BAC Information

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BAC

Clone NameB6Ng01-116M06
Chromosome10 (Build37)
Map Location 103,754,175 - 103,875,403
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701, EG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116M06.bB6Ng01-116M06.g
ACCDH921682DH921683
length1,1001,130
definitionDH921682|Mus musculus domesticus DNA, BAC clone: B6Ng01-116M06, 5' end.DH921683|Mus musculus domesticus DNA, BAC clone: B6Ng01-116M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,754,175 - 103,755,276)(103,874,252 - 103,875,403)
sequence
gaattcccctacattaggacttagagccttcacagaacttaggtcctctc
ctttcattgataactgacaatgccatcacctgctacatctgcagctagag
ccataggtccttccatgtgtactctttggttggtggttattccctgggag
ctttggggatactggttgattcatattgttgttcctgattatccagtatt
ttaactcctttttacatcactttgacataagcctaacagaaaatgttgta
gagacagaatgttttcttttggtttgtaagaatacagtgtatcatgttgg
aaggcacagtggcagcattgtggttatatcacctctttgatcaggaacct
tctaaatactttgatacagcaggaaacttgaacagacaatcttgctgtgc
ctatccacccttgtcatgatgagctcaccagagactaaactactcgatgt
gcatcacggccctctcaaagtttttatagagttgtgtttagcaaaaaaga
actacgaacagattataaataaagtagagaatgagtatatattcatgtat
tcaacaatattttttatcttatggttttcacatccctaaatgggatgtca
aattttatatatttgtacatatatatacataaatttatacatatatatta
aaattaattaattttaaactccagactttattcccctctggttatttttt
ttaataatcattccattcatttacatttcaaatgatatcccacttcccac
tttcaggttaccccctccaccaacaccgcatctcacatttggcctcccca
cccccatttgtctatatgagagtgctcacccacccatctacactctccca
cccaaccactccagtatccccctactctgaggcatccaacattcccggga
acaagggccttcctctaactgctgtcaggaaaggctattctttgctacat
atggatttggagccaagtagactccttgattggtgatctagacttttggg
gagaactggggtggtcaggtcagcctctattgtccttctaatggggtgca
tccctatgctcacccagtccttctgccatcaccccccccaggtccctgag

gaattctgacagaaagatccctgttttcatgggtgtaaataaataaaagc
cctgcacattgttatgccttaaaaagagaaaatcattttaaataacaaaa
caatttcatgtagcccatatattcagatcaaagaggcaaggagaactcaa
agcagtctttcccttttctagtattaaagacaacagaacataatattttc
tctatcactcaaaagattgtgagaaatctcaggtatcctatcatataatg
ctaaatcctattagtaaaacaaacaaacaaacaaaaaagttggggtatac
gtcaaagtatttagtatataatttattaatctatgtgctaagataaactt
ctgaggtcaataaatgagtccaggaaggatatgtctaaaagtaattctca
gggagattattagtttgaaatttttattaatgaaacgggatgactgaaat
ctcatcaagaagaactcaattagaatgaagagtgtaatacagttgcaact
taattttagagatgtgataaaataataatgattgtgggcttcaactgtaa
ccatttctgggactcactttgtcttgaaataataagactggtgagaatat
caggaatatacttttggtaggaaggaaacaacaaattcccatgtgttgag
atctttagattttacatcaaagcactaagaagactttctaaaatataaag
tctgctatttaagattgcaagggcagatatctttaaataatgttaaaaca
ttgctggtacaggataatatggaaaaaactaataaaatcaatgttaaaga
tcatgcaagttataaatagttgctctcttttatcagtagtacagcttgat
ctagaaggaaaagaaaaatatttaatttccattcctatttttcttgtgtg
catatgctttgaggcagtataaattattttacaaaataaaatatataggt
gcatttctaaatgtaatctacatgattatggtgtgattgtgttacccacg
aatcaaaatattgggaaattttttcgacaagcaaaatgtgaacataatat
tagagttggagagtctgtttggcatgacaatcagaatttgatttctcaaa
ctatcacattatcattatcaccctactttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_103754175_103755276
seq2: B6Ng01-116M06.b_46_1145

seq1  GAATTCCCCTACATTAGGACTTAGAGCCTTCACAGAACTTAGGTCCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTACATTAGGACTTAGAGCCTTCACAGAACTTAGGTCCTCTC  50

seq1  CTTTCATTGATAACTGACAATGCCATCACCTGCTACATCTGCAGCTAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATTGATAACTGACAATGCCATCACCTGCTACATCTGCAGCTAGAG  100

seq1  CCATAGGTCCTTCCATGTGTACTCTTTGGTTGGTGGTTATTCCCTGGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGGTCCTTCCATGTGTACTCTTTGGTTGGTGGTTATTCCCTGGGAG  150

seq1  CTTTGGGGATACTGGTTGATTCATATTGTTGTTCCTGATTATCCAGTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGGATACTGGTTGATTCATATTGTTGTTCCTGATTATCCAGTATT  200

