BAC Information

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BAC

Clone NameB6Ng01-119D21
Chromosome10 (Build37)1 (Build37)
Map Location 104,053,903 - 104,054,36384,037,433 - 84,038,451
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119D21.bB6Ng01-119D21.g
ACCDH923509DH923510
length1,0101,017
definitionDH923509|Mus musculus domesticus DNA, BAC clone: B6Ng01-119D21, 5' end.DH923510|Mus musculus domesticus DNA, BAC clone: B6Ng01-119D21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,903 - 104,054,363)(84,037,433 - 84,038,451)
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaatcctgaga
ttccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacag
cagatgctggcgaggatgtggagaaagaggaacactcctccatttttggt
gggattgcaggcttgtacaaccactctggaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacccctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgactgaggtaacacattcacaaa
ggaactcacacaatatgactgataagtggatgttagcccaaaacctagga
tacccaagatataagatacaatttcctaaacacatgaaactcaagaaaaa
tgaagactgaagtgtggacactatgcccctccttagaattgggaacaaaa
cacccatggaaggagttacagagacaaagtttggagctgagatgaaagga
tggaccatgtagagactgccatatccagggatccaccccataatcagctt
ccaaatgctgacaccattgcatacactagcaagattttattgaaaggacc
cagatgtagctctctcttgtgagactatgccagggcctagcaaacaccga
agtggatgctcacagtcagctattggatagattacagggccccaatggag
gagctagagaaagtacccaggactaaagggatctgcaccatatagtgcac
aacattatga
gaattccccttctaccagactacctttctctcacatataaacttgattat
ttctagtttcaaaaagtagaatgaatgaatatactttgtattttcccttt
aggtacccaaattagttgtttccttgtgtgtgtgtgtgtgtgtgtgtgtg
tttgtatgtacatacatagaatacatagaatacatacaacaggatgctcc
agcaccctcacctccactgagccacttaactcttacaggattctaaaaca
gacactcagaatcccccaagcaagagcagccaatcattgtgcctcaagct
tccatctcccaccaatctagtttttgtctctgtgattgtgactgttttaa
tgtgataaattacagtcttcatctactttgtgactgacttattatgttga
acattaacagtctcagattttatccatgtggtagcacatgcaagtgtttc
ctccccttggcactaaataatatttcactgtatatgcatattcacttgga
tgatgctgggcattgggttctttccatactttaactgttaggctcagtgg
gtcctttgatcttgaacatgtaaattatctcattaagatgcagcaatttg
ctcttttgagaaggacaaatgagtcatgtgaatcaaaatcagttttgact
tttttgatgaactactgtagtgtttgtataggttcaatgaacccacaatt
agaggccagtcctcaggttggtgccgggggacagaatagtactttggaag
aggtgggaattagtagagacatgagatgctttttagtgagtttccttata
gttcttgagagaacgctgtaaaagttcaagctaagctgtccctgccctct
tcttcttctgtctgctcctgctaaacatccaacctctctttctattggag
gtagatgtgcctataagttgcccttgctagaagttgaccaacactctcca
gtaccttggccacttttggactttaaattcccaaatttggggctaaaccg
aactccttataaatagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053903_104054363
seq2: B6Ng01-119D21.b_47_517 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          |||||||||||| |||||||||||||||||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || ||||||||||||||||||||||||||||||||||| | |||||||||
seq2  TCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGTTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCGGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      |||| |||||||||||||||||||||| || |||||||||||||||||||
seq2  TGGGACATCTTCTGGATATATGCCCAGGAGGGGTATTGCTGGATCCTCCG  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||||||||||||||||||||||| |||||||||||| || |||||||||
seq2  GTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGA-TTCCAGAGT  249

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGTTGTACAAGCCTGCAATCCCACCAAAAATGGAGGAGTGTTCCTCTTTC  299

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  349

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTCTGACTGGTGTGAGGTGGAATCTCAGGATTGTTTTGATTTGCATTTCC  399

seq1  CTGATGATTAAGGATGTTGAACA-TTTTTTCAGGTGCTTCTCTGCCATTC  439
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTGATGATTAAGGATGTTGAACATTTTTTTCAGGTGCTTCTCTGCCATTC  449

seq1  GGTATTCCTCAGGTGAGAATTC  461
      ||||||||||||||||||||||
seq2  GGTATTCCTCAGGTGAGAATTC  471

seq1: chr1_84037433_84038451
seq2: B6Ng01-119D21.g_67_1083 (reverse)

seq1  CATATTTATAAAGGAGGTCGGTTTAGCCCAAAATTTGGGAATTTAAAGTC  50
      | ||||||| |||||| |||||||||||| ||||||||||||||||||||
seq2  CCTATTTAT-AAGGAGTTCGGTTTAGCCCCAAATTTGGGAATTTAAAGTC  49

