BAC Information

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BAC

Clone NameB6Ng01-118I03
Chromosome10 (Build37)X (Build37)
Map Location 104,053,903 - 104,054,36392,598,763 - 92,599,933
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118I03.bB6Ng01-118I03.g
ACCDH922968DH922969
length1,0111,156
definitionDH922968|Mus musculus domesticus DNA, BAC clone: B6Ng01-118I03, 5' end.DH922969|Mus musculus domesticus DNA, BAC clone: B6Ng01-118I03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,903 - 104,054,363)(92,598,763 - 92,599,933)
sequence
gaattctcacctgaagaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcatggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgttcaaccactctggaaatcagtctggcggttcctca
ggaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaaaatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacctttatgtcatttttaaattaaagtt
tttattgattccttgcactccaatcccactcatctccctgtcccttcata
tgcacccgttgcccttaaaatcccccaaacaaaacaaaaggaaaatctca
ttgtggaagctgtggtgtgttgttacaacattgttacataatttaccttt
ttgtccacacttctttgcttgcagatgtttattgttatgagtcactggtt
tagttcaaggtctctggcttctgctatactatcaatactggatcctcact
ctgggttttct
gaattctgtctcatagtacgcacatacactgtgggagtgtagattcatat
atattggttgtagataaccaggtacatgactataatgcatagaagtaagt
tgaattgtgtgataatgtttgtgccaagtcaaaactagccttaaaaatac
taacctagcagggctagagatatggaggacccaagttcagattccaaaac
ccacatcaggtgattcatcaccaattgtaactcaaactccaggctttcta
acactattctagtctccagaaacatacacatgacatattctccctctgtc
tctgtctctctctctctctttctatctttgtctctcacagatacacacat
acacatgaatgaaaactttaaaagtatagctatactatatgtagtataat
taagtttaatagaatgatatttatagcaaaagagactatcctgagtggta
aaaaaatattctaatacctatcagaatatctgaagctgagctaagtttgg
tgctgtaacataaaaaatatcctttgatacaccatcggactctgatttct
ttcctaaatgaatacattgaagagatatcatctgactttcctaaaggcta
aatgtgtgcatcctcaaaagttgcacaaatttgaggtaagacataagaat
ttaagggtttaactctcacagttctgtaacatagatcatggtgagaagta
cctgatagtattttcccttcaggatgaaggaagtttttgatataatattt
attttttcatttacaaaatcacagatttttttgttcgctaggagcttact
gtggaaagactgtttcttattttgaatattttcttatcaggtctgaaagt
cttttataataacatatatctccttatattagatatgccttatataagtt
tttacttaaattttgttagatattttctttatttacacttcaatgttatc
ccttttcctgatttcctatccaaaacccctcctctatcccctcctctctc
tgctcacatccacccactctttcttctggcctggcctccctacactgggg
cataatagcttcataggtcaaaggacctcactttcattggatggactgac
tagctgtctctgctacatatgcagctagagacatggagttccctcaaggt
tttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053903_104054363
seq2: B6Ng01-118I03.b_49_519 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          |||||||||||| |||||||||||||||||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  ATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGGGGCATCTTCTGGATATATGCCCAGGAGAGGTATTGCTGGATCCTCCG  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      ||||||||||||||||||| |||| |||||||||||| ||||||||||||
seq2  GTAGTACTATGTCCAATTTCCTGAGGAACCGCCAGACTGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      |||||||||  |||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCCATGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  400

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  450

seq1  GTATTCCTCAGGTGAGAATTC  461
      |||||| ||||||||||||||
seq2  GTATTCTTCAGGTGAGAATTC  471

seq1: chrX_92598763_92599933
seq2: B6Ng01-118I03.g_70_1225 (reverse)

seq1  AAGAAAACACATGGAGGGACT-CATGTCTCTAGCTGCATATGTAGCAGAG  49
      |||||||| | ||  || ||| ||||||||||||||||||||||||||| 
seq2  AAGAAAAC-CTTGAGGGAACTCCATGTCTCTAGCTGCATATGTAGCAGA-  48

seq1  GACAGCTTAGTCAGT-CATCAATGGAAAGTGAGGTCCTTTGACCTATGAA  98
      |||||| |||||||| |||| |  ||||||||||||||||||||||||||
seq2  GACAGC-TAGTCAGTCCATCCAATGAAAGTGAGGTCCTTTGACCTATGAA  97

seq1  GGCTA-TATGCCCCAGTGTAGGGGAGTGCCAGGGCCAGGAAGAGAGAGTG  147
       |||| |||||||||||||| ||||| |||| ||||| ||||| ||||||
seq2  -GCTATTATGCCCCAGTGTA-GGGAG-GCCA-GGCCA-GAAGAAAGAGTG  142