seq1  TTAACTCCTTTTTACATCACTTTGACATAAGCCTAACAGAAAATGTTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCCTTTTTACATCACTTTGACATAAGCCTAACAGAAAATGTTGTA  250

seq1  GAGACAGAATGTTTTCTTTTGGTTTGTAAGAATACAGTGTATCATGTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGAATGTTTTCTTTTGGTTTGTAAGAATACAGTGTATCATGTTGG  300

seq1  AAGGCACAGTGGCAGCATTGTGGTTATATCACCTCTTTGATCAGGAACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACAGTGGCAGCATTGTGGTTATATCACCTCTTTGATCAGGAACCT  350

seq1  TCTAAATACTTTGATACAGCAGGAAACTTGAACAGACAATCTTGCTGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATACTTTGATACAGCAGGAAACTTGAACAGACAATCTTGCTGTGC  400

seq1  CTATCCACCCTTGTCATGATGAGCTCACCAGAGACTAAACTACTCGATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCACCCTTGTCATGATGAGCTCACCAGAGACTAAACTACTCGATGT  450

seq1  GCATCACGGCCCTCTCAAAGTTTTTATAGAGTTGTGTTTAGCAAAAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCACGGCCCTCTCAAAGTTTTTATAGAGTTGTGTTTAGCAAAAAAGA  500

seq1  ACTACGAACAGATTATAAATAAAGTAGAGAATGAGTATATATTCATGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACGAACAGATTATAAATAAAGTAGAGAATGAGTATATATTCATGTAT  550

seq1  TCAACAATATTTTTTATCTTATGGTTTTCACATCCCTAAATGGGATGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAATATTTTTTATCTTATGGTTTTCACATCCCTAAATGGGATGTCA  600

seq1  AATTTTATATATTTGTACATATATATACATAAATTTATACATATATATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATATATTTGTACATATATATACATAAATTTATACATATATATTA  650

seq1  AAATTAATTAATTTTAAACTCCAGACTTTATTCCCCTCTGGTTATTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATTAATTTTAAACTCCAGACTTTATTCCCCTCTGGTTATTTTTT  700

seq1  TTAATAATCATTCCATTCATTTACATTTCAAATGATATCCCACTTCCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAATCATTCCATTCATTTACATTTCAAATGATATCCCACTTCCCAC  750

seq1  TTTCAGGTTACCCCCTCCACCAACACCGCATCTCACATTTGGCCTCCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGTTACCCCCTCCACCAACACCGCATCTCACATTTGGCCTCCCCA  800

seq1  CCCCCATTTGTCTATATGAGAGTGCTCACCCACCCATCTACACTCTCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATTTGTCTATATGAGAGTGCTCACCCACCCATCTACACTCTCCCA  850

seq1  CCCAACCACTCCAGTATCCCCCTACTCTGAGGCATCCAACATTCCCGGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACCACTCCAGTATCCCCCTACTCTGAGGCATCCAACATTCCCGGGA  900

seq1  ACAAGGGCCTTCCTCTAACTGCTGTCAGGAAAGGCTATTCTTTGCTACAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGCCTTCCTCTAACTGCTGTCAGGAAAGGCTATTCTTTGCTACAT  950

seq1  ATGGATTTGGAGCCAAGTAGACTCCTTGATTGGTGATCTAGACTTTT-GG  999
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATGGATTTGGAGCCAAGTAGACTCCTTGATTGGTGATCTAGACTTTTGGG  1000

seq1  GAGAACT-GGGTGGTCAGGTCAGCCTCTATTGTTCTTCTAATGGGGTTGC  1048
      ||||||| ||||||||||||||||||||||||| |||||||||||| |||
seq2  GAGAACTGGGGTGGTCAGGTCAGCCTCTATTGTCCTTCTAATGGGG-TGC  1049

seq1  AATCCCCTATGCTCACCCAGTCCTTCTGCCATCACCCCCACCAGGTTCCC  1098
      |   ||||||||||||||||||||||||||||||||||| ||||| ||||
seq2  A--TCCCTATGCTCACCCAGTCCTTCTGCCATCACCCCCCCCAGG-TCCC  1096

seq1  TGAG  1102
      ||||
seq2  TGAG  1100

seq1: chr10_103874252_103875403
seq2: B6Ng01-116M06.g_68_1197 (reverse)

seq1  AAAAGTAAGAGTGATAAATTGATAATTGTGATAGTTTTGAGAAATCAAAT  50
      |||||| || |||||||  |||||| |||||||| |||||||||||||||
seq2  AAAAGT-AGGGTGATAA--TGATAA-TGTGATAG-TTTGAGAAATCAAAT  45

