BAC Information

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BAC

Clone NameB6Ng01-119B22
Chromosome10 (Build37)
Map Location 115,145,321 - 115,271,219
singlet/doubletdoublet
Overlap geneEG668073, Tspan8
Upstream geneTrhde, 4930473D10Rik, Tph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071
Downstream genePtprr, 4933416C03Rik, Ptprb, Kcnmb4, Cnot2, LOC668080, EG668091, Gm239
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119B22.bB6Ng01-119B22.g
ACCDH923417DH923418
length1,2031,104
definitionDH923417|Mus musculus domesticus DNA, BAC clone: B6Ng01-119B22, 5' end.DH923418|Mus musculus domesticus DNA, BAC clone: B6Ng01-119B22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,269,991 - 115,271,219)(115,145,321 - 115,146,446)
sequence
gaattcaacaacacaccctccctcacacagatagattattagttccacct
ctggcttgcaagctccctcccccagcctcatccttctcttcagtttccct
cactacagtatggttttactgattcctcccacaatggggtctgtcttagg
gttttctctatcactgaacgcagtgtctgacaaacagaaacacgatcacg
ttgcatgactgactgaaggagtgaaggcgtgactcattaaaatgtgtctt
cttttagactctgaagtttagagcaaactcagatttaagccgataggttg
gcatacactgtgtgaagctgtctctctgtccttcctcacctacctaaggc
attctctgattggctttaatgaatatctgatggccaattagctaggcagg
aagtggaaggcgggacttgctggaagggaaaaaggaactctgggaaggag
aaggaggagaggccttttgtccggagacttgggaagagatgttctggtaa
caggcttgcaaagtatagctacccgtgtggctggatgaggctagtaggtt
gggttaacttcgatgagttagttcagggtctgaccagctaaggctttgaa
atattaacaggtttctgtgtgattgtttgggaaaaggcagccatattaac
ttccaacattagttaatataagcaggacataatgatactttaatgtatac
tgatgtagtccaaaacctatgccatagtatcttccataaacaaattctct
aaagttagtcagggtttcattaagcttggcaaggacaagtcttgtgacat
cacagataacccttgggggtctgaagggtggggttgcctaccaagagaag
catgcaccggctttctttcacagctccacagcatcccaggaaacctagaa
ccatgatgatagacccaactgcaatcaagatattcacagcaatgaagggg
ttcgtgctagagtctcctgacgtgatgatctagaaaaaagaaaagaaaat
aactgatgtatagattcttcccttgatgtttatttactcaatttcgaaat
accccttgagtccccactgggtgtcagccctggtctgaaaactgaaaacc
ttttgtgactaacaagtaaaaaaaacagaaaaaaaatggtctctgccggg
cgcaattcaattaatggaagttgacctctgatctgtttccagccttgaat
tgt
gaattccatctgtaccattcactggggacggtgccattgatgacaatacc
aaatgtgctataattatttactcacccagttgataagaacaagtgacaca
gaaagaacaatttcttacggagaactgaatcaataattttatttctcaga
gtggcttgtgtggagaaaaatggtcctcactctgtataattatggttaat
ttgaagttaattatttttttctcccagatagacaagagattcacaaagaa
acttgcattaaaggatgttctaatcagacaagtactagaagtaaataaca
caataatattcataattcttttaaaactacgtgttttaacttttagcctt
cattgcagtccatgagaacattgtgaacaaatttcctgagttgacattgt
accattttttgcctgccgtggtgctgtgaaggaagggggctccagagaga
gagatgaaactcgagttgctgctccaatcttaggggaccaattacgtagc
ttcatttggcagctcttgctatggccacttaagtgtcaaggctttgatat
ccatttgtaaccataaccttgcatctcagaaacgactacttgcgttggca
gccatcctaacctaattaggaactaacgcagactcgtgcgtttcttgtaa
acacatcagcccgaggtaagggctaacacatgctctgagcctgcctgcgg
gtttatcggtttcccccttcctgcgatgttcgtccgggcctggattatat
tcagcagaactgcttttcctttgatttcccagttttgacattttaaattg
atgactttcttgctctttccgctctctggcaagagtttcccctttttcct
ttattttcgcccttactgtatttcgtttgttttacactttgtcatttaaa
catttatagaaagacagccggacacccaccgggacagaaaggaacaggct
tatggtgactctagagatacattatttattccatgagttatagattagaa
tttgattctctaaaacaacttcatttagaggagatctctcatctttctgc
tgatctagtgaacatctctcagatgatacatagagcaagcattggtcttc
tcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_115269991_115271219
seq2: B6Ng01-119B22.b_45_1247 (reverse)

