTGAGCTCTCAAGTTTTTGTTTAACCTAAATTTTTTGATGAC  150

seq1  TTTTGTTCTTTGGAAGGTTATTTATACTTTATTCTTGATCCATGTGATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTCTTTGGAAGGTTATTTATACTTTATTCTTGATCCATGTGATCC  200

seq1  TCTATATGTACATGGACATGGATTTCCCCCAGTATTCTTCTATCCTATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATGTACATGGACATGGATTTCCCCCAGTATTCTTCTATCCTATCT  250

seq1  TTGTTGCCACAGTGACAGATACTGAAAGCATGAGAATACATTTCCTTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCCACAGTGACAGATACTGAAAGCATGAGAATACATTTCCTTCCC  300

seq1  ATTTCAGAAAAAACTCAGCAGCAGACAGAAACTATTCTGTTTGTCAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGAAAAAACTCAGCAGCAGACAGAAACTATTCTGTTTGTCAAAAG  350

seq1  TACATGCTAGAGAATGAATAAAAATGATATGAGCTACATTTTCATAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCTAGAGAATGAATAAAAATGATATGAGCTACATTTTCATAATCA  400

seq1  TAGTTAATCCAATTATTACTTTAATGAAATACAAAGCCGTTTAATGTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAATCCAATTATTACTTTAATGAAATACAAAGCCGTTTAATGTACA  450

seq1  CATCTGTTGCAGTTTGAATTGTTAGATACCAGTTTTCTTTGAAGATGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTTGCAGTTTGAATTGTTAGATACCAGTTTTCTTTGAAGATGAAA  500

seq1  CAGATCATGTTGAAGCTCTGCTTGATAATGACCCTATGCAGGATGCAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCATGTTGAAGCTCTGCTTGATAATGACCCTATGCAGGATGCAATG  550

seq1  GTAGTAAAGGACCCCTTTGAAGTGTTGAGTAGCTTCAAAGAAGCAGTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTAAAGGACCCCTTTGAAGTGTTGAGTAGCTTCAAAGAAGCAGTGAA  600

seq1  AGATCCTGTCACAGCCTGGCCCAGGAAGCTGAGTGGCATGGGGTACACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTGTCACAGCCTGGCCCAGGAAGCTGAGTGGCATGGGGTACACTG  650

seq1  GATCTGTTGGAGTGCTGTAGCAATGGAGAAACTGTGTAGGATAAATATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTTGGAGTGCTGTAGCAATGGAGAAACTGTGTAGGATAAATATTC  700

seq1  ATCACTCTATAAGACAAATCTGAATAACCAAGGCTATATAAAGGAAACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTCTATAAGACAAATCTGAATAACCAAGGCTATATAAAGGAAACTT  750

seq1  GACCTTGGTACATTGGCTTACAAGCCACCAAGAACCCTTAGATTCTATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGGTACATTGGCTTACAAGCCACCAAGAACCCTTAGATTCTATCA  800

seq1  AGGAACTTCAAAGAATGAAAAATGATACAGGAAAAAGAAACATTACTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTTCAAAGAATGAAAAATGATACAGGAAAAAGAAACATTACTGAG  850

seq1  GAAACCATGCAGGAGAGAGTTCACTAGATATAGCTACGATCACAGAAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCATGCAGGAGAGAGTTCACTAGATATAGCTACGATCACAGAAAAG  900

seq1  TAAAGATTGAGGTTAATTTGTCAGAGACCTCAGGATGAATAAGAATTTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATTGAGGTTAATTTGTCAGAGACCTCAGGATGAATAAGAATTTTA  950

seq1  GGATGTTTGGTGAGACATGGCTTATATGAGGTAAGAAAAGCTTTGGCTAA  1000
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGATGTTTGGTGAGACATGGCTTATATGAGGTAAGAAAAGCTTTGGCT-A  999

seq1  TATTAGTGAAGCTGGATGTTGCTAATATAAAGGCAAGATTTACAATGTTG  1050
      |||||||||||||||||||||||||||||||||| |||||||| ||||||
seq2  TATTAGTGAAGCTGGATGTTGCTAATATAAAGGC-AGATTTAC-ATGTTG  1047

seq1  ACTCAGTCTGTCGGAATGAGGGATAAGATTTCCATAGCAGGAGTTACAAA  1100
      |||||||||||||| ||||||||| |||||  ||||||| ||||||||||
seq2  ACTCAGTCTGTCGGGATGAGGGAT-AGATT--CATAGCA-GAGTTACAAA  1093

seq1  GCAG-AATACCTCACTTAGGGCCGAGAAAGGCCAAGACACACAAGTCAAC  1149
      |||| |||||||||||   |||||||||||  ||  ||||||| ||||||
seq2  GCAGAAATACCTCACT--AGGCCGAGAAAG--CAGAACACACAGGTCAAC  1139

seq1  CTCA-TCATGGATGGGAACATGTCCAGAAGCTCTGTGTCAGCAGC  1193
      |||| ||||||||||  |||||| | |||||  ||||||||||||
seq2  CTCATTCATGGATGG--ACATGTTC-GAAGCCTTGTGTCAGCAGC  1181

seq1: chr10_45616497_45616704
seq2: B6Ng01-115D01.g_639_879 (reverse)

seq1  GGTCATCAATGGGAGGAGAGGCCCTTGGTCTTGTGAAGGTTCTATGCCCC  50
      ||||||||||||||| |||||||||||||| ||||||||||||||||| |
seq2  GGTCATCAATGGGAGAAGAGGCCCTTGGTCCTGTGAAGGTTCTATGCCTC  50

seq1  AGTGTAG-GGGAATGCCAGGACCAGGAATGGGAGTGGGTGGGTTGGGGAG  99
      ||| | | || |||||||||||||||||||| | | ||||||||||||||
seq2  AGTATCGAGGAAATGCCAGGACCAGGAATGGAAATAGGTGGGTTGGGGAG  100

seq1  C--AGGGTTAGGGGAGGGGATAGGGGATTTTCAGAGGGAAAACTAGGAAA  147
      |  ||||   |||||||| | |||||||| ||||||||||||||||||||
seq2  CAGAGGGAAGGGGGAGGGTAGAGGGGATTGTCAGAGGGAAAACTAGGAAA  150

seq1  GAGGATAACATTTGAAATGTAAATAAAGAAAATAGCTAATACA-------  190
      | |||||||||||||||||||||||||||||||| |||||| |       
seq2  GGGGATAACATTTGAAATGTAAATAAAGAAAATATCTAATAAAAGAAAAA  200

seq1  -----------TATATA------------TATATATAATAT  208
                 ||| ||            ||||||||||||
seq2  AGAAAAAATGTTATCTAAGCTACTTCTATTATATATAATAT  241