BAC Information

Click to search

BAC

Clone NameB6Ng01-116G08
Chromosome10 (Build37)
Map Location 77,935,560 - 78,080,186
singlet/doubletdoublet
Overlap geneEG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357
Upstream gene1810008A18Rik, Itgb2, Pttg1ip, Sumo3, Ube2g2, LOC674243, LOC670895, Krtap12-1, A030009A09Rik, LOC100041250, LOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351, 1700009J07Rik, Lrrc3, Trpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl, D10Jhu81e, Pwp2, Tmem1, Agpat3, LOC100041500, Rrp1, Cstb, Pdxk
Downstream geneLOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765, AJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116G08.bB6Ng01-116G08.g
ACCDH921404DH921405
length4331,040
definitionDH921404|Mus musculus domesticus DNA, BAC clone: B6Ng01-116G08, 5' end.DH921405|Mus musculus domesticus DNA, BAC clone: B6Ng01-116G08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,079,640 - 78,080,186)(77,935,560 - 77,936,599)
sequence
tgataaccttcctgaacttcctttcagcatctcttccacctccaaggagc
ttgctcttgtagcagctaccttaacctctccattgctctcactatacctt
gggatgttaggtttcatctgttcatgttcttcctcctctctgttgtttct
ttgtttgggcaattgggtttgggcccttgtttgcttttctttctccttct
agaggcagtgtctcatgtagcctaggaaggccttgagcttccccagggcc
tgcagatagtgtacatgctgccactgaaccatactcctaaccaaacactt
cctttttcatttttaattttaatttttaaagttaacttataataggtttc
tatatggtatttttcttacatatttcattgtggttagtcttctcctcctc
ctcctcctcctcctcctccactacctcctcctc
gaattcctctaagttagctttcaccttgtgtctggttttattgaatctga
tatgcaaggtcctggaatttagggcatttaatttcattacatttttgttt
gtttgtattagacaagagtttctctctacagctctgtcccgcctgcagct
tgacaggtaggccaggctagtttccagcttgatgcgatcctcctgcctct
gcctctttctcacaagtactaggactacagtcttgcctcacaatgcctgg
ccaaaagttagtttgtatatgatggttataggaattgaatttaggactca
ggcttgccatacattctgccctgcttttagttttttgacacaggattttg
ccattagaccaggttggtctaggaatcccagtggtctttctgcttctgtt
ttgtaaaggtaccaccatgaacagattcatgtcttggctgctttagaact
catagcaatcctcccatctctgcttctctagtgcttggattgcaaggaga
gtgtgacactaaacataaggtgtcacatgtggccaggagtagaggctcag
ctcatggctgtatctctgagtggagggttagcaaatggttatctcagagg
gcagaggtctggaagctatctcaggtggaatgtggcccaccattcactcc
aagatgcaagacaggcgtgtttgtgacttgaatcatcaacctccaactgg
aagccaagccaagcatctaggaagggctggtccacagagccttaaactcc
agaaggtaggtaggtgtgcactataaaaatgtttgccctcatcaagaaac
aactagagcattacaagttcaaaacagccattccccagccaaatgaaaca
aagtccactccatagggaggagcgagtggtctggtgccaaggaccagcct
cagcttgcgttctcaggaacccaagagtgtctgatagtcatgaaacaaag
gacctgagtcaaatcgtggatccaagctggcgacttatcttttgctgaga
cagcttccagactgcttctctccgctcggtatttgttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_78079640_78080186
seq2: B6Ng01-116G08.b_46_484 (reverse)

seq1  GAGGAGGAGGTGGAGAAGGAGAGGGAGGGGTAGCAGGAGGGGAAGGAGGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GGAGGAGGAGGAGGGGGAGGGGAAGGAGGAGGAGGAGGAGGGGAAGAAGG  100
                                                        
seq2  --------------------------------------------------  0

seq1  AGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG  150
              |||||||||| || ||||||||||||||||||||||||||||
seq2  --------GAGGAGGAGGTAGTGGAGGAGGAGGAGGAGGAGGAGGAGGAG  42

seq1  AAGACTAACCACAATGAAATATGTAAGAAAAATACCATATAGAAACCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTAACCACAATGAAATATGTAAGAAAAATACCATATAGAAACCTAT  92

seq1  TATAAGTTAACTTTAAAAATTAAAATTAAAAATGAAAAAGGAAGTGTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTTAACTTTAAAAATTAAAATTAAAAATGAAAAAGGAAGTGTTTG  142

seq1  GTTAGGAGTATGGTTCAGTGGCAGCATGTACACTATCTGCAGGCCCTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGAGTATGGTTCAGTGGCAGCATGTACACTATCTGCAGGCCCTGGG  192

seq1  GAAGCTCAAGGCCTTCCTAGGCTACATGAGACACTGCCTCTAGAAGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCAAGGCCTTCCTAGGCTACATGAGACACTGCCTCTAGAAGGAGA  242

seq1  AAGAAAAGCAAACAAGGGCCCAAACCCAATTGCCCAAACAAAGAAACAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGCAAACAAGGGCCCAAACCCAATTGCCCAAACAAAGAAACAAC  292

seq1  AGAGAGGAGGAAGAACATGAACAGATGAAACCTAACATCCCAAGGTATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGAGGAAGAACATGAACAGATGAAACCTAACATCCCAAGGTATAG  342

seq1  TGAGAGCAATGGAGAGGTTAAGGTAGCTGCTACAAGAGCAAGCTCCTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCAATGGAGAGGTTAAGGTAGCTGCTACAAGAGCAAGCTCCTTGG  392

