BAC Information

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BAC

Clone NameB6Ng01-118C10
Chromosome10 (Build37)17 (Build37)
Map Location 104,053,903 - 104,054,36339,343,235 - 39,343,977
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118C10.bB6Ng01-118C10.g
ACCDH922706DH922707
length530969
definitionDH922706|Mus musculus domesticus DNA, BAC clone: B6Ng01-118C10, 5' end.DH922707|Mus musculus domesticus DNA, BAC clone: B6Ng01-118C10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,903 - 104,054,363)(39,343,235 - 39,343,977)
sequence
gaattctcacctgaggattactgagtggcaaagaagcacctgaaaaatgt
tcaacatccttaatcatcaaggaaatgcaaatcaaaacaaccctgagatt
ccacctcacaccagtcagaatggctaagatgaaaaattcatatgacagca
aatgctggcgaggatgtggagaaagaggaaaactcctacattgtttgtgg
gattgcaagcttgttcaaccactcttgaaatcagtctggtggttcctcag
aaaattggaaattgtactactggaggatccagcaacacttctcctgggca
tatatccagaagatgttccaactggtaaaaatcacacatgctccactatg
ttcatagcagccttatttgtaatagccgggagctgaaaagaacccatatg
cccctcagcaaaggaatggatacaggaaatgtggtacatttacacaatgg
agtactactcagctattaaaaagaatgaatttatgaaattcctaggcaaa
tagatgaacctggagggcatcatcctgagt
gaattcacaccccactctcagcagacagttcattgaaatataaactaaac
ggagaaacagtgaaactaatagtatgaaccaaatggatttaccaaataga
tacataatatttcaaactaataccaagaatataacttattctcagaacct
catggcaccttatccaaaattgaccgtaaaatcagtcacaaaacaagcct
caactaatacaagaagattgatacaagaagattgatacaagaagattgat
acaagaagattgatacaagaagattgaaataatcccatgcatcctatcag
atcatgattattgcccgagcttttgtccctgccggcaagaacacactcag
gacaacctgaatcttctgctgcaaagcttttattgcttacttatcaagag
ggaagacgccaaactgggaaaatggcgctgcttatatagcccgcagcatg
acctttcaacaccttatgtggggtgaaagctcctgattcattgctcaccc
ataaccccattactacgccacgagatgggcagtgactaggcgtgagttca
ctcttgcacttgcgcataaggcttatttactagttaggtgcagtggaagc
cagcaccatcttataatggcaattgctcgtggcacagctctccacatccc
cccctttttattttattaaaatttgaggctggtctaggcctctgcagtca
tgtctatctgctgtggttcctgtcttaggtcattcctccaatgtcacagc
ctctcctgtcatagggtaaccctatcgccaccgggtcccgtgtcttagat
tggtctgtgcatgaggaaagttgcccgtctctggataccgcagtactgtg
tgacagtaactgctaaatgactagggtgaactctataaagatgccagcca
aaaacgaatagtaaaccacagcgagtgtagtgctgatcatgagcgttgag
tctcttacatcccagtgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053903_104054363
seq2: B6Ng01-118C10.b_44_513 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          |||||||||||||||||||||||||| |||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTCCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || |||||| || |||||||||| |||||||||| ||||||| |||||||
seq2  TCCATTCCTTTGCTGAGGGGCATATGGGTTCTTTTCAGCTCCCGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      | |||||||||||||||||| ||||||||||||||||  || ||||| ||
seq2  ACAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTGATTTTTACCAGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      |||  |||||||||||||||||||||| ||| || |||||||||||||| 
seq2  TGGAACATCTTCTGGATATATGCCCAGGAGAAGTGTTGCTGGATCCTCCA  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      ||||||| || ||||||||||||| ||||| |||||| |||||| |||||
seq2  GTAGTACAATTTCCAATTTTCTGAGGAACCACCAGACTGATTTCAAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      ||||| |||||| ||||||||||| ||||||| |||||| ||||||||||
seq2  GGTTGAACAAGCTTGCAATCCCACAAACAATGTAGGAGTTTTCCTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      ||||||||||||||||||| ||||||||  ||||||||| ||||||||||
seq2  TCCACATCCTCGCCAGCATTTGCTGTCATATGAATTTTTCATCTTAGCCA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  400

