BAC Information

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BAC

Clone NameB6Ng01-120F05
Chromosome10 (Build37)
Map Location 60,064,642 - 60,191,154
singlet/doubletdoublet
Overlap geneCdh23, Slc29a3
Upstream geneLOC100039225, Cbara1, EG664907, LOC664936, Dnajb12, Ddit4, D10Ertd641e, Ascc1, Spock2, Chst3, LOC100039080, Psap, 4632428N05Rik
Downstream geneUnc5b, Pcbd1, Sgpl1, 1700021K02Rik, Adamts14, Prf1, EG237361, X99384, Nodal, Eif4ebp2, D830039M14Rik, Lrrc20, Npffr1, Ppa1, Sar1a, Tysnd1, Aifm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120F05.bB6Ng01-120F05.g
ACCDH924297DH924298
length1,156823
definitionDH924297|Mus musculus domesticus DNA, BAC clone: B6Ng01-120F05, 5' end.DH924298|Mus musculus domesticus DNA, BAC clone: B6Ng01-120F05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,064,642 - 60,065,800)(60,190,332 - 60,191,154)
sequence
gaattccaaccttccttgcctcatatccctgcccctttcccagggttcct
gggctctccccttagtcaaccacctggctatgatgctgtggacaatcacc
caggctcctttcataccatcattagagccccccagcacctgtcaatcact
ggacgtcctaccacgaacaagaacgccagcctcaatcaatccatcacaag
gtctgtttctgagaaaaaccccaaaggcgtgcatctgagccatggtgaat
gcttgctactgcgggacgctgctggtccagctggctggtggggtgctaag
gacacaaactcctagacagtgtcccctcctctctcttcaggagacggatg
tgcagccatgtatagaagccccagagtggtttattgcagacccatattca
aatatttaacaatgggcgcagcacaggaatctaccaatccgagcggacgc
tggctataaacaaccgagctctgagtgcttgcacgtaagtcagcctggtt
tatggctcccgctttagatgcagagagggactgctccaagtctggcatga
tttaatggctcagactcaggcctcttggctcaatcagtacagccagtggc
gtctctgcatttggcctccctcccttgctgggaagggtcaccctactgag
ccagccagctccactctgtgccgagccaggctggggccctgtctaacctt
ggggcagaaggacattaaaaactgaggtacttagtccacggaaaacccac
agccataacagtttccacaatggtggaatagctcaaggagccacggatag
atggataagcaaaacacagcctgggcagcccatggatcatcgagttctgg
gaaagaaggggatgcagacgattgctttgctccagcatggatgaaccttt
gagatgctgcgctaagtgaaataagctagccatacagtgacagatgaaca
acacacaatcccacttctcccagtactcgtgaatggaatgccgatgttca
gaggctgggaaggatggagacggggactttatcttttgcgttgttttaca
agcacagagttcatgaactcagccaaggcacgttctggaaacgccacagt
ctactgaccgcaatctccacactgagtaatgggataaattccagaagtgc
atactc
gaattcctgtcgtctttaggtgatccatactgccacctgtcagggggtaa
catatacctactaccccttcactgcaccaccctgtatgtacggcgactta
ggaggttggaatgacatcctatttttcctggtcatagatgtgccatagtg
gagccacattcctgatcttttcccttggtggccatggaaccagaagctgg
cccagttctggggtcatccggttcagggaaaagaccctcttgggaccttg
gagtgtatgacctccagtcacagcagacagtggccaatcagtggccttgc
ataaaggaaaacagctcactcactcaggtgcctatgcaggtcacttggct
actgaagccaaagggcacgatttattcctagagggatctcctcagactgt
ctgcactcgaaacctgggctacctctgggtgcttagctaccgactttgta
gccccctgggccaggctccaggctgctaggcatggggagggtggttagaa
gggggctgggcagggaagtagtttcacaggtttcctagtagactatgggc
tgtaggcaatattttgagggccttagggaaacggttctccagcctcgctg
gttgccagctgccaaggacagtttagggcgaagctgttttttattttaat
gtggaagattgaaaaagtctccttccttccctccctcctggagcaccctg
gcttctctcactggctcatcataatcgctagtgttttattatgttaaatc
tgcagctttataaatacagatgagccagatttactttccagagtcttggg
aaaaaatcagtccctgtggtcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_60064642_60065800
seq2: B6Ng01-120F05.b_47_1202

seq1  GAATTCCAACCTTCCTTGCCTCATATCCCTGCCCCTTTCCCAGGGTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACCTTCCTTGCCTCATATCCCTGCCCCTTTCCCAGGGTTCCT  50

seq1  GGGCTCTCCCCTTAGTCAACCACCTGGCTATGATGCTGTGGACAATCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTCCCCTTAGTCAACCACCTGGCTATGATGCTGTGGACAATCACC  100