seq1  ACAATTCAAGGCTGGAAACAGGACTCAGGAGGTGCCAACATTTCAATAAA  50
      |||||||||||||||||||||   ||| |||||  ||||  ||| || ||
seq2  ACAATTCAAGGCTGGAAACAG--ATCA-GAGGT--CAAC--TTCCATTAA  43

seq1  ATGTGAGCTGCGCCGGGGCAGAGACTATTTTTTTTTTTTTTTTTTTTTTT  100
         |||  ||||||  ||||||||| |          |||||||| | ||
seq2  --TTGAATTGCGCC-CGGCAGAGACCA----------TTTTTTTTCTGTT  80

seq1  TTTTTTACTGGTTTAGGTCACAAAAGTTTCTCAGGGTCTCAGACCAGGGC  150
      ||||||||| |||   |||||||||| || ||| | | ||||||||||| 
seq2  TTTTTTACTTGTT--AGTCACAAAAGGTTTTCA-GTTTTCAGACCAGGG-  126

seq1  CTGACACCCAGTGGGGACTCAAGGGGTATTTGGAAAATGAGTAAAATAAA  200
      ||||||||||||||||||||||||||||||| |||| ||||| |||||||
seq2  CTGACACCCAGTGGGGACTCAAGGGGTATTTCGAAATTGAGT-AAATAAA  175

seq1  CATCAAGGGAAGGAATCTATACATCAGTTATTTTCTTTTCTTTTTTCTAG  250
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGGGAA-GAATCTATACATCAGTTATTTTCTTTTCTTTTTTCTAG  224

seq1  ATCATCACGTCAGGAGACTCTAGCACGAACCCCTTCATTGCTGTGAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCACGTCAGGAGACTCTAGCACGAACCCCTTCATTGCTGTGAATAT  274

seq1  CTTGATTGCAGTTGGGTCTATCATCATGGTTCTAGGTTTCCTGGGATGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTGCAGTTGGGTCTATCATCATGGTTCTAGGTTTCCTGGGATGCT  324

seq1  GTGGAGCTGTGAAAGAAAGCCGGTGCATGCTTCTCTTGGTAGGCAACCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGCTGTGAAAGAAAGCCGGTGCATGCTTCTCTTGGTAGGCAACCCC  374

seq1  ACCCTTCAGACCCCCAAGGGTTATCTGTGATGTCACAAGACTTGTCCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTCAGACCCCCAAGGGTTATCTGTGATGTCACAAGACTTGTCCTTG  424

seq1  CCAAGCTTAATGAAACCCTGACTAACTTTAGAGAATTTGTTTATGGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTTAATGAAACCCTGACTAACTTTAGAGAATTTGTTTATGGAAGA  474

seq1  TACTATGGCATAGGTTTTGGACTACATCAGTATACATTAAAGTATCATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGGCATAGGTTTTGGACTACATCAGTATACATTAAAGTATCATTA  524

seq1  TGTCCTGCTTATATTAACTAATGTTGGAAGTTAATATGGCTGCCTTTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGCTTATATTAACTAATGTTGGAAGTTAATATGGCTGCCTTTTCC  574

seq1  CAAACAATCACACAGAAACCTGTTAATATTTCAAAGCCTTAGCTGGTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAATCACACAGAAACCTGTTAATATTTCAAAGCCTTAGCTGGTCAG  624

seq1  ACCCTGAACTAACTCATCGAAGTTAACCCAACCTACTAGCCTCATCCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGAACTAACTCATCGAAGTTAACCCAACCTACTAGCCTCATCCAGC  674

