BAC Information

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BAC

Clone NameB6Ng01-120I13
Chromosome10 (Build37)
Map Location 4,415,992 - 4,528,459
singlet/doubletdoublet
Overlap geneRgs17, Mtrf1l
Upstream geneOprm1, A130090K04Rik, LOC237252, LOC100041224
Downstream geneFbxo5, LOC666395, Vip, Myct1, Syne1, Esr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120I13.bB6Ng01-120I13.g
ACCDH924453DH924454
length1,107981
definitionDH924453|Mus musculus domesticus DNA, BAC clone: B6Ng01-120I13, 5' end.DH924454|Mus musculus domesticus DNA, BAC clone: B6Ng01-120I13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,527,344 - 4,528,459)(4,415,992 - 4,416,988)
sequence
gaattcacatgagcaatagctaaagaccacctatttgatttctttttgat
acaggttgtcctgaagcccagcctagtactgaatgtagtacaactctctt
gctttagcctcttgggtgctgggattaaaatgtgaggccagagtatccta
aaactactttttaaagctagaagtgcttatcatggagcagctttccacca
tactttacaggggatttcaaaattgtcattatatttaaaatcattaggta
aataatgagcatatcactacttagtccttacaaacaagttctgatcatca
gcttgcgagccctttccccaagacacactgcatgtaaatctatgccttac
gaaaacgaatctattcatctcctgactgtgctggttagaatattctaata
ttcaactgaaaaatgactacacaatactaatctgcagggaagtctgggag
acatttcttgattgatggattggccactggattggggtagagggtgatgc
tacccctgggcaaatggcctttgggtacacaagacagcaggctaagccag
aaggaggaatccagcaagcagctcttctgcaggacctatgtttcagttcc
tgccctgacttctcttcaaggtactgcaaactggaagataaaataaatcc
tgtcctccccaagttgcctttggtcatggtgtttgatcacagcaatagaa
acctaactaagacactgacctagttcactggggaaatattccagtgtttc
aaaatgccatcttttaaatgcagcgtactgctggtacatgtcaaacatct
cagaagtgaaaagcatggcttcctgaccacccacacccgcagtcacctcc
aggatcaagtcactcccatccatttcttccgaaggaaccaacagtgagat
atctgcaaacaaagacacaccttcctgtaattaaccactcccagaccatg
ctcaagctatggatcagggaacttagctattggaacctaagtttctctaa
acaaatgatctaatactgctcttgatatactttgaccatattgctaggta
aaatgtatagtgcatacttccagtaaggatatatgctccacgtattataa
atgcatt

gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagtacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagattacgcttttttgtaagttatgactcta
taataaaagagcagagtacagatcagtttcaggatttcttgtggtctcag
gcatccacagtgagacttgcagtatgtctctggtgaccaaaggtgggtcc
tggatttgtcttaagctattctcggaatcatgaaaatgcaaagaaatcca
ccccgggactgtaatgagaggactgaagaataaagaccaagagatggtca
caaaagaacaagagtggacaagaggaaaggaaaacacaaagtagcctaac
agctactcaagagcaaaacttgatcctgaaacacaagaaataccttcaat
ttcatggctaaatacaatggtaatatatatattcccattttgggcacagc
agtgaggatagcatattgctcttgcagaggacctgagctcagtttgcagc
agccaagtggggtgactttcaaacaccaatatttccagctctagggtgtc
tgatgccctctctggcctcctgaggtaccacacacacacacacacacaca
cacacacacacacacttcaaataacccttttaaatgtgtaaatgcattat
atgatcaggggtattacaagatgatttgtccttcatgctcttataatctt
aatcaaaaaatttattgcaggggatagacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_4527344_4528459
seq2: B6Ng01-120I13.b_47_1153 (reverse)

seq1  AATGCATTTTATAATAC-TGGAGCATTAATACCTTACTGGAAATTATGCA  49
      |||||| |||||||||| ||||||||  || ||||||||| || ||||||
seq2  AATGCA-TTTATAATACGTGGAGCATATAT-CCTTACTGG-AAGTATGCA  47

seq1  CTATACATTTTTACTTAGCAATATGGTCAAAGTATATCAAAGAGCAGTAT  99
      ||||||| |||||| ||||||||||||||||||||||| |||||||||||
seq2  CTATACA-TTTTACCTAGCAATATGGTCAAAGTATATC-AAGAGCAGTAT  95