seq1  GGTGGATTGGTGAGCAGGAGGAGGAGGGAGGGGATAGAGGGAGGGGGTTT  197
      |||||||  |||||||    |||   |||||||||||| |||||||  ||
seq2  GGTGGAT--GTGAGCA----GAGAGAGGAGGGGATAGA-GGAGGGG--TT  183

seq1  TTGGATAGGAAATCAGGAAAAGGGATAACATTTGAAGTGTAAATAAAGAA  247
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTGGATAGGAAATCAGGAAAAGGGATAACA-TTGAAGTGTAAATAAAGAA  232

seq1  AATATCTAACAAAATTTAAGTAAAAACTTATATAAGGCATATCTAATATA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTAACAAAATTTAAGTAAAAACTTATATAAGGCATATCTAATATA  282

seq1  AGGAGATATATGTTATTATAAAAGACTTTCAGACCTGATAAGAAAATATT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATATATGTTATTATAAAAGACTTTCAGACCTGATAAGAAAATATT  332

seq1  CAAAATAAGAAACAGTCTTTCCACAGTAAGCTCCTAGCGAACAAAAAAAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAAGAAACAGTCTTTCCACAGTAAGCTCCTAGCGAACAAAAAAAT  382

seq1  CTGTGATTTTGTAAATGAAAAAATAAATATTATATCAAAAACTTCCTTCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATTTTGTAAATGAAAAAATAAATATTATATCAAAAACTTCCTTCA  432

seq1  TCCTGAAGGGAAAATACTATCAGGTACTTCTCACCATGATCTATGTTACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAGGGAAAATACTATCAGGTACTTCTCACCATGATCTATGTTACA  482

seq1  GAACTGTGAGAGTTAAACCCTTAAATTCTTATGTCTTACCTCAAATTTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTGAGAGTTAAACCCTTAAATTCTTATGTCTTACCTCAAATTTGT  532

seq1  GCAACTTTTGAGGATGCACACATTTAGCCTTTAGGAAAGTCAGATGATAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTTTGAGGATGCACACATTTAGCCTTTAGGAAAGTCAGATGATAT  582

seq1  CTCTTCAATGTATTCATTTAGGAAAGAAATCAGAGTCCGATGGTGTATCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAATGTATTCATTTAGGAAAGAAATCAGAGTCCGATGGTGTATCA  632

seq1  AAGGATATTTTTTATGTTACAGCACCAAACTTAGCTCAGCTTCAGATATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATATTTTTTATGTTACAGCACCAAACTTAGCTCAGCTTCAGATATT  682

seq1  CTGATAGGTATTAGAATATTTTTTTACCACTCAGGATAGTCTCTTTTGCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGGTATTAGAATATTTTTTTACCACTCAGGATAGTCTCTTTTGCT  732

seq1  ATAAATATCATTCTATTAAACTTAATTATACTACATATAGTATAGCTATA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATCATTCTATTAAACTTAATTATACTACATATAGTATAGCTATA  782

seq1  CTTTTAAAGTTTTCATTCATGTGTATGTGTGTATCTGTGAGAGACAAAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAAGTTTTCATTCATGTGTATGTGTGTATCTGTGAGAGACAAAGA  832

seq1  TAGAAAGAGAGAGAGAGAGACAGAGACAGAGGGAGAATATGTCATGTGTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGAGAGAGAGAGAGACAGAGACAGAGGGAGAATATGTCATGTGTA  882

seq1  TGTTTCTGGAGACTAGAATAGTGTTAGAAAGCCTGGAGTTTGAGTTACAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGGAGACTAGAATAGTGTTAGAAAGCCTGGAGTTTGAGTTACAA  932

seq1  TTGGTGATGAATCACCTGATGTGGGTTTTGGAATCTGAACTTGGGTCCTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGATGAATCACCTGATGTGGGTTTTGGAATCTGAACTTGGGTCCTC  982

seq1  CATATCTCTAGCCCTGCTAGGTTAGTATTTTTAAGGCTAGTTTTGACTTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTCTAGCCCTGCTAGGTTAGTATTTTTAAGGCTAGTTTTGACTTG  1032

seq1  GCACAAACATTATCACACAATTCAACTTACTTCTATGCATTATAGTCATG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAACATTATCACACAATTCAACTTACTTCTATGCATTATAGTCATG  1082

seq1  TACCTGGTTATCTACAACCAATATATATGAATCTACACTCCCACAGTGTA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGTTATCTACAACCAATATATATGAATCTACACTCCCACAGTGTA  1132

seq1  TGTGCGTACTATGAGACAGAATTC  1171
      ||||||||||||||||||||||||
seq2  TGTGCGTACTATGAGACAGAATTC  1156