BAC Information

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BAC

Clone NameB6Ng01-117I05
Chromosome10 (Build37)
Map Location 3,672,630 - 3,803,858
singlet/doubletdoublet
Overlap genenone
Upstream geneCnksr3, Oprm1, A130090K04Rik
Downstream geneLOC237252, LOC100041224, Rgs17, Mtrf1l, Fbxo5, LOC666395, Vip, Myct1, Syne1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117I05.bB6Ng01-117I05.g
ACCDH922235DH922236
length1,151948
definitionDH922235|Mus musculus domesticus DNA, BAC clone: B6Ng01-117I05, 5' end.DH922236|Mus musculus domesticus DNA, BAC clone: B6Ng01-117I05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,802,692 - 3,803,858)(3,672,630 - 3,674,050)
sequence
gaattctccgactctactgtatcacagcattaacattgtattccacaact
acacatttcatcacaataagtgacccctagctgtaaatttattttaagta
tcatctaatagaacacattttatatgatcaaaaccaaaatgaacaaaaca
atacaaacaaacaaaaccctaaactattattggaaaaaccaaatagtgta
acattttagaatgtcaaaatacagtgttaattacttatttctggcctcaa
aaggcatgcttacagtaatttactgaaataagatgattttaatggtttcc
actgtctggaaacagagagtctagtcttactgtaaaccagattccaagat
taaatttaaaagacattcaaatgagatttcagtttctttattaaaacaaa
atataagcttaataacaaatcccttctcaatgtcaaagtgggtcaagata
aggagatttagatatttagcaaaggttcaatataaatccctagatagagt
ttcaaaactagactataatgttcagggagcaaaatatttactttaattgg
gggaggagatatcaataagttagatattataaggataagatttaaatttg
tcacaagatagacttttacatgtttagaggaattcagtgaagagattcac
cccacccttatatgaatcctagttacttttctattaccatgacaaaacac
catgaccaaggctacttgtagtataaagcatttaatttgagatgtcatag
ttctagagaatgagtctaataccatcatggcagcaagcaaggcagcacgc
aggcatgatgctgaacacaaccactaggcagacagagatgattggtaata
actggctgggcctttgacacctcaagtgatacattcactccaacaaagcc
atacttcctaatccttcccaaacagatccaccaactgagtgctcaagtaa
gtgagcttatgaggtccattctccttcagcccaccacataagtcattggc
tgaattttgtatctagatattgagtaaggtacttcgactttctcatgtca
ttcacctctgacatcagtgtcttttctgaaatcacatggacttgaaatca
catctggcaccactgtttagtctagaaattattgccttataagggccaag
a

gaattcttagggtgggggagagctttccgggtggagatttccagaatgag
gattgatgggatttcaattcccaatcttgggcaatctcaggggtaggtgg
gtgttactgttgaggaattggtgggtttctatttcttggtcctggtgttg
tcagggtgatggtgtcttttctttgcccttttatccttcacattgactct
taatttattattaaattttattttgaaatgaaaaacaaaaccttaaatac
agcagtgaccctggtgtgataaactatgtgaacaagagatggttgcttaa
atttcattgatattttttttctcacctgtaaagccatggttcaaacaagg
tggctatgaaagttctttctcttatagtagtttatttatctatttgttgt
ttccctcttaatttccacagtttccaaatgaagagaaatgtcataggcat
cgaagcacactcacactttttcctctcatagattcacattaaacacaaac
tgatggattgattaaaatttgccagcataaattccatttctctgtagctt
ttgcgtgagtttctcctgccttcgggcaactgtgttagagattattttca
caactgactgcgtggtaataaagttaccaacagctcctcaggaaaaataa
tttccaaccctatgatttttcagatatgtatctatgaggaaatggtaaag
tggtgtgtggaaactcaataagacagatgattcttgtgtgattcttaata
aacctttccagaaagctcatgccagtaagacacaaatgatttagaagggg
agaaaaatcccaggaaaagcccaaaagacacacctgcatgtcttctctag
ataatttacccataaatgctctagctcacagtattaatacattttactga
ttgaaaatggcaggtaatacagcaaccgggaggctctaagacaatgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_3802692_3803858
seq2: B6Ng01-117I05.b_48_1198 (reverse)

