BAC Information

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BAC

Clone NameB6Ng01-116I18
Chromosome10 (Build37)
Map Location 102,920,629 - 102,921,733
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667652, Nts, Pamci, LOC382413, Cart1, Lrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697
Downstream geneLOC667701, EG627488, EG667692, EG667695, LOC100043292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116I18.bB6Ng01-116I18.g
ACCDH921517DH921518
length1,1681,091
definitionDH921517|Mus musculus domesticus DNA, BAC clone: B6Ng01-116I18, 5' end.DH921518|Mus musculus domesticus DNA, BAC clone: B6Ng01-116I18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactgtttaattctataccccattttttgattaggttgtttggtt
ttttggagtttagcttcttgagttctttatatttttttggatattagtcc
tgtatcagctgtggagttagtaaagttatcttcccaatctgtagattgtc
aatttgtcctattgactgtgtcttttgtttaacataagcttttcagttta
ggtcccatttatcaattcttgattttttttgtattttaaaattatatttt
atttattttttatttttacttttaaatttttatttatttattcttttaca
ccccagattttatcccaacccctgtccaccctccaactgttccaaatccc
atacctcctccccaaacccctgtctccacaaggatgtcccaacccaacca
accctcaccccacctgacctctaaactcctccagagactggcctccagtc
tcttgagggttatgtgcatcatctctgattgaacacacaatctgcagttc
tctgctgtatatgtgttgggagccttatattagctgatgtgtgctgcctg
tttggtggtccagtgtttgagagatcttgggggtccagattagttgagac
tgctgatcctcctacagggtcacctttctcctcagctgctttcagcattt
ccctaattcaaccacaggggtcagctgcttctgtcaaatggttgggtgca
aatatgtgcacctgactctttcagctgcttgttgggtcttctggagtgag
gtcttgctaggtccttttgtgagcactccatagcctcaataatagtatca
ggccttgggactactacttgagctggattccactttgggcctgtctctga
accttttttttcctcaggctcatctccatttctatccctgtagttctttc
agacagaacaattataggtcagagtttgacatgggatggcaacccctccc
ttatttgatgccctgcttctgctggagtgactctataagttcctctccta
ctgttgggcagttcatctagttcctcctttgattctgggagtctcttatt
cccaaggtcttgagtttcttttagactcccctcttttcctctcattagat
tcagttaatccggctattattgagtccttatccattgaacttgagctttg
tgcagagtaaatagaatc
gaattctccatcttttatattctttgtctgaagggcatgtatctgactgt
taattagagtttccatggaaactactttttggcttgaccaacagggcagt
gttcaaagccaaatttgctggaaagctgcagaatgaagttccaggacaaa
gaaatccagggatttttactcctaactcctaagtagtgacttgtttcaca
attgtggttcaaccgtaggcaaatctgtgcacagggagaacacagattgg
ctcagagaagctaaattagctgatagaagatttaattgtcttttactgaa
gggaaagcaagaatttgagatttgagtttggccaagttaaatccctggat
aaaaatttaaaaacattttggaggaaaataaaagtcaaaacttttacaac
acataatttgtaataccctgggcaaccatctgaaaatattttctgtatga
tgaacacagagagcctgagaagagagccagtctatccaagtgaaattata
aaaatgactggatattatgaaaagaaagtggacgacaacttcattgtcat
taaacataaggcatttatatagagaataatatattaaattaatatgtgga
tatattagaacaaacttagggaatatctttctaacatatcagtaggctaa
actttttatgacacaaaataaatgattttgaagtgtgtctgaaaatttta
taagatgtaaaattattaactatctacctaaaaacctatactatatgtaa
gtctcaagataatgtacatacatagcttaaatgaaatttgctcatatgga
ctgacaaagatccccccaagaacccaactcttatattacagaaagaccaa
catcaggttttgaaaaatatcttgcgaattgtaagggttatccacgagac
tcctagaacgttgcagcctattaatattgccctttattgccctcagaatg
tgaagtagttcatgataatgaactgtacagacctcatgccaaattcttat
ggactagtatgatgtaccagatgcacattcaagctccaagaaaagaaaga
ccacactcaaacccagctatgatggcatatgaccagccaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_102920629_102921733
seq2: B6Ng01-116I18.g_67_1157

seq1  GAATTCTCCATCTTTTATATTCTTTGTCTGAAGGGCATGTATCTGACTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATCTTTTATATTCTTTGTCTGAAGGGCATGTATCTGACTGT  50

seq1  TAATTAGAGTTTCCATGGAAACTACTTTTTGGCTTGACCAACAGGGCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGAGTTTCCATGGAAACTACTTTTTGGCTTGACCAACAGGGCAGT  100

