BAC Information

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BAC

Clone NameB6Ng01-120N14
Chromosome13 (Build37)10 (Build37)
Map Location 4,584,186 - 4,585,284104,054,160 - 104,054,469
singlet/doubletsingletsinglet
Overlap geneAkr1c21
Upstream geneAsb13, Calml3, Calm4, Calm5, LOC100039279, Net1, Tubal3, Ucn3, Akr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12, Akr1c6, Akr1c20
Downstream geneAkr1e1, EG432721, EG432723
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120N14.bB6Ng01-120N14.g
ACCDH924684DH924685
length1,099984
definitionDH924684|Mus musculus domesticus DNA, BAC clone: B6Ng01-120N14, 5' end.DH924685|Mus musculus domesticus DNA, BAC clone: B6Ng01-120N14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(4,584,186 - 4,585,284)(104,054,160 - 104,054,469)
sequence
gaattcaagataagatgtattatgaatgagggaaagcagtgggaaaatca
attcaaaacgaaaaatatgataatatataaaaattataaacataatgcaa
agtagcattatgcatattttcttctaattgaagatagatttgtttatcat
acaatatatcctgattaccatttcccctctctatactcttcccagttctt
cccaacctctcttcacctccagatccactccctttatgtctcacattaga
aaaaaataggtttctaagagacaacaaccaatcatctcaaattagattat
aataaggcaaagttaggtatctttatcttgctttccaaaatagaatatca
taagataaagatcaaacatcacactgaggtgggacaaggcaacccaatgg
aaagaaaagaacctcaagagcaggcacaagagtcagagaaccactcattc
acacattctgagctgaaatgagccaaattatttaatgatcattttatagt
tcttggacttaatgataaaataaaacatcataaagataaatgcagtttaa
aacgaaagaaattaaatatcagtaactatatattcccaaatatctttaat
ttgctatatttatttatttgtatataggtgtacatgtatttgtgtgggtg
catgtcatggagatcagatgactacttgccactgaagcttctctcctaat
atataggtcccaacactaaaactcaagtcatcaatttttaggtatagcct
tacccaactgagccatcttaccatttttcaattagtacttcatttcttgt
gtagaacaatgtttgctttctttgacgatttttaacataaaatattgact
atctcttagttaaaaattattttttaaaaatttattattttgaatatttt
taattgtatgggttttacctatatgtatttgtgcaccccatgcattccag
gtgccatatagggcagaagaagcatagtatatcattctctggaactgcag
ttacagatggtgtgagccaccatgtaggtattgtgaatagcactggatcc
ttcttgaagagcagtcagttcttttaagactgaaaaatatctcctccag
gaattccacttaacagtgctgggaatgaagaacagttgatagagtcactg
ccttgaatggatgaagtcctgggttcgattgcagcatcacagaaaccagc
catgttggtgcactcatgtagtcccagtcctctgaaacatacgtttaagg
tcgttctcctcatatagacactgagtttgaggctagaataagacatgaga
tttgcctcaaaacaaaagaaaaaacaaacaaatccagccagcaagataga
caacactgacaaaaacatttacatgacacaaaaagaccaccaacagattg
gaaaaggatctttatcctaaatcagataggggactaatatccaatatata
taaagaactcaagaaggtggactccagaaaatcaaataaccccattaaga
aaaagccgggcggtggtggcacacacctttaatcccagcacttgggaggc
agaggcatgcagatttctgagttcgaggccagcctggtctacaaagtgag
ttccaggacagccagggctacacagagaaaccctgtcttgaaaaaccaaa
aaaaaaaaaaaaaaaagccgggcgtggtggtgcacgcctttaaatcccag
cactcgggaggcagaggcaggcggatttttgagttcgaggccagcctggt
ctacagagtgagtgccaggacagccagggatacagagaaaccctgtctcg
aaaaaaaaacaaaacaaaacaaaaataaatacacaacaaaaaaaaaaaaa
gaaagaaaagaaagaaaaagggggtgggggctcagagctgaacaaagatt
ctcacctgaggaatactgaatggcagagaagcacctgaaaaatgtacaac
atccttatcatcaggaaatgcaaatcaaaacaccctgagatttgacctca
caccagtcagatggctaagatcaaaatcagtgacagcagatgctgcgaga
tgtgagaaagagacactcccccatgtggtgggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_4584186_4585284
seq2: B6Ng01-120N14.b_51_1149