seq1  CAGGCTCCTTTCATACCATCATTAGAGCCCCCCAGCACCTGTCAATCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCCTTTCATACCATCATTAGAGCCCCCCAGCACCTGTCAATCACT  150

seq1  GGACGTCCTACCACGAACAAGAACGCCAGCCTCAATCAATCCATCACAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGTCCTACCACGAACAAGAACGCCAGCCTCAATCAATCCATCACAAG  200

seq1  GTCTGTTTCTGAGAAAAACCCCAAAGGCGTGCATCTGAGCCATGGTGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTTCTGAGAAAAACCCCAAAGGCGTGCATCTGAGCCATGGTGAAT  250

seq1  GCTTGCTACTGCGGGACGCTGCTGGTCCAGCTGGCTGGTGGGGTGCTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTACTGCGGGACGCTGCTGGTCCAGCTGGCTGGTGGGGTGCTAAG  300

seq1  GACACAAACTCCTAGACAGTGTCCCCTCCTCTCTCTTCAGGAGACGGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAAACTCCTAGACAGTGTCCCCTCCTCTCTCTTCAGGAGACGGATG  350

seq1  TGCAGCCATGTATAGAAGCCCCAGAGTGGTTTATTGCAGACCCATATTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCATGTATAGAAGCCCCAGAGTGGTTTATTGCAGACCCATATTCA  400

seq1  AATATTTAACAATGGGCGCAGCACAGGAATCTACCAATCCGAGCGGACGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTAACAATGGGCGCAGCACAGGAATCTACCAATCCGAGCGGACGC  450

seq1  TGGCTATAAACAACCGAGCTCTGAGTGCTTGCACGTAAGTCAGCCTGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATAAACAACCGAGCTCTGAGTGCTTGCACGTAAGTCAGCCTGGTT  500

seq1  TATGGCTCCCGCTTTAGATGCAGAGAGGGACTGCTCCAAGTCTGGCATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTCCCGCTTTAGATGCAGAGAGGGACTGCTCCAAGTCTGGCATGA  550

seq1  TTTAATGGCTCAGACTCAGGCCTCTTGGCTCAATCAGTACAGCCAGTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGGCTCAGACTCAGGCCTCTTGGCTCAATCAGTACAGCCAGTGGC  600

seq1  GTCTCTGCATTTGGCCTCCCTCCCTTGCTGGGAAGGGTCACCCTACTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGCATTTGGCCTCCCTCCCTTGCTGGGAAGGGTCACCCTACTGAG  650

seq1  CCAGCCAGCTCCACTCTGTGCCGAGCCAGGCTGGGGCCCTGTCTAACCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAGCTCCACTCTGTGCCGAGCCAGGCTGGGGCCCTGTCTAACCTT  700

seq1  GGGGCAGAAGGACATTAAAAACTGAGGTACTTAGTCCACGGAAAACCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGAAGGACATTAAAAACTGAGGTACTTAGTCCACGGAAAACCCAC  750

seq1  AGCCATAACAGTTTCCACAATGGTGGAATAGCTCAAGGAGCCACGGATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATAACAGTTTCCACAATGGTGGAATAGCTCAAGGAGCCACGGATAG  800

seq1  ATGGATAAGCAAAACACAGCCTGGGCAGCCAATGGATCATCGAGTTCTGG  850
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATGGATAAGCAAAACACAGCCTGGGCAGCCCATGGATCATCGAGTTCTGG  850

seq1  GAAAGAAGGGGATGCAGACGATTGC-TTGCTCCAGCATGGATGAACC-TT  898
      ||||||||||||||||||||||||| ||||||||||||||||||||| ||
seq2  GAAAGAAGGGGATGCAGACGATTGCTTTGCTCCAGCATGGATGAACCTTT  900

seq1  GAGATGCTGCGCTAAGTGAAATAAGCTAGCCATACAGTGACAGATGAACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCTGCGCTAAGTGAAATAAGCTAGCCATACAGTGACAGATGAACA  950

seq1  ACACACAATCCCACTTCTCCCCAGTACCTCGTGAAATGGAATGCCGATGT  998
      |||||||||||||||||| ||||||| |||||| ||||||||||||||||
seq2  ACACACAATCCCACTTCT-CCCAGTA-CTCGTG-AATGGAATGCCGATGT  997

seq1  TCAGAGGCTGGGAAGGATGGAGTAGGGGGACTTTATCTTTTGCG-TGTTT  1047
      |||||||||||||||||||||| | ||||||||||||||||||| |||||
seq2  TCAGAGGCTGGGAAGGATGGAG-ACGGGGACTTTATCTTTTGCGTTGTTT  1046

seq1  TACAGGCACAGAG-TCATGAACCTCAAGCCAAGGCACGTTCTGGAGACGG  1096
      |||| |||||||| ||||||| ||| ||||||||||||||||||| ||| 
seq2  TACAAGCACAGAGTTCATGAA-CTC-AGCCAAGGCACGTTCTGGAAACGC  1094