seq1  CACACGGGTAGCTATACTTTGCAAGCCTGTTACCAGAACATCTCTTCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGGGTAGCTATACTTTGCAAGCCTGTTACCAGAACATCTCTTCCCA  724

seq1  AGTCTCCGGACAAAAGGCCTCTCCTCCTTCTCCTTCCCAGAGTTCCTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCGGACAAAAGGCCTCTCCTCCTTCTCCTTCCCAGAGTTCCTTTT  774

seq1  TCCCTTCCAGCAAGTCCCGCCTTCCACTTCCTGCCTAGCTAATTGGCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCCAGCAAGTCCCGCCTTCCACTTCCTGCCTAGCTAATTGGCCAT  824

seq1  CAGATATTCATTAAAGCCAATCAGAGAATGCCTTAGGTAGGTGAGGAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATTCATTAAAGCCAATCAGAGAATGCCTTAGGTAGGTGAGGAAGG  874

seq1  ACAGAGAGACAGCTTCACACAGTGTATGCCAACCTATCGGCTTAAATCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGACAGCTTCACACAGTGTATGCCAACCTATCGGCTTAAATCTG  924

seq1  AGTTTGCTCTAAACTTCAGAGTCTAAAAGAAGACACATTTTAATGAGTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCTCTAAACTTCAGAGTCTAAAAGAAGACACATTTTAATGAGTCA  974

seq1  CGCCTTCACTCCTTCAGTCAGTCATGCAACGTGATCGTGTTTCTGTTTGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTCACTCCTTCAGTCAGTCATGCAACGTGATCGTGTTTCTGTTTGT  1024

seq1  CAGACACTGCGTTCAGTGATAGAGAAAACCCTAAGACAGACCCCATTGTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACTGCGTTCAGTGATAGAGAAAACCCTAAGACAGACCCCATTGTG  1074

seq1  GGAGGAATCAGTAAAACCATACTGTAGTGAGGGAAACTGAAGAGAAGGAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAATCAGTAAAACCATACTGTAGTGAGGGAAACTGAAGAGAAGGAT  1124

seq1  GAGGCTGGGGGAGGGAGCTTGCAAGCCAGAGGTGGAACTAATAATCTATC  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGGGGGAGGGAGCTTGCAAGCCAGAGGTGGAACTAATAATCTATC  1174

seq1  TGTGTGAGGGAGGGTGTGTTGTTGAATTC  1229
      |||||||||||||||||||||||||||||
seq2  TGTGTGAGGGAGGGTGTGTTGTTGAATTC  1203

seq1: chr10_115145321_115146446
seq2: B6Ng01-119B22.g_67_1170

seq1  GAATTCCATCTGTACCATTCACTGGGGACGGTGCCATTGATGACAATACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTGTACCATTCACTGGGGACGGTGCCATTGATGACAATACC  50

seq1  AAATGTGCTATAATTATTTACTCACCCAGTTGATAAGAACAAGTGACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGCTATAATTATTTACTCACCCAGTTGATAAGAACAAGTGACACA  100

seq1  GAAAGAACAATTTCTTACGGAGAACTGAATCAATAATTTTATTTCTCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAACAATTTCTTACGGAGAACTGAATCAATAATTTTATTTCTCAGA  150

seq1  GTGGCTTGTGTGGAGAAAAATGGTCCTCACTCTGTATAATTATGGTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTGTGTGGAGAAAAATGGTCCTCACTCTGTATAATTATGGTTAAT  200

seq1  TTGAAGTTAATTATTTTTTTCTCCCAGATAGACAAGAGATTCACAAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTTAATTATTTTTTTCTCCCAGATAGACAAGAGATTCACAAAGAA  250

seq1  ACTTGCATTAAAGGATGTTCTAATCAGACAAGTACTAGAAGTAAATAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCATTAAAGGATGTTCTAATCAGACAAGTACTAGAAGTAAATAACA  300

seq1  CAATAATATTCATAATTCTTTTAAAACTACGTGTTTTAACTTTTAGCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATATTCATAATTCTTTTAAAACTACGTGTTTTAACTTTTAGCCTT  350