seq1  GAATTCAAGATAAGATGTATTATGAATGAGGGAAAGCAGTGGGAAAATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGATAAGATGTATTATGAATGAGGGAAAGCAGTGGGAAAATCA  50

seq1  ATTCAAAACGAAAAATATGATAATATATAAAAATTATAAACATAATGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAACGAAAAATATGATAATATATAAAAATTATAAACATAATGCAA  100

seq1  AGTAGCATTATGCATATTTTCTTCTAATTGAAGATAGATTTGTTTATCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCATTATGCATATTTTCTTCTAATTGAAGATAGATTTGTTTATCAT  150

seq1  ACAATATATCCTGATTACCATTTCCCCTCTCTATACTCTTCCCAGTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATATCCTGATTACCATTTCCCCTCTCTATACTCTTCCCAGTTCTT  200

seq1  CCCAACCTCTCTTCACCTCCAGATCCACTCCCTTTATGTCTCACATTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACCTCTCTTCACCTCCAGATCCACTCCCTTTATGTCTCACATTAGA  250

seq1  AAAAAATAGGTTTCTAAGAGACAACAACCAATCATCTCAAATTAGATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAGGTTTCTAAGAGACAACAACCAATCATCTCAAATTAGATTAT  300

seq1  AATAAGGCAAAGTTAGGTATCTTTATCTTGCTTTCCAAAATAGAATATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGCAAAGTTAGGTATCTTTATCTTGCTTTCCAAAATAGAATATCA  350

seq1  TAAGATAAAGATCAAACATCACACTGAGGTGGGACAAGGCAACCCAATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATAAAGATCAAACATCACACTGAGGTGGGACAAGGCAACCCAATGG  400

seq1  AAAGAAAAGAACCTCAAGAGCAGGCACAAGAGTCAGAGAACCACTCATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAGAACCTCAAGAGCAGGCACAAGAGTCAGAGAACCACTCATTC  450

seq1  ACACATTCTGAGCTGAAATGAGCCAAATTATTTAATGATCATTTTATAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTCTGAGCTGAAATGAGCCAAATTATTTAATGATCATTTTATAGT  500

seq1  TCTTGGACTTAATGATAAAATAAAACATCATAAAGATAAATGCAGTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGACTTAATGATAAAATAAAACATCATAAAGATAAATGCAGTTTAA  550

seq1  AACGAAAGAAATTAAATATCAGTAACTATATATTCCCAAATATCTTTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAAAGAAATTAAATATCAGTAACTATATATTCCCAAATATCTTTAAT  600

seq1  TTGCTATATTTATTTATTTGTATATAGGTGTACATGTATTTGTGTGGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATATTTATTTATTTGTATATAGGTGTACATGTATTTGTGTGGGTG  650

seq1  CATGTCATGGAGATCAGATGACTACTTGCCACTGAAGCTTCTCTCCTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCATGGAGATCAGATGACTACTTGCCACTGAAGCTTCTCTCCTAAT  700

seq1  ATATAGGTCCCAACACTAAAACTCAAGTCATCAATTTTTAGGTATAGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGGTCCCAACACTAAAACTCAAGTCATCAATTTTTAGGTATAGCCT  750

seq1  TACCCAACTGAGCCATCTTACCATTTTTCAATTAGTACTTCATTTCTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAACTGAGCCATCTTACCATTTTTCAATTAGTACTTCATTTCTTGT  800

seq1  GTAGAACAATGTTTGCTTTCTTTGACGATTTTTAACATAAAATATTGACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAACAATGTTTGCTTTCTTTGACGATTTTTAACATAAAATATTGACT  850

seq1  ATCTCTTAGTTAAAAATTATTTTTAAAAAATTTATTATTTTGAATATTTT  900
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATCTCTTAGTTAAAAATTATTTTTTAAAAATTTATTATTTTGAATATTTT  900

