BAC Information

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BAC

Clone NameB6Ng01-115J05
Chromosome10 (Build37)
Map Location 80,148,533 - 80,327,267
singlet/doubletdoublet
Overlap geneMobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik
Upstream geneCdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2
Downstream geneTmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta, Thop1, Creb3l3, Map2k2, Zbtb7a, Pias4, Eef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6, BC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944, EG210583, EG666738, EG666501, 1700123A16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115J05.bB6Ng01-115J05.g
ACCDH920803DH920804
length1,1261,100
definitionDH920803|Mus musculus domesticus DNA, BAC clone: B6Ng01-115J05, 5' end.DH920804|Mus musculus domesticus DNA, BAC clone: B6Ng01-115J05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,148,533 - 80,149,666)(80,326,161 - 80,327,267)
sequence
gaattcattactggatcccaggttagcccagatactgttcccaggagggt
ggccactagaaaccagttatcagtaatcccaaaaatctccagatgagctg
gctgacacttgggggcagaggcaggtggatctgtgagttggaggccagtc
tggcctacagaataagttccaggacagccagggctacatagtaagagcct
gtctcaaaacaaaaacaaagacaaacaaacaaacaaaaccaaaaatattt
ctgaatagacttgggtttggtaccttacatctttaacaaagcacttggga
tgcagaggcaggaggatctctgtgagttccaggccagtttcaaaaccaaa
ccaacaatgtaaaaaaagaaaggaaatgaagccagccgtgttcacaacag
agccagtctgtgtgtgcgtttgtgtggctgcgcactggggtagcccatgg
ctgcctgattctccctgtcccctgggcaccctatgtctggctctcccagg
ctcctccatgggtgtgggggtcacacatgtgcactcacgctcacgtggca
aacacctccccactgtgcagaaccttaccggttttgttttgtttctttaa
gacagggtctctctgtgtagaccaggccggcctcgaattgacagatctgc
ctgtcactgcctcctgactaggatcaaaggcctgtgccaccctgcctggc
tcctttacatttttttttaagacaatcttgttatgagaccctggctggcc
tgaccattactgtggaggtcagggtggcctcaagtttatagcaatcctcc
ttgcagctgcctgcagagtcttgggatcataggcatgcagtgtatgcacc
cttcctgacctacaaagacccccagaacacccaatactgggagtcctgcc
ctgggggtgctggggggtggcatggcacattagttcatctttggaggtat
gctggctgcctatgtggtcaccacacacaatgtggctgtaaacagaagac
atctggtggcccctccctttcaaggttggcaagtgagggacaaagctgtc
aggcagagagccatggagaaggacaagtggtgatagcatggctcagatct
gcctcctctcggaggcatggacatac
gaattcagtgcaggagaaaatggagcttctatcgccacggggtggacggc
aagtggcacctgggcatcaggtgctgcctgagcccacgccaagatgtgag
tgacaaatagtggctctgggccagcatgtccccttgccctgcccaggagc
taggcgaaggatggacagaacccttatctagattcctatcggggtgtggg
ctcttggccaggcctaaatgaaacgggacacgggcaggcggcagccgtgg
tgtgtagccctaaagatgggaagcccaaggcctcactgggcagcgggggc
acccgaggacagcagtgagaagccgacagggtggatgtcagaagagcctg
ggacaaagcaacacttactggtcctcatttcggaagataccccacaccac
ggagacagtgacacagaagagtgccagcagcagcatgcgggcctgtgggc
gcttgtggaagtacggcaggttgttgtcggggaccctggaggggaccacc
cgtcagcgtccctcttccctcacctcaacaccaccctgagcctcgattgc
atgctggcttgtgcctgccgtcccctctcagccctgagtaggagccctga
ctatgtggcatgtccctctggctctaggatagcaaccctaaaggcctcca
ccctgtggctgctggcctcacctagccacaggtggctctgaagcagtgcc
atccaggggcaggtagagctttggaggcctatgatgttgccactcccttc
ccagcctaccatccttggcctcactctctgggacccccgtgtcataccct
gtggctcagttagacaggaaggggtatacagtgcacaggcaactagagcc
ccaaagcctacccaacccatgaccagcacttagtaagcacctccctggat
ctctgaatacgccaggagggtaggagactgcaggaggaggaaggaggggg
cctgtttaggcctggctcacctgcacgtgcagaaggcagctttcgcacaa
gggtgccgacagctgtaaaagaccgtggaaggagccagcaaaaaatccat
gatcacgtagactggcgggtcagcaggcatgccgcaggtaacagtgaggg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_80148533_80149666
seq2: B6Ng01-115J05.b_49_1174