seq1  TCTTGGCACATTTAATAAAGCAATAATGTCTAAGAACTATAACAGTGGTG  50
      ||||||| |   | |||| |||||||| ||||   |||| ||||||||||
seq2  TCTTGGCCC---TTATAAGGCAATAATTTCTA--GACTA-AACAGTGGTG  44

seq1  CCAGGATTGGTTGATATCAAGTTCAATGTGATGTCAAGATAAGACACTGA  100
      ||| |||    |||| ||||| || ||||||| || ||| ||||||||||
seq2  CCA-GAT---GTGATTTCAAG-TCCATGTGATTTC-AGAAAAGACACTGA  88

seq1  TGGTTCAGAGGTGAATGACATGAGAAAGTCGAAGGTACCTTACTCAATAT  150
      ||  ||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TG--TCAGAGGTGAATGACATGAGAAAGTCGAA-GTACCTTACTCAATAT  135

seq1  CTTAGATACAAAATTCAGCCAATGACTTATGTGGTGGGCTGAAGGAGAAT  200
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-TAGATACAAAATTCAGCCAATGACTTATGTGGTGGGCTGAAGGAGAAT  184

seq1  GGACCTCATAAGCTCACTTACTTGAGCACTCAGTTGGTGGATCTGTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTCATAAGCTCACTTACTTGAGCACTCAGTTGGTGGATCTGTTTGG  234

seq1  GAAGGATTAGGAAGTATGGCTTTGTTGGAGTGAATGTATCACTTGAGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATTAGGAAGTATGGCTTTGTTGGAGTGAATGTATCACTTGAGGTG  284

seq1  TCAAAGGCCCAGCCAGTTATTACCAATCATCTCTGTCTGCCTAGTGGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGCCCAGCCAGTTATTACCAATCATCTCTGTCTGCCTAGTGGTTG  334

seq1  TGTTCAGCATCATGCCTGCCTGCTGCCTTGCTTGCTGCCATGATGGTATT  400
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGTTCAGCATCATGCCTGCGTGCTGCCTTGCTTGCTGCCATGATGGTATT  384

seq1  AGACTCATTCTCTAGAACTATGACATCTCAAATTAAATGCTTTATACTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCATTCTCTAGAACTATGACATCTCAAATTAAATGCTTTATACTAC  434

seq1  AAGTAGCCTTGGTCATGGTGTTTTGTCATGGTAATAGAAAAGTAACTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCCTTGGTCATGGTGTTTTGTCATGGTAATAGAAAAGTAACTAGG  484

seq1  ATTCATATAAGGGTGGGGTGAATCTCTTCACTGAATTCCTCTAAACATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATATAAGGGTGGGGTGAATCTCTTCACTGAATTCCTCTAAACATGT  534

seq1  AAAAGTCTATCTTGTGACAAATTTAAATCTTATCCTTATAATATCTAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCTATCTTGTGACAAATTTAAATCTTATCCTTATAATATCTAACT  584

seq1  TATTGATATCTCCTCCCCCAATTAAAGTAAATATTTTGCTCCCTGAACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATATCTCCTCCCCCAATTAAAGTAAATATTTTGCTCCCTGAACAT  634

seq1  TATAGTCTAGTTTTGAAACTCTATCTAGGGATTTATATTGAACCTTTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTCTAGTTTTGAAACTCTATCTAGGGATTTATATTGAACCTTTGCT  684

seq1  AAATATCTAAATCTCCTTATCTTGACCCACTTTGACATTGAGAAGGGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTAAATCTCCTTATCTTGACCCACTTTGACATTGAGAAGGGATT  734

seq1  TGTTATTAAGCTTATATTTTGTTTTAATAAAGAAACTGAAATCTCATTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTAAGCTTATATTTTGTTTTAATAAAGAAACTGAAATCTCATTTG  784