seq1  TTTCTTGATTGGTCATGCCAAAACAGACTTCTCCAAACTCTAAATAATAA  100
      |    ||||| |||||||| |||||||| ||||| ||||||||   || |
seq2  T---CTGATT-GTCATGCC-AAACAGAC-TCTCC-AACTCTAA--TATTA  86

seq1  TGTTTCAACATTTTGCTTGTCGAAAAAATTTTCCCAAATATTTTTGATTC  150
      ||||   ||||||||||||||||||||||||  || |||| |||||||||
seq2  TGTT--CACATTTTGCTTGTCGAAAAAATTT--CCCAATA-TTTTGATTC  131

seq1  GTGGGTAACACAATCACACCATAATCATGTAGATTACATTTAAGAAATGC  200
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTGGGTAACACAATCACACCATAATCATGTAGATTACATTT-AGAAATGC  180

seq1  ACCTATATATTTTATTTTGTAAAATAATTTATACCTGCCTCAAAGCATAT  250
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACCTATATATTTTATTTTGTAAAATAATTTATA-CTGCCTCAAAGCATAT  229

seq1  GCACACAAGAAAAATAGGGAATGGAAATTAAATATTTTTCTTTTCCTTCT  300
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GCACACAAGAAAAATA-GGAATGGAAATTAAATATTTTTCTTTTCCTTCT  278

seq1  AGATCAAGCTGTACTACTGATAAAAGAGAGCAACTATTTATAACTTGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAAGCTGTACTACTGATAAAAGAGAGCAACTATTTATAACTTGCAT  328

seq1  GATCTTTAACATTGATTTTATTAGTTTTTTCCATATTATCCTGTACCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTAACATTGATTTTATTAGTTTTTTCCATATTATCCTGTACCAGC  378

seq1  AATGTTTTAACATTATTTAAAGATATCTGCCCTTGCAATCTTAAATAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTAACATTATTTAAAGATATCTGCCCTTGCAATCTTAAATAGCA  428

seq1  GACTTTATATTTTAGAAAGTCTTCTTAGTGCTTTGATGTAAAATCTAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTATATTTTAGAAAGTCTTCTTAGTGCTTTGATGTAAAATCTAAAG  478

seq1  ATCTCAACACATGGGAATTTGTTGTTTCCTTCCTACCAAAAGTATATTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAACACATGGGAATTTGTTGTTTCCTTCCTACCAAAAGTATATTCC  528

seq1  TGATATTCTCACCAGTCTTATTATTTCAAGACAAAGTGAGTCCCAGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTCTCACCAGTCTTATTATTTCAAGACAAAGTGAGTCCCAGAAAT  578

seq1  GGTTACAGTTGAAGCCCACAATCATTATTATTTTATCACATCTCTAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACAGTTGAAGCCCACAATCATTATTATTTTATCACATCTCTAAAAT  628

seq1  TAAGTTGCAACTGTATTACACTCTTCATTCTAATTGAGTTCTTCTTGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTGCAACTGTATTACACTCTTCATTCTAATTGAGTTCTTCTTGATG  678

seq1  AGATTTCAGTCATCCCGTTTCATTAATAAAAATTTCAAACTAATAATCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCAGTCATCCCGTTTCATTAATAAAAATTTCAAACTAATAATCTC  728

seq1  CCTGAGAATTACTTTTAGACATATCCTTCCTGGACTCATTTATTGACCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAATTACTTTTAGACATATCCTTCCTGGACTCATTTATTGACCTC  778

seq1  AGAAGTTTATCTTAGCACATAGATTAATAAATTATATACTAAATACTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTTATCTTAGCACATAGATTAATAAATTATATACTAAATACTTTG  828

seq1  ACGTATACCCCAACTTTTTTGTTTGTTTGTTTGTTTTACTAATAGGATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTATACCCCAACTTTTTTGTTTGTTTGTTTGTTTTACTAATAGGATTT  878

seq1  AGCATTATATGATAGGATACCTGAGATTTCTCACAATCTTTTGAGTGATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTATATGATAGGATACCTGAGATTTCTCACAATCTTTTGAGTGATA  928

seq1  GAGAAAATATTATGTTCTGTTGTCTTTAATACTAGAAAAGGGAAAGACTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAATATTATGTTCTGTTGTCTTTAATACTAGAAAAGGGAAAGACTG  978

seq1  CTTTGAGTTCTCCTTGCCTCTTTGATCTGAATATATGGGCTACATGAAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGTTCTCCTTGCCTCTTTGATCTGAATATATGGGCTACATGAAAT  1028

seq1  TGTTTTGTTATTTAAAATGATTTTCTCTTTTTAAGGCATAACAATGTGCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTATTTAAAATGATTTTCTCTTTTTAAGGCATAACAATGTGCA  1078

seq1  GGGCTTTTATTTATTTACACCCATGAAAACAGGGATCTTTCTGTCAGAAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTTATTTATTTACACCCATGAAAACAGGGATCTTTCTGTCAGAAT  1128

seq1  TC  1152
      ||
seq2  TC  1130