seq1  GAATTCATTACTGGATCCCAGGTTAGCCCAGATACTGTTCCCAGGAGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTACTGGATCCCAGGTTAGCCCAGATACTGTTCCCAGGAGGGT  50

seq1  GGCCACTAGAAACCAGTTATCAGTAATCCCAAAAATCTCCAGATGAGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTAGAAACCAGTTATCAGTAATCCCAAAAATCTCCAGATGAGCTG  100

seq1  GCTGACACTTGGGGGCAGAGGCAGGTGGATCTGTGAGTTGGAGGCCAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACACTTGGGGGCAGAGGCAGGTGGATCTGTGAGTTGGAGGCCAGTC  150

seq1  TGGCCTACAGAATAAGTTCCAGGACAGCCAGGGCTACATAGTAAGAGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTACAGAATAAGTTCCAGGACAGCCAGGGCTACATAGTAAGAGCCT  200

seq1  GTCTCAAAACAAAAACAAAGACAAACAAACAAACAAAACCAAAAATATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAAACAAAAACAAAGACAAACAAACAAACAAAACCAAAAATATTT  250

seq1  CTGAATAGACTTGGGTTTGGTACCTTACATCTTTAACAAAGCACTTGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATAGACTTGGGTTTGGTACCTTACATCTTTAACAAAGCACTTGGGA  300

seq1  TGCAGAGGCAGGAGGATCTCTGTGAGTTCCAGGCCAGTTTCAAAACCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGGCAGGAGGATCTCTGTGAGTTCCAGGCCAGTTTCAAAACCAAA  350

seq1  CCAACAATGTAAAAAAAGAAAGGAAATGAAGCCAGCCGTGTTCACAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAATGTAAAAAAAGAAAGGAAATGAAGCCAGCCGTGTTCACAACAG  400

seq1  AGCCAGTCTGTGTGTGCGTTTGTGTGGCTGCGCACTGGGGTAGCCCATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTCTGTGTGTGCGTTTGTGTGGCTGCGCACTGGGGTAGCCCATGG  450

seq1  CTGCCTGATTCTCCCTGTCCCCTGGGCACCCTATGTCTGGCTCTCCCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGATTCTCCCTGTCCCCTGGGCACCCTATGTCTGGCTCTCCCAGG  500

seq1  CTCCTCCATGGGTGTGGGGGTCACACATGTGCACTCACGCTCACGTGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCATGGGTGTGGGGGTCACACATGTGCACTCACGCTCACGTGGCA  550

seq1  AACACCTCCCCACTGTGCAGAACCTTACCGGTTTTGTTTTGTTTCTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCTCCCCACTGTGCAGAACCTTACCGGTTTTGTTTTGTTTCTTTAA  600

seq1  GACAGGGTCTCTCTGTGTAGACCAGGCCGGCCTCGAATTGACAGATCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGTCTCTCTGTGTAGACCAGGCCGGCCTCGAATTGACAGATCTGC  650

seq1  CTGTCACTGCCTCCTGACTAGGATCAAAGGCCTGTGCCACCCTGCCTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACTGCCTCCTGACTAGGATCAAAGGCCTGTGCCACCCTGCCTGGC  700

seq1  TCCTTTACATTTTTTTTTAAGACAATCTTGTTATGAGACCCTGGCTGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTACATTTTTTTTTAAGACAATCTTGTTATGAGACCCTGGCTGGCC  750

