BAC Information

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BAC

Clone NameB6Ng01-119J04
Chromosome10 (Build37)15 (Build37)
Map Location 104,053,903 - 104,054,34015,009,032 - 15,010,027
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119J04.bB6Ng01-119J04.g
ACCDH923750DH923751
length1,0251,126
definitionDH923750|Mus musculus domesticus DNA, BAC clone: B6Ng01-119J04, 5' end.DH923751|Mus musculus domesticus DNA, BAC clone: B6Ng01-119J04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,903 - 104,054,340)(15,009,032 - 15,010,027)
sequence
gaattcctaatggctctgaagctcctgagaaaatgttcaacatcgttaat
catcagggaaatgcaaatcaaaacaaccttgaaattccatgtcactccag
tcagaatggctaagatcaaaagttcaggtgacagcagatgctggaaagga
tgtagagaaagaggaacactcctcccttgctggtgggattgcaagcttat
acaaccactctggaagtcagtctcgaggttcctcagaaaattggacataa
tattaccggaagatccatcaatacctctcctgggcatatacccagaagaa
tttccaactggtaataagaacacatgccccattatgttcatagcagcctt
atttataatagccagaagctggaaagaacccagatgtcccttaacagaag
aatggatacagaaaatgtggtacatttacacaatggagtactactcagct
attaaaaacagtgaatttatgaaattcttggacaaatgaatgtatctgga
ggatattatccttagtgagttaacccaatcacaaaagaagtcattaggta
tgcactcaatgataagtggatattagcccagaaacatagaacatccaaga
tacaatttgcaaaacacaacaaaatcaagaagaggggcgactaacgggtg
gatacttcattcctccttagaatagggaacaaaatacccacgaaaggagt
tacaaagtttggagctaagaggaaaggatggaatatccagagagtacccc
acctggggatccatcccataatcagtcaccaaacccagacactattgcat
atgccagcaaaattttgctggagggaccctggcttagctgtctcatatga
ggctatgccagtgcctggcaaatacagaagtggatgttcacagtcacgta
ttcgatggaacacagggccaccattggagaagctagagaaagcacccaag
gagctgaagggctctacaccctatagtgaaacaacaatatgagctaccag
taccccagtgctcatatctctagct
gaattcacttaggtcaacagcgaattttcggaactgggaactgatcaggt
ggttgtccgcagttttcaaaaaactgctttaggtgagaggaaaaagggtt
taaattaaataatcaggcagatgtctgcagatgggagatgcatcaggtgg
cagaaacagggttcagaataataaaaaattctttgatttgtctaaattta
ttagactcgtgtagccatttcattttttttattggtcttagagatgtaat
atgctctgcgtgtcttcatcacaagagtattagcttataagttattgggt
atggtcaaatagctgtaaccctggttactagaaaattagctttaaattgg
taactcaggtttggagtctttcaaacaggtggcataaggcaggccaagag
gctgggcctctaaggatacttctagttgggataatatttaatattcttat
aatattcttatcctagaaagcagaattaaagataagatttaaagcaatgt
ctctttaatgaagcattaaaatctgcactgtcatgaattcataggtataa
attggcagccaaatttcgcaacgtgatagtgacgttttaatgttgattct
aaggtgataaattgttttgaaattgggttttgccttcccaaggttgtagt
tgtagtctaatattgcaaaagaaacttaataattctgatatctgacctca
tggcaagaggaactaagctcagagcagcttctggggggtttgtgtgactt
tcttttgtcttgcaaacgtgcctgaggaagctctcgaaacctgcctttcc
ttgccttcagggaaaattccttttagctaaaagagcatctttgcagacct
acccagataataaagtttaaattctaagtttataaaagtcaatcagttgt
agaatttatcagacattgcgatttgacttcacgtaaagtatatggattta
gagtttgttttcctttgcatctgatatgtaagagttgcttctagtgactg
aaaattttgcctgtaggtatgctactagctttacattattaagaaaattc
tagcatctctgcttctacaagattagagtgatcttcagtttttgttctaa
tggagtatttatagctatgcctctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053903_104054340
seq2: B6Ng01-119J04.b_54_501 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          ||||||||||||||||||||||||||||||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || |||| |||||| |||| |||||||||||||||||||| |||||||||
seq2  TCCATTCTTCTGTTAAGGGACATCTGGGTTCTTTCCAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| ||| ||| |||||||| ||| ||||| ||
seq2  ATAAATAAGGCTGCTATGAACATAATGGGGCATGTGTTCTTATTACCAGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      |||    |||||||| ||||||||||| |||||||||| |||||| ||||
seq2  TGGAAATTCTTCTGGGTATATGCCCAGGAGAGGTATTGATGGATCTTCCG  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      ||| || ||||||||||||||||| ||||| | |||| || |||||||||
seq2  GTAATATTATGTCCAATTTTCTGAGGAACCTCGAGACTGACTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      ||||||| |||| ||||||||||||| ||| |||||||||||||||||||
seq2  GGTTGTATAAGCTTGCAATCCCACCAGCAAGGGAGGAGTGTTCCTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      || |||||||  |||||||||||||||||||||| |||||||||||||||
seq2  TCTACATCCTTTCCAGCATCTGCTGTCACCTGAACTTTTGATCTTAGCCA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      |||||||||| ||||  |||||| ||| ||||||||||||||||||||||
seq2  TTCTGACTGGAGTGACATGGAATTTCAAGGTTGTTTTGATTTGCATTTCC  400