seq1  CATTGCAGTCCATGAGAACATTGTGAACAAATTTCCTGAGTTGACATTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCAGTCCATGAGAACATTGTGAACAAATTTCCTGAGTTGACATTGT  400

seq1  ACCATTTTTTGCCTGCCGTGGTGCTGTGAAGGAAGGGGGCTCCAGAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTTTTGCCTGCCGTGGTGCTGTGAAGGAAGGGGGCTCCAGAGAGA  450

seq1  GAGATGAAACTCGAGTTGCTGCTCCAATCTTAGGGGACCAATTACGTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAAACTCGAGTTGCTGCTCCAATCTTAGGGGACCAATTACGTAGC  500

seq1  TTCATTTGGCAGCTCTTGCTATGGCCACTTAAGTGTCAAGGCTTTGATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTGGCAGCTCTTGCTATGGCCACTTAAGTGTCAAGGCTTTGATAT  550

seq1  CCATTTGTAACCATAACCTTGCATCTCAGAAACGACTACTTGCGTTGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGTAACCATAACCTTGCATCTCAGAAACGACTACTTGCGTTGGCA  600

seq1  GCCATCCTAACCTAATTAGGAACTAACGCAGACTCGTGCGTTTCTTGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCCTAACCTAATTAGGAACTAACGCAGACTCGTGCGTTTCTTGTAA  650

seq1  ACACATCAGCCCGAGGTAAGGGCTAACACATGCTCTGAGCCTGCCTGCGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCAGCCCGAGGTAAGGGCTAACACATGCTCTGAGCCTGCCTGCGG  700

seq1  GTTTATCGGTTTCCCCCTTCCTGCGATGTTCGTCCGGGCCTGGATTATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATCGGTTTCCCCCTTCCTGCGATGTTCGTCCGGGCCTGGATTATAT  750

seq1  TCAGCAGAACTGCTTTTCCTTTGATTTCCCAGTTTTGACATTTTAAATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGAACTGCTTTTCCTTTGATTTCCCAGTTTTGACATTTTAAATTG  800

seq1  ATGACTTTCTTGCTCTTTCCGCTCTCTGGCAAGAGTTTCCCCTTTTTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTTCTTGCTCTTTCCGCTCTCTGGCAAGAGTTTCCCCTTTTTCCT  850

seq1  TTATTTTCGCCCTTACTGTTATTTCGTTTGTTTTACAACTTTGTCATTTA  900
      |||||||||||||||||| ||||||||||||||||| |||||||||||||
seq2  TTATTTTCGCCCTTACTG-TATTTCGTTTGTTTTAC-ACTTTGTCATTTA  898

seq1  AACATTTATAGAAAGACAAGCCGGACACCCACCGGGACAGAAAGGAACAA  950
      ||||||||||||||||| |||||||||||||||||||||||||||||| |
seq2  AACATTTATAGAAAGAC-AGCCGGACACCCACCGGGACAGAAAGGAAC-A  946

seq1  GGCTTAATGGTGACTCTAGAGATAACAATTATTTATTCCATGAGTTATAG  1000
      ||||| ||||||||||||||||||   |||||||||||||||||||||||
seq2  GGCTT-ATGGTGACTCTAGAGATA--CATTATTTATTCCATGAGTTATAG  993

seq1  ATTAGAAATTTGATTCTTCTAAAAACAAACCTTCATTTTAGAGGAGGATT  1050
      ||||| |||||||||| ||| |||||||  ||||| ||||||||||   |
seq2  ATTAG-AATTTGATTC-TCT-AAAACAA--CTTCA-TTTAGAGGAG--AT  1035

seq1  CTCTCATCTTCTGGCTGGATCTAGTTGAAACCATCTCTCAGATGAATACA  1100
      ||||||||||   ||| ||||||| ||||  ||||||||||||| |||||
seq2  CTCTCATCTTTCTGCT-GATCTAG-TGAA--CATCTCTCAGATG-ATACA  1080

seq1  TAGAAGCAGGCATTGGTCTTCCTCTA  1126
      ||| |||| ||||||||||| |||||
seq2  TAG-AGCAAGCATTGGTCTT-CTCTA  1104