seq1  AATGTCTTTTAAATTTAATCTTGGAATCTGGTTTACAGTAAGACTAGACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTTTTAAATTTAATCTTGGAATCTGGTTTACAGTAAGACTAGACT  834

seq1  CTCTGTTTCCAGACAGTGGAAACCATTAAAATCATCTTATTTCAGTAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTTCCAGACAGTGGAAACCATTAAAATCATCTTATTTCAGTAAAT  884

seq1  TACTGTAAGCATGCCTTTTGAGGCCAGAAATAAGTAATTAACACTGTATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTAAGCATGCCTTTTGAGGCCAGAAATAAGTAATTAACACTGTATT  934

seq1  TTGACATTCTAAAATGTTACACTATTTGGTTTTTCCAATAATAGTTTAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATTCTAAAATGTTACACTATTTGGTTTTTCCAATAATAGTTTAGG  984

seq1  GTTTTGTTTGTTTGTATTGTTTTGTTCATTTTGGTTTTGATCATATAAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTGTTTGTATTGTTTTGTTCATTTTGGTTTTGATCATATAAAA  1034

seq1  TGTGTTCTATTAGATGATACTTAAAATAAATTTACAGCTAGGGGTCACTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTATTAGATGATACTTAAAATAAATTTACAGCTAGGGGTCACTT  1084

seq1  ATTGTGATGAAATGTGTAGTTGTGGAATACAATGTTAATGCTGTGATACA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGATGAAATGTGTAGTTGTGGAATACAATGTTAATGCTGTGATACA  1134

seq1  GTAGAGTCGGAGAATTC  1167
      |||||||||||||||||
seq2  GTAGAGTCGGAGAATTC  1151


seq1: chr10_3672630_3674050
seq2: B6Ng01-117I05.g_67_1014

seq1  GAATTCTTAGGGTGGGGGAGAGCTTTCCGGGTGGAGATTTCCAGAATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGGGTGGGGGAGAGCTTTCCGGGTGGAGATTTCCAGAATGAG  50

seq1  GATTGATGGGATTTCAATTCCCAATCTTGGGCAATCTCAGGGGTAGGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGATGGGATTTCAATTCCCAATCTTGGGCAATCTCAGGGGTAGGTGG  100

seq1  GTGTTACTGTTGAGGAATTGGTGGGTTTCTATTTCTTGGTCCTGGTGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTACTGTTGAGGAATTGGTGGGTTTCTATTTCTTGGTCCTGGTGTTG  150

seq1  TCAGGGTGATGGTGTCTTTTCTTTGCCCTTTTATCCTTCACATTGACTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTGATGGTGTCTTTTCTTTGCCCTTTTATCCTTCACATTGACTCT  200

seq1  TAATTTATTATTAAATTTTATTTTGAAATGAAAAACAAAACCTTAAATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTATTATTAAATTTTATTTTGAAATGAAAAACAAAACCTTAAATAC  250

seq1  AGCAGTGACCCTGGTGTGATAAACTATGTGAACAAGAGATGGTTGCTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGACCCTGGTGTGATAAACTATGTGAACAAGAGATGGTTGCTTAA  300

seq1  ATTTCATTGATATTTTTTTTCTCACCTGTAAAGCCATGGTTCAAACAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTGATATTTTTTTTCTCACCTGTAAAGCCATGGTTCAAACAAGG  350

seq1  TGGCTATGAAAGTTCTTTCTCTTATAGTAGTTTATTTATCTATTTGTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATGAAAGTTCTTTCTCTTATAGTAGTTTATTTATCTATTTGTTGT  400

seq1  TTCCCTCTTAATTTCCACAGTTTCCAAATGAAGAGAAATGTCATAGGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCTTAATTTCCACAGTTTCCAAATGAAGAGAAATGTCATAGGCAT  450

seq1  CGAAGCACACTCACACTTTTTCCTCTCATAGATTCACATTAAACACAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGCACACTCACACTTTTTCCTCTCATAGATTCACATTAAACACAAAC  500