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATT  438
      ||||||||||| ||||||||||||||| ||||| |||||   ||||||
seq2  CTGATGATTAACGATGTTGAACATTTTCTCAGGAGCTTCAGAGCCATT  448

seq1: chr15_15009032_15010027
seq2: B6Ng01-119J04.g_261_1191

seq1  ATTTATTAGACTTGTGTAGCTGCTTCATTTGGTTTTTTACTGGTCTTAGA  50
      |||||||||||| |||||||   ||||||   ||||||| ||||||||||
seq2  ATTTATTAGACTCGTGTAGCCATTTCATT---TTTTTTATTGGTCTTAGA  47

seq1  GGTATAATATGCTCTGTGTGTCTTCATCACAAGAGTATTAACTTATAAGT  100
      | | |||||||||||| ||||||||||||||||||||||| |||||||||
seq2  GATGTAATATGCTCTGCGTGTCTTCATCACAAGAGTATTAGCTTATAAGT  97

seq1  TATTGGGTATGATCAAAAAGGTGTAACACTGGTT------AAGTTAGCTT  144
      ||||||||||| ||||| || |||||| ||||||      || |||||||
seq2  TATTGGGTATGGTCAAATAGCTGTAACCCTGGTTACTAGAAAATTAGCTT  147

seq1  TAAATTGGTAACTCAGGTTTGGAGTCTTTCCAACATGTGGCATAAGGCAT  194
      |||||||||||||||||||||||||||||| |||| ||||||||||||| 
seq2  TAAATTGGTAACTCAGGTTTGGAGTCTTTCAAACAGGTGGCATAAGGCAG  197

seq1  GCCAAGAGGCTGGGCCTCTAAGGATACTTCTAGTTGAGATAATATTTAAT  244
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GCCAAGAGGCTGGGCCTCTAAGGATACTTCTAGTTGGGATAATATTTAAT  247

seq1  GT--------GATTCTTATCCTAGAAAGTAGAATTAAAGATAAGATTTAA  286
       |         ||||||||||||||||| |||||||||||||||||||||
seq2  ATTCTTATAATATTCTTATCCTAGAAAGCAGAATTAAAGATAAGATTTAA  297

seq1  AGCAATGTCTCTTTAATGAAGCATTAAGACTTGCACTGTCATGCATTCAT  336
      ||||||||||||||||||||||||||| |  |||||||||||| ||||||
seq2  AGCAATGTCTCTTTAATGAAGCATTAAAATCTGCACTGTCATGAATTCAT  347

seq1  AGGTATAAATTGGCAGCCAAATTTCACAATGTGATAGTGAAGTTTTGATA  386
      ||||||||||||||||||||||||| ||| |||||||||| ||||| || 
seq2  AGGTATAAATTGGCAGCCAAATTTCGCAACGTGATAGTGACGTTTTAATG  397