seq1  CAAAAGTGGGCCAAGGTACTGGGGAGTGTTGGTCAACTTCTAGCAAGGGC  100
      ||||||| |||||||||||||| |||||||||||||||||||||||||||
seq2  CAAAAGT-GGCCAAGGTACTGGAGAGTGTTGGTCAACTTCTAGCAAGGGC  98

seq1  AACTAATAGGCACATCTATCTTCAATAGAAAGAAGAGGTTGGATGCTTAG  150
      |||| ||||||||||||| || |||||||||| |||||||||||| ||||
seq2  AACTTATAGGCACATCTACCTCCAATAGAAAG-AGAGGTTGGATGTTTAG  147

seq1  CAGGAGCAGACAGAAGAAGAAGAGGGCAGGGACAGCTTAGCTTGAACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCAGACAGAAGAAGAAGAGGGCAGGGACAGCTTAGCTTGAACTTT  197

seq1  TACAGCGTTCTCTCAAGAACTATAAAGGAACTCACTAAAAAGCATCTCAT  250
      ||||||||||||||||||||||||| | ||||||||||||||||||||||
seq2  TACAGCGTTCTCTCAAGAACTATAAGGAAACTCACTAAAAAGCATCTCAT  247

seq1  GTCTCTACTAATTCCCACCTCTTCCAAAGTACTATTCTGTCCCCCGGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTACTAATTCCCACCTCTTCCAAAGTACTATTCTGTCCCCCGGCAC  297

seq1  CAACCTGAGGACTGGCCTCTAATTGTGGGTTCATTGAACCTATACAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGAGGACTGGCCTCTAATTGTGGGTTCATTGAACCTATACAAACA  347

seq1  CTACAGTAGTTCATC-AAAAAGTCAAAACTGATTTTGATTCACATGACTC  399
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTACAGTAGTTCATCAAAAAAGTCAAAACTGATTTTGATTCACATGACTC  397

seq1  ATTTGTCCTTCTCAAAAGAGCAAATTGCTGCATCTTAATGAGATAATTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCCTTCTCAAAAGAGCAAATTGCTGCATCTTAATGAGATAATTTA  447

seq1  CATGTTCAAGATCAAAGGACCCACTGAGCCTAACAGTTAAAGTATGGAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCAAGATCAAAGGACCCACTGAGCCTAACAGTTAAAGTATGGAAA  497

seq1  GAACCCAATGCCCAGCATCATCCAAGTGAATATGCATATACAGTGAAATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCAATGCCCAGCATCATCCAAGTGAATATGCATATACAGTGAAATA  547

seq1  TTATTTAGTGCCAAGGGGAGGAAACACTTGCATGTGCTACCACATGGATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAGTGCCAAGGGGAGGAAACACTTGCATGTGCTACCACATGGATA  597

seq1  AAATCTGAGACTGTTAATGTTCAACATAATAAGTCAGTCACAAAGTAGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGAGACTGTTAATGTTCAACATAATAAGTCAGTCACAAAGTAGAT  647

seq1  GAAGACTGTAATTTATCACATTAAAACAGTCACAATCACAGAGACAAAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTGTAATTTATCACATTAAAACAGTCACAATCACAGAGACAAAAA  697

seq1  CTAGATTGGTGGGAGATGGAAGCTTGAGGCACAATGATTGGCTGCTCTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATTGGTGGGAGATGGAAGCTTGAGGCACAATGATTGGCTGCTCTTG  747

seq1  CTTGGGGGATTCTGAGTGTCTGTTTTAGAATCCTGTAAGAGTTAAGTGGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGGATTCTGAGTGTCTGTTTTAGAATCCTGTAAGAGTTAAGTGGC  797

seq1  TCAGTGGAGGTGAGGGTGCTGGAGCATCCTGTTGTATGTATTCTATGTAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGAGGTGAGGGTGCTGGAGCATCCTGTTGTATGTATTCTATGTAT  847

seq1  TCTATGTATGTACATACAAACACACACACACACACACACACACACAAGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTATGTACATACAAACACACACACACACACACACACACACAAGGA  897

seq1  AACAACTAATTTGGGTACCTAAAGGGAAAATACAAAGTATATTCATTCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTAATTTGGGTACCTAAAGGGAAAATACAAAGTATATTCATTCAT  947

seq1  TCTACTTTTTGAAACTAGAAATAATCAAGTTTATATGTGAGAGAAAGGTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTTTTGAAACTAGAAATAATCAAGTTTATATGTGAGAGAAAGGTA  997

seq1  GTCTGGTAGAAGGGGAATTC  1019
      ||||||||||||||||||||
seq2  GTCTGGTAGAAGGGGAATTC  1017