seq1  GTTCAAAGCCAAATTTGCTGGAAAGCTGCAGAATGAAGTTCCAGGACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAAGCCAAATTTGCTGGAAAGCTGCAGAATGAAGTTCCAGGACAAA  150

seq1  GAAATCCAGGGATTTTTACTCCTAACTCCTAAGTAGTGACTTGTTTCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCAGGGATTTTTACTCCTAACTCCTAAGTAGTGACTTGTTTCACA  200

seq1  ATTGTGGTTCAACCGTAGGCAAATCTGTGCACAGGGAGAACACAGATTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGTTCAACCGTAGGCAAATCTGTGCACAGGGAGAACACAGATTGG  250

seq1  CTCAGAGAAGCTAAATTAGCTGATAGAAGATTTAATTGTCTTTTACTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGAAGCTAAATTAGCTGATAGAAGATTTAATTGTCTTTTACTGAA  300

seq1  GGGAAAGCAAGAATTTGAGATTTGAGTTTGGCCAAGTTAAATCCCTGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGCAAGAATTTGAGATTTGAGTTTGGCCAAGTTAAATCCCTGGAT  350

seq1  AAAAATTTAAAAACATTTTGGAGGAAAATAAAAGTCAAAACTTTTACAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTAAAAACATTTTGGAGGAAAATAAAAGTCAAAACTTTTACAAC  400

seq1  ACATAATTTGTAATACCCTGGGCAACCATCTGAAAATATTTTCTGTATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATTTGTAATACCCTGGGCAACCATCTGAAAATATTTTCTGTATGA  450

seq1  TGAACACAGAGAGCCTGAGAAGAGAGCCAGTCTATCCAAGTGAAATTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACAGAGAGCCTGAGAAGAGAGCCAGTCTATCCAAGTGAAATTATA  500

seq1  AAAATGACTGGATATTATGAAAAGAAAGTGGACGACAACTTCATTGTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGACTGGATATTATGAAAAGAAAGTGGACGACAACTTCATTGTCAT  550

seq1  TAAACATAAGGCATTTATATAGAGAATAATATATTAAATTAATATGTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATAAGGCATTTATATAGAGAATAATATATTAAATTAATATGTGGA  600

seq1  TATATTAGAACAAACTTAGGGAATATCTTTCTAACATATCAGTAGGCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTAGAACAAACTTAGGGAATATCTTTCTAACATATCAGTAGGCTAA  650

seq1  ACTTTTTATGACACAAAATAAATGATTTTGAAGTGTGTCTGAAAATTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTATGACACAAAATAAATGATTTTGAAGTGTGTCTGAAAATTTTA  700

seq1  TAAGATGTAAAATTATTAACTATCTACCTAAAAACCTATACTATATGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGTAAAATTATTAACTATCTACCTAAAAACCTATACTATATGTAA  750

seq1  GTCTCAAGATAATGTACATACATAGCTTAAATGAAATTTGCTCATATGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAGATAATGTACATACATAGCTTAAATGAAATTTGCTCATATGGA  800

seq1  CTGACAAAGATCCCCCCAAGAACCCAACTCTTATATTACAGAAAGACCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAAAGATCCCCCCAAGAACCCAACTCTTATATTACAGAAAGACCAA  850

seq1  CATCAGGTTTTGAAAAATAATCTTGCGAATTGTAAGGGTTATCCACGAGA  900
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CATCAGGTTTTGAAAAAT-ATCTTGCGAATTGTAAGGGTTATCCACGAGA  899

seq1  CTCCTAGAACGTTGCAGCCTATTAATATTGCCCTTTATTGCCCCTCAGAA  950
      |||||||||||||||||||||||||||||||||||||||| ||||||| |
seq2  CTCCTAGAACGTTGCAGCCTATTAATATTGCCCTTTATTG-CCCTCAG-A  947

seq1  ATGTGAAGTAGTTCATGATAATGAACTGTAACAGACCTCAATGCCAAATT  1000
      ||||||||||||||||||||||||||||| ||||||||| ||||||||||
seq2  ATGTGAAGTAGTTCATGATAATGAACTGT-ACAGACCTC-ATGCCAAATT  995

seq1  CTTATGGACTAGTATTGATAGTACCAGATGGCACCATACAAGCTCCCAAA  1050
      |||||||||||||| |||| ||||||||| ||| ||| ||||||||  ||
seq2  CTTATGGACTAGTA-TGAT-GTACCAGAT-GCA-CATTCAAGCTCC--AA  1039

seq1  GAAAAGAAAGGACCAACACTCAAACCCAGCTATGAT-GCATATGAACCAG  1099
      ||||||||| |||| ||||||||||||||||||||| ||||||| |||||
seq2  GAAAAGAAA-GACC-ACACTCAAACCCAGCTATGATGGCATATG-ACCAG  1086

seq1  CACAAC  1105
      | ||||
seq2  C-CAAC  1091