seq1  TAGATCATTTGTTTAGAGAAACTTAGGTTCC-ATAGCTAAGTTCCCTGAT  148
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TAGATCATTTGTTTAGAGAAACTTAGGTTCCAATAGCTAAGTTCCCTGAT  145

seq1  CCATAGCTTTGAGCAATGGTCTTGGGAGTGGTTAATTACAGGAAGGTGTT  198
      ||||||| |||||| |||||| |||||||||||||||||||||||||| |
seq2  CCATAGC-TTGAGC-ATGGTC-TGGGAGTGGTTAATTACAGGAAGGTG-T  191

seq1  GTCTTTTGTTTGCAGATTATCTCACTGTTGGTTCCTTCGGAAGAAATGGA  248
      ||| |||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTC-TTTGTTTGCAGA-TATCTCACTGTTGGTTCCTTCGGAAGAAATGGA  239

seq1  TGGGAGTGACTTGATCCTGGAGGTGACTGCGGGTGTGGGTGGTCAGGAAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTGACTTGATCCTGGAGGTGACTGCGGGTGTGGGTGGTCAGGAAG  289

seq1  CCATGCTTTTCACTTCTGAGATGTTTGACATGTACCAGCAGTACGCTGCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTTTTCACTTCTGAGATGTTTGACATGTACCAGCAGTACGCTGCA  339

seq1  TTTAAAAGATGGCATTTTGAAACACTGGAATATTTCCCCAGTGAACTAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGATGGCATTTTGAAACACTGGAATATTTCCCCAGTGAACTAGG  389

seq1  TCAGTGTCTTAGTTAGGTTTCTATTGCTGTGATCAAACACCATGACCAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTCTTAGTTAGGTTTCTATTGCTGTGATCAAACACCATGACCAAA  439

seq1  GGCAACTTGGGGAGGACAGGATTTATTTTATCTTCCAGTTTGCAGTACCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACTTGGGGAGGACAGGATTTATTTTATCTTCCAGTTTGCAGTACCT  489

seq1  TGAAGAGAAGTCAGGGCAGGAACTGAAACATAGGTCCTGCAGAAGAGCTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGAAGTCAGGGCAGGAACTGAAACATAGGTCCTGCAGAAGAGCTG  539

seq1  CTTGCTGGATTCCTCCTTCTGGCTTAGCCTGCTGTCTTGTGTACCCAAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGGATTCCTCCTTCTGGCTTAGCCTGCTGTCTTGTGTACCCAAAG  589

seq1  GCCATTTGCCCAGGGGTAGCATCACCCTCTACCCCAATCCAGTGGCCAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTGCCCAGGGGTAGCATCACCCTCTACCCCAATCCAGTGGCCAAT  639

seq1  CCATCAATCAAGAAATGTCTCCCAGACTTCCCTGCAGATTAGTATTGTGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAATCAAGAAATGTCTCCCAGACTTCCCTGCAGATTAGTATTGTGT  689

seq1  AGTCATTTTTCAGTTGAATATTAGAATATTCTAACCAGCACAGTCAGGAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTTTTCAGTTGAATATTAGAATATTCTAACCAGCACAGTCAGGAG  739

seq1  ATGAATAGATTCGTTTTCGTAAGGCATAGATTTACATGCAGTGTGTCTTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAGATTCGTTTTCGTAAGGCATAGATTTACATGCAGTGTGTCTTG  789

seq1  GGGAAAGGGCTCGCAAGCTGATGATCAGAACTTGTTTGTAAGGACTAAGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGGGCTCGCAAGCTGATGATCAGAACTTGTTTGTAAGGACTAAGT  839

seq1  AGTGATATGCTCATTATTTACCTAATGATTTTAAATATAATGACAATTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATATGCTCATTATTTACCTAATGATTTTAAATATAATGACAATTTT  889

seq1  GAAATCCCCTGTAAAGTATGGTGGAAAGCTGCTCCATGATAAGCACTTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCCCTGTAAAGTATGGTGGAAAGCTGCTCCATGATAAGCACTTCT  939

seq1  AGCTTTAAAAAGTAGTTTTAGGATACTCTGGCCTCACATTTTAATCCCAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTAAAAAGTAGTTTTAGGATACTCTGGCCTCACATTTTAATCCCAG  989

seq1  CACCCAAGAGGCTAAAGCAAGAGAGTTGTACTACATTCAGTACTAGGCTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAAGAGGCTAAAGCAAGAGAGTTGTACTACATTCAGTACTAGGCTG  1039