seq1  CACAGTCTACTGAACCGCAGTCT-CACACTGAGTAATGGGATAAATTCCA  1145
      |||||||||||| |||||| ||| ||||||||||||||||||||||||| 
seq2  CACAGTCTACTG-ACCGCAATCTCCACACTGAGTAATGGGATAAATTCC-  1142

seq1  AGATGTGCATACTC  1159
      ||| ||||||||||
seq2  AGAAGTGCATACTC  1156

seq1: chr10_60190332_60191154
seq2: B6Ng01-120F05.g_66_888 (reverse)

seq1  AGGACCCCAGGGGACTGATTTCTTCCCAAGACTCTGGAATGTAAATCTGG  50
      |||||| || ||||||||||| ||||||||||||||||| ||||||||||
seq2  AGGACCACA-GGGACTGATTTTTTCCCAAGACTCTGGAAAGTAAATCTGG  49

seq1  CTCATCTGTATTTATAAAGCTGCAGATTTAACATAATAAAACACTTGGCG  100
      |||||||||||||||||||||||||||||||||||||||||||| | |||
seq2  CTCATCTGTATTTATAAAGCTGCAGATTTAACATAATAAAACAC-TAGCG  98

seq1  ATTATGAATGAGCCAGTGAGAGAAGCCAGGGTGCTCCAGGAGGGAGGGAA  150
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATG-ATGAGCCAGTGAGAGAAGCCAGGGTGCTCCAGGAGGGAGGGAA  147

seq1  GGAAGGAGAC-TTTTCAATCTTCCACATT-AAATAAAAAACAGCTTCGCC  198
      |||||||||| |||||||||||||||||| ||||||||||||||||||||
seq2  GGAAGGAGACTTTTTCAATCTTCCACATTAAAATAAAAAACAGCTTCGCC  197

seq1  CTAAACTGTCCTTGGCAGCTGGCAACCAGCGAGGCTGGAGAACCGTTTCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTGTCCTTGGCAGCTGGCAACCAGCGAGGCTGGAGAACCGTTTCC  247

seq1  CTAAGGCCCTC-AAATATTGCCTACAGCCCATAGTCTACTAGGAAACCTG  297
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGCCCTCAAAATATTGCCTACAGCCCATAGTCTACTAGGAAACCTG  297

seq1  TGAAACTACTTCCCTGCCCAGCCCCCTTCTAACCACCCTCCCCATGCCTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTACTTCCCTGCCCAGCCCCCTTCTAACCACCCTCCCCATGCCTA  347

seq1  GCAGCCTGGAGCCTGGCCCAGGGGGCTACAAAGTCGGTAGCTAAGCACCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTGGAGCCTGGCCCAGGGGGCTACAAAGTCGGTAGCTAAGCACCC  397

seq1  AGAGGTAGCCCAGGTTTCGAGTGCAGACAGTCTGAGGAGATCCCTCTAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTAGCCCAGGTTTCGAGTGCAGACAGTCTGAGGAGATCCCTCTAGG  447

seq1  AATAAATCGTGCCCTTTGGCTTCAGTAGCCAAGTGACCTGCATAGGCACC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATCGTGCCCTTTGGCTTCAGTAGCCAAGTGACCTGCATAGGCACC  497

seq1  TGAGTGAGTGAGCTGTTTTCCTTTATGCAAGGCCACTGATTGGCCACTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAGTGAGCTGTTTTCCTTTATGCAAGGCCACTGATTGGCCACTGT  547

seq1  CTGCTGTGACTGGAGGTCATACACTCCAAGGTCCCAAGAGGGTCTTTTCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTGACTGGAGGTCATACACTCCAAGGTCCCAAGAGGGTCTTTTCC  597

seq1  CTGAACCGGATGACCCCAGAACTGGGCCAGCTTCTGGTTCCATGGCCACC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACCGGATGACCCCAGAACTGGGCCAGCTTCTGGTTCCATGGCCACC  647

seq1  AAGGGAAAAGATCAGGAATGTGGCTCCACTATGGCACATCTATGACCAGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAAAGATCAGGAATGTGGCTCCACTATGGCACATCTATGACCAGG  697

seq1  AAAAATAGGATGTCATTCCAACCTCCTAAGTCGCCGTACATACAGGGTGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAGGATGTCATTCCAACCTCCTAAGTCGCCGTACATACAGGGTGG  747

seq1  TGCAGTGAAGGGGTAGTAGGTATATGTTACCCCCTGACAGGTGGCAGTAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGAAGGGGTAGTAGGTATATGTTACCCCCTGACAGGTGGCAGTAT  797

seq1  GGATCACCTAAAGACGACAGGAATTC  823
      ||||||||||||||||||||||||||
seq2  GGATCACCTAAAGACGACAGGAATTC  823