seq1  TAATTGTATGGGTTTTACCTATATGTATTTGTGCACCCCATGCATTCCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTATGGGTTTTACCTATATGTATTTGTGCACCCCATGCATTCCAG  950

seq1  GTGCCATATAGGCCAGAAGAAGGCATAGTATATCATTCTCTGGAACTGCA  1000
      |||||||||||| |||||||| ||||||||||||||||||||||||||||
seq2  GTGCCATATAGGGCAGAAGAA-GCATAGTATATCATTCTCTGGAACTGCA  999

seq1  GTTACAGATGGTTGTGAGCCACCATGTAGGTATTGTGAATAGCAACTGGA  1050
      ||||||||||| ||||||||||||||||||||||||||||||| ||||||
seq2  GTTACAGATGG-TGTGAGCCACCATGTAGGTATTGTGAATAGC-ACTGGA  1047

seq1  TCC-TCTGGAAGAGCAGTCAGTTCTTTTAAAGACTG--AGATATCT-CTC  1096
      ||| ||| |||||||||||||||||||| |||||||  | |||||| |||
seq2  TCCTTCTTGAAGAGCAGTCAGTTCTTTT-AAGACTGAAAAATATCTCCTC  1096

seq1  CAG  1099
      |||
seq2  CAG  1099

seq1: chr10_104054160_104054469
seq2: B6Ng01-120N14.g_386_1052 (reverse)

seq1  ATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGC  50
      |||||||||   |||| |||||||  |||||||| ||||| |||| ||||
seq2  ATCCCACCA--CATGGGGGAGTGT--CTCTTTCT-CACAT-CTCG-CAGC  43

seq1  ATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGG  100
      ||||||||||| ||||  ||||||||||||||| ||||||||||||||||
seq2  ATCTGCTGTCA-CTGA--TTTTGATCTTAGCCA-TCTGACTGGTGTGAGG  89

seq1  TGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGT  150
      |  |||||||||| ||||||||||||||||| |||||||| |||||||||
seq2  TCAAATCTCAGGG-TGTTTTGATTTGCATTT-CCTGATGA-TAAGGATGT  136

seq1  TGAACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGA  200
      || ||| ||||||||||||||||||||||||| |||||||||||||||||
seq2  TGTACA-TTTTTCAGGTGCTTCTCTGCCATTCAGTATTCCTCAGGTGAGA  185

seq1  ATTCTTTGTTCAGTTCTGAGCCC-------------CATTTTTTAATAGG  237
      | ||||||||||| |||||||||             | || |||  |   
seq2  A-TCTTTGTTCAGCTCTGAGCCCCCACCCCCTTTTTCTTTCTTTTCTTTC  234

seq1  GTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTT--ATATATGTT  285
       || |||  |||| |   ||     || |||  || |||   | | | ||
seq2  TTTTTTTTTTTTTGTTGTGTATTTATTTTTGTTTTGTTTTGTTTTTTTTT  284

seq1  GGATA-----TTAGTC-----CCCTATCTGAATTA---------------  310
       || |     ||  ||     ||||  |||   |                
seq2  CGAGACAGGGTTTCTCTGTATCCCTGGCTGTCCTGGCACTCACTCTGTAG  334

seq1  --------------------------------------------------  310
                                                        
seq2  ACCAGGCTGGCCTCGAACTCAAAAATCCGCCTGCCTCTGCCTCCCGAGTG  384

seq1  --------------------------------------------------  310
                                                        
seq2  CTGGGATTTAAAGGCGTGCACCACCACGCCCGGCTTTTTTTTTTTTTTTT  434

seq1  --------------------------------------------------  310
                                                        
seq2  TTTGGTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAA  484

seq1  --------------------------------------------------  310
                                                        
seq2  CTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCATGCCTCT  534

seq1  --------------------------------------------------  310
                                                        
seq2  GCCTCCCAAGTGCTGGGATTAAAGGTGTGTGCCACCACCGCCCGGCTTTT  584

seq1  --------------------------------------------------  310
                                                        
seq2  TCTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTA  634

seq1  ---------------------------------  310
                                       
seq2  TATATATTGGATATTAGTCCCCTATCTGATTTA  667