seq1  AGGTGGAAGAGATGCTGAAAGGAAGTTCAGGAAGGTTATCAGAATTC  547
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAAGAGATGCTGAAAGGAAGTTCAGGAAGGTTATCAGAATTC  439

seq1: chr10_77935560_77936599
seq2: B6Ng01-116G08.g_71_1110

seq1  GAATTCCTCTAAGTTAGCTTTCACCTTGTGTCTGGTTTTATTGAATCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTAAGTTAGCTTTCACCTTGTGTCTGGTTTTATTGAATCTGA  50

seq1  TATGCAAGGTCCTGGAATTTAGGGCATTTAATTTCATTACATTTTTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAAGGTCCTGGAATTTAGGGCATTTAATTTCATTACATTTTTGTTT  100

seq1  GTTTGTATTAGACAAGAGTTTCTCTCTACAGCTCTGTCCCGCCTGCAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTATTAGACAAGAGTTTCTCTCTACAGCTCTGTCCCGCCTGCAGCT  150

seq1  TGACAGGTAGGCCAGGCTAGTTTCCAGCTTGATGCGATCCTCCTGCCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGTAGGCCAGGCTAGTTTCCAGCTTGATGCGATCCTCCTGCCTCT  200

seq1  GCCTCTTTCTCACAAGTACTAGGACTACAGTCTTGCCTCACAATGCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTTCTCACAAGTACTAGGACTACAGTCTTGCCTCACAATGCCTGG  250

seq1  CCAAAAGTTAGTTTGTATATGATGGTTATAGGAATTGAATTTAGGACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGTTAGTTTGTATATGATGGTTATAGGAATTGAATTTAGGACTCA  300

seq1  GGCTTGCCATACATTCTGCCCTGCTTTTAGTTTTTTGACACAGGATTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGCCATACATTCTGCCCTGCTTTTAGTTTTTTGACACAGGATTTTG  350

seq1  CCATTAGACCAGGTTGGTCTAGGAATCCCAGTGGTCTTTCTGCTTCTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAGACCAGGTTGGTCTAGGAATCCCAGTGGTCTTTCTGCTTCTGTT  400

seq1  TTGTAAAGGTACCACCATGAACAGATTCATGTCTTGGCTGCTTTAGAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAGGTACCACCATGAACAGATTCATGTCTTGGCTGCTTTAGAACT  450

seq1  CATAGCAATCCTCCCATCTCTGCTTCTCTAGTGCTTGGATTGCAAGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCAATCCTCCCATCTCTGCTTCTCTAGTGCTTGGATTGCAAGGAGA  500

seq1  GTGTGACACTAAACATAAGGTGTCACATGTGGCCAGGAGTAGAGGCTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACACTAAACATAAGGTGTCACATGTGGCCAGGAGTAGAGGCTCAG  550

seq1  CTCATGGCTGTATCTCTGAGTGGAGGGTTAGCAAATGGTTATCTCAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGCTGTATCTCTGAGTGGAGGGTTAGCAAATGGTTATCTCAGAGG  600

seq1  GCAGAGGTCTGGAAGCTATCTCAGGTGGAATGTGGCCCACCATTCACTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGTCTGGAAGCTATCTCAGGTGGAATGTGGCCCACCATTCACTCC  650

seq1  AAGATGCAAGACAGGCGTGTTTGTGACTTGAATCATCAACCTCCAACTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCAAGACAGGCGTGTTTGTGACTTGAATCATCAACCTCCAACTGG  700

seq1  AAGCCAAGCCAAGCATCTAGGAAGGGCTGGTCCACAGAGCCTTAAACTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAGCCAAGCATCTAGGAAGGGCTGGTCCACAGAGCCTTAAACTCC  750

seq1  AGAAGGTAGGTAGGTGTGCACTATAAAAATGTTTGCCCTCATCAAGAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTAGGTAGGTGTGCACTATAAAAATGTTTGCCCTCATCAAGAAAC  800

seq1  AACTAGAGCATTACAAGTTCAAAACAGCCATTCCCCAGCCAAATGAAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAGCATTACAAGTTCAAAACAGCCATTCCCCAGCCAAATGAAACA  850

seq1  AAGTCCACTCCATAGGGAGGGAGCGAGTGGTCTGGTGCCAAGGACCAGCC  900
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAGTCCACTCCATAGGGA-GGAGCGAGTGGTCTGGTGCCAAGGACCAGCC  899

seq1  TCAGCTTGCGTTCTCAGGGAACCCAAGAGTGTCTGAGAGCCATGAAACAA  950
      |||||||||||||||| ||||||||||||||||||| || ||||||||||
seq2  TCAGCTTGCGTTCTCA-GGAACCCAAGAGTGTCTGATAGTCATGAAACAA  948

seq1  AGGACCTGAAGTCAAATCGTGGATCCAAGCTGGCGACCTATCTTTTGCTT  1000
      |||||||| |||||||||||||||||||||||||||| |||||||||| |
seq2  AGGACCTG-AGTCAAATCGTGGATCCAAGCTGGCGACTTATCTTTTGC-T  996

seq1  GAGACAGCTTCCCAGACTGCTTTCTCTCCGCTC------TGTTTTT  1040
      |||||||||| ||||||||| ||||||||||||      |||||||
seq2  GAGACAGCTT-CCAGACTGC-TTCTCTCCGCTCGGTATTTGTTTTT  1040