seq1  GGCTTCAGGACAACCTGTATCAAAAAGAAATCAAAAAGGTGGTCTTTAGC  1098
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGCTTCAGGACAACCTGTATCAAAAAGAAATCAAATAGGTGGTCTTTAGC  1089

seq1  TATTGCTCATGTGAATTC  1116
      ||||||||||||||||||
seq2  TATTGCTCATGTGAATTC  1107


seq1: chr10_4415992_4416988
seq2: B6Ng01-120I13.g_69_1049

seq1  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50

seq1  TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC  100

seq1  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150

seq1  TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA  200

seq1  TTAGGTCCCATTTGTCAATTCTCGATCTTACAGTACAAGCCATTGCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTCCCATTTGTCAATTCTCGATCTTACAGTACAAGCCATTGCTGTT  250

seq1  CTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCAC  300

seq1  TTTCTCCTCTATAAGTTTCAGATTACGCTTTTTTGTAAGTTATGACTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTCTATAAGTTTCAGATTACGCTTTTTTGTAAGTTATGACTCTA  350

seq1  TAATAAAAGAGCAGAGTACAGATCAGTTTCAGGATTTCTTGTGGTCTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAAGAGCAGAGTACAGATCAGTTTCAGGATTTCTTGTGGTCTCAG  400

seq1  GCATCCACAGTGAGACTTGCAGTATGTCTCTGGTGACCAAAGGTGGGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCACAGTGAGACTTGCAGTATGTCTCTGGTGACCAAAGGTGGGTCC  450

seq1  TGGATTTGTCTTAAGCTATTCTCGGAATCATGAAAATGCAAAGAAATCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTGTCTTAAGCTATTCTCGGAATCATGAAAATGCAAAGAAATCCA  500

seq1  CCCCGGGACTGTAATGAGAGGACTGAAGAATAAAGACCAAGAGATGGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGGACTGTAATGAGAGGACTGAAGAATAAAGACCAAGAGATGGTCA  550

seq1  CAAAAGAACAAGAGTGGACAAGAGGAAAGGAAAACACAAAGTAGCCTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAACAAGAGTGGACAAGAGGAAAGGAAAACACAAAGTAGCCTAAC  600

seq1  AGCTACTCAAGAGCAAAACTTGATCCTGAAACACAAGAAATACCTTCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTCAAGAGCAAAACTTGATCCTGAAACACAAGAAATACCTTCAAT  650

seq1  TTCATGGCTAAATACAATGGTAATATATATATTCCCA-TTTGGGCACAGC  699
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTCATGGCTAAATACAATGGTAATATATATATTCCCATTTTGGGCACAGC  700

seq1  AGTGAGGATAGCATATTGCTCTTGCAGAGGACCTGAGCTCAGTTTGCAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGATAGCATATTGCTCTTGCAGAGGACCTGAGCTCAGTTTGCAGC  750

seq1  AGCCAAGTGGGGTGACTTTCAAACACCAATATTTCCAGCTCTAGGGTGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGTGGGGTGACTTTCAAACACCAATATTTCCAGCTCTAGGGTGTC  800

seq1  TGATGCCCTCTTCTGGCCTCCTGAGGTAACCACACACACACACACACACA  849
      |||||||||| |||||||||||||||| ||||||||||||||||||||||
seq2  TGATGCCCTC-TCTGGCCTCCTGAGGT-ACCACACACACACACACACACA  848

seq1  CACACACACACACACACTTCAAATAACACTTTTTAAATGTGTAAATGCAT  899
      ||||||||||||||||||||||||||| | ||||||||||||||||||||
seq2  CACACACACACACACACTTCAAATAAC-CCTTTTAAATGTGTAAATGCAT  897

seq1  TCATATGAATCAGGGGGTATTTACAAGATGATTTGTCCCTTCAATGCTCT  949
      | ||||| |||| |||||| |||||||||||||||| ||||| |||||||
seq2  T-ATATG-ATCA-GGGGTA-TTACAAGATGATTTGT-CCTTC-ATGCTCT  941

seq1  TATAAATCTTAAATCAAAAAAAAATTTTATTGACAGTGGAATAGACAC  997
      ||| |||||| ||||||||||    ||||||| ||| || ||||||||
seq2  TAT-AATCTT-AATCAAAAAA----TTTATTG-CAG-GGGATAGACAC  981


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