seq1  TGACCATTACTGTGGAGGTCAGGGTGGCCTCAAGTTTATAGCAATCCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATTACTGTGGAGGTCAGGGTGGCCTCAAGTTTATAGCAATCCTCC  800

seq1  TTGCAGCTGCCTGCAGAGTCTTGGGATCATAGGCATGCAGTGTATGCACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCTGCCTGCAGAGTCTTGGGATCATAGGCATGCAGTGTATGCACC  850

seq1  CTTCCTGACCTACAAAGACCCCCAGAACACCCAATACTGGGAGTCCTGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGACCTACAAAGACCCCCAGAACACCCAATACTGGGAGTCCTGCC  900

seq1  CTGGGGGTGCT-GGGGGTGGCATGGCACATTAGTTCATCTTTGGAGGTAT  949
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGTGCTGGGGGGTGGCATGGCACATTAGTTCATCTTTGGAGGTAT  950

seq1  GCTGGCTGCCTATGTGGTCACCCACACACAATGTGGCTGTAAACAGAAGA  999
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCTGGCTGCCTATGTGGTCA-CCACACACAATGTGGCTGTAAACAGAAGA  999

seq1  CATCTGGTGGCCCCTCCCCTTCCAGGTTGGCAAGTGAGGGACAAAGCTGT  1049
      |||||||||||||||||| ||| |||||||||||||||||||||||||||
seq2  CATCTGGTGGCCCCTCCCTTTCAAGGTTGGCAAGTGAGGGACAAAGCTGT  1049

seq1  CAGGGCAGAGAGCCATGGAGAAGGGACAAGTGGTGGTTAGCAGTGGCTCC  1099
      || ||||||||||||||||||| ||||||||||| | ||||| ||||| |
seq2  CA-GGCAGAGAGCCATGGAGAA-GGACAAGTGGT-GATAGCA-TGGCT-C  1094

seq1  AGATCCTGCCTCCTCTCGGAGGCCATGGCACATAC  1134
      |||| ||||||||||||||||| ||||| ||||||
seq2  AGAT-CTGCCTCCTCTCGGAGG-CATGG-ACATAC  1126

seq1: chr10_80326161_80327267
seq2: B6Ng01-115J05.g_68_1167 (reverse)

seq1  CCCTCACTGTT-CCTGCGCCCTGCCTGCCTGGCCCCGCAGTCTACGTGAT  49
      ||||||||||| |||||| | |||||| ||| |||  |||||||||||||
seq2  CCCTCACTGTTACCTGCGGCATGCCTG-CTGACCCGCCAGTCTACGTGAT  49

seq1  CATTGGAATCTTCTGCCTGGCCTCCTCCACCGGTC-TCTACAGCTGTCTG  98
      |||  | || || || |||| ||||| |  ||||| | |||||||||| |
seq2  CAT--GGATTTTTTG-CTGG-CTCCTTCCACGGTCTTTTACAGCTGTC-G  94

seq1  GCACCCTTTGTGCGGAAGCTGCCCTTCTGCACGTGCAGGTGAGGCCCAGG  148
      |||||| ||||||| |||||| |||||||||||||||||||||  |||||
seq2  GCACCC-TTGTGCGAAAGCTG-CCTTCTGCACGTGCAGGTGAG--CCAGG  140

seq1  CCTAACCAGGCCCCCTCCTTCCTCCTCCTGCAGTCTCCTACCCTCCTGGC  198
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACAGGCCCCCTCCTTCCTCCTCCTGCAGTCTCCTACCCTCCTGGC  190

seq1  GTATTCAGAGATCCA-GGAGGTGCTTACTAAGTGCTGGTCATGGGTTGGG  247
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTATTCAGAGATCCAGGGAGGTGCTTACTAAGTGCTGGTCATGGGTTGGG  240

seq1  TAGGCTTTGGGGCTCTAGTTGCCTGTGCACTGTATACCCCTTCCTGTCTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTTTGGGGCTCTAGTTGCCTGTGCACTGTATACCCCTTCCTGTCTA  290