seq1  TGATGGATTGATTAAAATTTGCCAGCATAAATTCCATTTCTCTGTAGC-T  549
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGATGGATTGATTAAAATTTGCCAGCATAAATTCCATTTCTCTGTAGCTT  550

seq1  TTGCGTGAGTTTCTCCTGCCTTCGGGCAACTGTGTTAGAGATTATTTTCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGTGAGTTTCTCCTGCCTTCGGGCAACTGTGTTAGAGATTATTTTCA  600

seq1  CAACTGACTGCGTGGTAATAAAGTTACCAACAGCTCCTCAGG-AAAATAA  648
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAACTGACTGCGTGGTAATAAAGTTACCAACAGCTCCTCAGGAAAAATAA  650

seq1  TTTCCAACCCTATGATTTTTCAGATATGTATCTATGAGGAAATGGTAAAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAACCCTATGATTTTTCAGATATGTATCTATGAGGAAATGGTAAAG  700

seq1  TGGTGTGTGGAAACTCAATAAGACAGATGATTCTTGTGGGATTCTTAATA  748
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGGTGTGTGGAAACTCAATAAGACAGATGATTCTTGTGTGATTCTTAATA  750

seq1  AAACCTTCCAGAAAGCTCATGCCAGTAAGACACAAAATGATTTAGAAGGG  798
      || | |||||||||||||||||||||||||||| ||||||||||||||||
seq2  AACCTTTCCAGAAAGCTCATGCCAGTAAGACAC-AAATGATTTAGAAGGG  799

seq1  GAGAAAAATCCCAGG-AAAGCCCAAAAGACACACCTGCATGTCTTCTCTA  847
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAGAAAAATCCCAGGAAAAGCCCAAAAGACACACCTGCATGTCTTCTCTA  849

seq1  GATAATTTACCCTATAAATGCTCATAGCTCACAGAATTAATACATTTTAC  897
      |||||||||||| |||||||||| |||||||||| |||||||||||||||
seq2  GATAATTTACCC-ATAAATGCTC-TAGCTCACAGTATTAATACATTTTAC  897

seq1  TGAATGAAAATGTCAGGTAAATACAGCAACAGGGAGGCTCTAAGAAAAGG  947
      ||| |||||||| ||||| ||||||||||| |||||||||||||| || |
seq2  TGATTGAAAATGGCAGGT-AATACAGCAACCGGGAGGCTCTAAGACAATG  946

seq1  ATAATAACAAACAAAACACAACAATGAACTTCTTTAGTCAAGAAAAGCAC  997
       ||                                               
seq2  -TA-----------------------------------------------  948

seq1  AGATGGGTTGGGGAGATGGCTCAGTGGGCACAATGCTTCAAGTACAAGCA  1047
                                                        
seq2  --------------------------------------------------  948

seq1  GGGGTATTTGAGTTCAGGATTACAGCACCCACATAAATGAGTGGATTGGT  1097
                                                        
seq2  --------------------------------------------------  948

seq1  GTGACACACCTGACACACCAGCACAGTTAGGATGAAGGCAGGAAGATCCA  1147
                                                        
seq2  --------------------------------------------------  948

seq1  AGCACTCACTGACCTGGCATCTTAGCCAAATAGGTCTTCAGGATCATTGA  1197
                                                        
seq2  --------------------------------------------------  948

seq1  GAGACTCTATTTTAGAAAAAATAGTAAAGATTGATAGAAAACTCCTGATA  1247
                                                        
seq2  --------------------------------------------------  948

seq1  CAACTGATATCCACTGTCACTCTCTGGCTTCTTCATATGCACACGTAGTT  1297
                                                        
seq2  --------------------------------------------------  948

seq1  GAACACATACACATGCCTGTGCATACATGCACACAGGCACATACATCAGA  1347
                                                        
seq2  --------------------------------------------------  948

seq1  TTTATAGTTATAAACTGAGACATGAAGGTGCTGTGACTAGAATTCCATAT  1397
                                                        
seq2  --------------------------------------------------  948

seq1  TCAGGTTGAGTGAAAAGCAATGTA  1421
                              
seq2  ------------------------  948


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