seq1  TTTATTCTAAGGTGATAAATTGTTTTGAAATTGGGTTTTGCTTTCCCAAG  436
      || |||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTGATTCTAAGGTGATAAATTGTTTTGAAATTGGGTTTTGCCTTCCCAAG  447

seq1  GTTGTAGTTATAGTCTAATATTGCAAAAGAAACTTAAAAATTCTGAAATC  486
      ||||||||| ||||||||||||||||||||||||||| |||||||| |||
seq2  GTTGTAGTTGTAGTCTAATATTGCAAAAGAAACTTAATAATTCTGATATC  497

seq1  TGTCCTCATGGCAAGAGGAACTAAGCTCAGAGCAGCCTTTGTAGGGTTTG  536
      || ||||||||||||||||||||||||||||||||| | ||  |||||||
seq2  TGACCTCATGGCAAGAGGAACTAAGCTCAGAGCAGCTTCTGGGGGGTTTG  547

seq1  TGTGACTTTTTTTTTTTTTTTGTCTTGCAAACACTGCCTAAGAGAGCTCT  586
      ||||||       ||| |||||||||||||||  ||||| ||  ||||||
seq2  TGTGAC-------TTTCTTTTGTCTTGCAAAC-GTGCCTGAGGAAGCTCT  589

seq1  TGAAACTTGCCTCTCCTTGCCTTCAGGGAAAATTCCTTTTAGCTAAAAGA  636
       ||||| ||||| |||||||||||||||||||||||||||||||||||||
seq2  CGAAACCTGCCTTTCCTTGCCTTCAGGGAAAATTCCTTTTAGCTAAAAGA  639

seq1  GCACTGTTGCAGACCTATACAGATGTTGTTCTAAATAAAGTTCTAATTCA  686
      |||   |||||||||||  |||||         |||||||||  ||||| 
seq2  GCATCTTTGCAGACCTACCCAGAT---------AATAAAGTTTAAATTCT  680

seq1  AAGTTTATAAAAGGTCAATCAGGCTGTAGAATTTATCAGGACATTGCGAT  736
      |||||||||||| |||||||| | |||||||||||||| |||||||||||
seq2  AAGTTTATAAAA-GTCAATCA-GTTGTAGAATTTATCA-GACATTGCGAT  727

seq1  TTGACTTGCCTGCTTCATGTAAAGTTATTATAGATTTAAGAGTTTGTTTT  786
      ||||        ||||| |||||||   ||| ||||| ||||||||  ||
seq2  TTGA--------CTTCACGTAAAGT--ATATGGATTT-AGAGTTTG--TT  764

seq1  TTCCTTTGCATCCAGAAAATTGTAAAGAGTTTCCTTCTAGTGAGCTTGTA  836
      ||||||||||| | || |  ||| ||||| || |||||||||        
seq2  TTCCTTTGCAT-CTGATA--TGT-AAGAG-TTGCTTCTAGTG--------  801

seq1  ATCACTGAAAAAGTTTGCCACTAGGTACTGCTAATATAGCCTTACCTCAT  886
         |||| |||| ||||||  |||||| |||||   |||| |||| | ||
seq2  ---ACTG-AAAATTTTGCCTGTAGGTA-TGCTA--CTAGCTTTACATTAT  844

seq1  GTAAGAAAAATTCTTAGTGTCTCTGCTTCAATACAAGAAGCTAAGAGTTT  936
       |||| ||||||| |||  ||||||||||  |||||||   | |||||  
seq2  -TAAG-AAAATTC-TAGCATCTCTGCTTC--TACAAGA---TTAGAGT--  884

seq1  GAATCTTTCAGTGTATATTGTTTCCTAAGTGGAAAGTATTTTATTAGCTG  986
        ||| ||||||   | |||||  |||| |||  |||||||   ||||| 
seq2  -GATC-TTCAGT---TTTTGTT--CTAA-TGG--AGTATTT--ATAGCT-  921

seq1  ATGCCTCTCA  996
      ||||||||||
seq2  ATGCCTCTCA  931