seq1  ACTGAGCCACAGGGTATGACACGGGGGTCCCAGAGAGTGAGGCCAAGGAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCCACAGGGTATGACACGGGGGTCCCAGAGAGTGAGGCCAAGGAT  340

seq1  GGTAGGCTGGGAAGGGAGTGGCAACATCATAGGCCTCCAAAGCTCTACCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGCTGGGAAGGGAGTGGCAACATCATAGGCCTCCAAAGCTCTACCT  390

seq1  GCCCCTGGATGGCACTGCTTCAGAGCCACCTGTGGCTAGGTGAGGCCAGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGGATGGCACTGCTTCAGAGCCACCTGTGGCTAGGTGAGGCCAGC  440

seq1  AGCCACAGGGTGGAGGCCTTTAGGGTTGCTATCCTAGAGCCAGAGGGACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAGGGTGGAGGCCTTTAGGGTTGCTATCCTAGAGCCAGAGGGACA  490

seq1  TGCCACATAGTCAGGGCTCCTACTCAGGGCTGAGAGGGGACGGCAGGCAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACATAGTCAGGGCTCCTACTCAGGGCTGAGAGGGGACGGCAGGCAC  540

seq1  AAGCCAGCATGCAATCGAGGCTCAGGGTGGTGTTGAGGTGAGGGAAGAGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGCATGCAATCGAGGCTCAGGGTGGTGTTGAGGTGAGGGAAGAGG  590

seq1  GACGCTGACGGGTGGTCCCCTCCAGGGTCCCCGACAACAACCTGCCGTAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCTGACGGGTGGTCCCCTCCAGGGTCCCCGACAACAACCTGCCGTAC  640

seq1  TTCCACAAGCGCCCACAGGCCCGCATGCTGCTGCTGGCACTCTTCTGTGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAAGCGCCCACAGGCCCGCATGCTGCTGCTGGCACTCTTCTGTGT  690

seq1  CACTGTCTCCGTGGTGTGGGGTATCTTCCGAAATGAGGACCAGTAAGTGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCTCCGTGGTGTGGGGTATCTTCCGAAATGAGGACCAGTAAGTGT  740

seq1  TGCTTTGTCCCAGGCTCTTCTGACATCCACCCTGTCGGCTTCTCACTGCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGTCCCAGGCTCTTCTGACATCCACCCTGTCGGCTTCTCACTGCT  790

seq1  GTCCTCGGGTGCCCCCGCTGCCCAGTGAGGCCTTGGGCTTCCCATCTTTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCGGGTGCCCCCGCTGCCCAGTGAGGCCTTGGGCTTCCCATCTTTA  840

seq1  GGGCTACACACCACGGCTGCCGCCTGCCCGTGTCCCGTTTCATTTAGGCC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTACACACCACGGCTGCCGCCTGCCCGTGTCCCGTTTCATTTAGGCC  890

seq1  TGGCCAAGAGCCCACACCCCGATAGGAATCTAGATAAGGGTTCTGTCCAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAAGAGCCCACACCCCGATAGGAATCTAGATAAGGGTTCTGTCCAT  940

seq1  CCTTCGCCTAGCTCCTGGGCAGGGCAAGGGGACATGCTGGCCCAGAGCCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCGCCTAGCTCCTGGGCAGGGCAAGGGGACATGCTGGCCCAGAGCCA  990

seq1  CTATTTGTCACTCACATCTTGGCGTGGGCTCAGGCAGCACCTGATGCCCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGTCACTCACATCTTGGCGTGGGCTCAGGCAGCACCTGATGCCCA  1040

seq1  GGTGCCACTTGCCGTCCACCCCGTGGCGATAGAAGCTCCATTTTCTCCTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCACTTGCCGTCCACCCCGTGGCGATAGAAGCTCCATTTTCTCCTG  1090

seq1  CACTGAATTC  1107
      ||||||||||
seq2  CACTGAATTC  1100