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
       |||||||||||||||||||||| |||||||||||||||| ||||| || 
seq2  TTGATGATTAAGGATGTTGAACA-TTTTTCAGGTGCTTCTTTGCCACTCA  449

seq1  GTATTCCTCAGGTGAGAATTC  461
      ||| |||||||||||||||||
seq2  GTAATCCTCAGGTGAGAATTC  470

seq1: chr17_39343235_39343977
seq2: B6Ng01-118C10.g_67_809

seq1  GAATTCAAACCCCACTCTCAACAGACAGTTCATTGAAATAGAAACTAAAC  50
      ||||||| |||||||||||| ||||||||||||||||||| |||||||||
seq2  GAATTCACACCCCACTCTCAGCAGACAGTTCATTGAAATATAAACTAAAC  50

seq1  AGAGAAACAGTGAAACTAATAGTATGAACCAAATGGATTTACCAAATAGA  100
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAACAGTGAAACTAATAGTATGAACCAAATGGATTTACCAAATAGA  100

seq1  TACATAATATTTCAAACTAATACCAAGAATATAACTTATTCTCAGAACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAATATTTCAAACTAATACCAAGAATATAACTTATTCTCAGAACCT  150

seq1  CATGGCACCTTATCCAAAATTGACCGTAAAATCAGTCACAAAACAAGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCACCTTATCCAAAATTGACCGTAAAATCAGTCACAAAACAAGCCT  200

seq1  CAACTAATACAAGAAGATTGATACAAGAAGATTGATACAAGAAGATTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAATACAAGAAGATTGATACAAGAAGATTGATACAAGAAGATTGAT  250

seq1  ACAAGAAGATTGATACAAGAAGATTGAAATAATCCCATGCATCCTATCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAGATTGATACAAGAAGATTGAAATAATCCCATGCATCCTATCAG  300

seq1  ATCATGATTATTGCCCGAGCTTTTGTCCCTGCCGGCAAGAACACACTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGATTATTGCCCGAGCTTTTGTCCCTGCCGGCAAGAACACACTCAG  350

seq1  GACAACCTGAATCTTCTGCTGCAAAGCTTTTATTGCTTACTTATCAGGAG  400
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GACAACCTGAATCTTCTGCTGCAAAGCTTTTATTGCTTACTTATCAAGAG  400

seq1  GGAAGACGCCGAACTGGGAAAATGGCGCTGCTTATATAGCCCGCAGCATG  450
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACGCCAAACTGGGAAAATGGCGCTGCTTATATAGCCCGCAGCATG  450

seq1  ACCTTTCAGCACCTTATGTGGCGTGAAAGCTCCTGATTCGTTGCTCACCC  500
      |||||||| |||||||||||| ||||||||||||||||| ||||||||||
seq2  ACCTTTCAACACCTTATGTGGGGTGAAAGCTCCTGATTCATTGCTCACCC  500

seq1  ATAACCCCATTACTACGCCACGAGATGGGCAGTGACTAGGCGTGAGTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCCCATTACTACGCCACGAGATGGGCAGTGACTAGGCGTGAGTTCA  550

seq1  CTCTTGCACTTGCGCATAAGGCTTATTTACTAGTTAGGTGCAGTGGAAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCACTTGCGCATAAGGCTTATTTACTAGTTAGGTGCAGTGGAAGC  600

seq1  CAGCACCATCTTATAATGGCAATTGCTCGTGGCACAGCTCTCCACATCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCATCTTATAATGGCAATTGCTCGTGGCACAGCTCTCCACATCCC  650

seq1  CCCCTTTTTATTTTATTAAAATTTGAGGCTGGTCTAGGCCTCTGCAGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTTTATTTTATTAAAATTTGAGGCTGGTCTAGGCCTCTGCAGTCA  700

seq1  TGTCTATCTGCTGTGGTTCCTGTCTTAGGTCATTCCTCCAATG  743
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATCTGCTGTGGTTCCTGTCTTAGGTCATTCCTCCAATG  743