BAC Information

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BAC

Clone NameB6Ng01-123G02
Chromosome10 (Build37)
Map Location 115,704,046 - 115,876,634
singlet/doubletdoublet
Overlap genePtprr, Ptprb, Kcnmb4
Upstream geneLOC668041, Rab21, Tmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071, EG668073, Tspan8, 4933416C03Rik
Downstream geneCnot2, LOC668080, EG668091, Gm239, Rab3ip, D630029K05Rik, LOC544741, Best3, Lrrc10, Cct2, Frs2, Yeats4, 9530003J23Rik, Lyzs, Lyz, Cpsf6, LOC668146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123G02.bB6Ng01-123G02.g
ACCDH926558DH926559
length1,1181,091
definitionDH926558|Mus musculus domesticus DNA, BAC clone: B6Ng01-123G02, 5' end.DH926559|Mus musculus domesticus DNA, BAC clone: B6Ng01-123G02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,704,046 - 115,705,155)(115,875,533 - 115,876,634)
sequence
gaattccctctgtctactgattagaccggatactggctgggcggtgcagc
aggaaaggctctgtgtgtgtgtgtgtgtgtgtggtcacaaaaggtcacaa
agctctcccctgggtatctctgaggcttggagagtttttgtcttgctttt
ttttccccccaaaatactgtctcacttgcaaagcgtgggcaagggagtcc
tacgttccccctcttttagcttgagtccacccccagctgacacagtaacg
tgcttccccagctgatttctgggtctgacagagccagtgagattcttgaa
ggcatgtctagagggatagcatatctgcatccttctgggctggttaattg
tcttcctattctatggccaccccacagcacctcgacaatgaatgtggcta
ctttgtttccagagcatatgacacagacaggataaacaaataatctagta
tctgtaccctggttttccaagcgggcatagccagaacctcaccagggctt
gggagtgaaccatggcagtcccaggtatagtgttaagtggatagtgattg
gaagaacaaagttaggcagcagttattttgtacttcagcaccagcagcca
ctgtgattagcatttgtgagttatctatttaatccctgcaaaccctgaag
ccttattaggtaacacattcatttgcccagccaatactttgcttttccag
agcatttgtgggtgtgagcagtggaaaatttctctcagacaaaaatcttc
caccggtcacggatgagaaaagccacccagcacgcagtcacattagtgac
aggttacaatactgacaggttctcttgatccctggctcctccttcctccc
tgataacactgggagctagggactccttggggtttctgtgactgtcctgc
agctagacaaccaggtactcagacacattttatgctcataatgagatgac
atctgtcattcatattacttcataagtgagaaaagccaggctgtggggga
ggagaataagtcaagagctttcctgtgatcttcagtaacttggggaggtt
gaaggcaggagtttgccagaagttcaagccaagctgggctattttacaag
aatcctgtcttcaatgac
gaattcaactccctccccacgcctctacctgcagaaagtcacgtggttag
attacaagtttctccggagtaggacctgtccagctagcactctcgattcc
tgaaatgcttccctgtgctaacgaggcatttccaataaaccctcagccaa
tgaccttggcccatcttggatgttccttccctcccctcctccccaaaatt
ctataagccttgaatcagcccaaataaagttgacctgcctccctgcagtt
ggtcctggtgtgtcttctttgtgtacagactcaacagagttttcctccct
gctccctttgcccttgagggcagggaggggcatggttccaggctttttca
gtaaaagccacccttaacaagcacgctgtaatgatagactggggattcta
cggcaagcacactgaagacgccttcatctttgccttccctggtgagcgag
cacctggagaggagtgagttttcttgcagggtttactcattccataggta
caccagaaaggatggaaggtcacagctcacgtcttagacctgtgctcgca
aaccctcgtcaaaggaaccagtttggccagagcatttgtgtcatctcttg
aatgctacctgcagggctgctgctgctttggttcagatgcctacatggcc
gaggtgaccctcgttggtctgatgagccttgttccttgtcttggctgtct
tctcttgactgggttgggtctcacttttaagactcctaccgttgaaagac
catattctgactcagagaggcgacaccccaaatcactcatgagaaacggc
cttgatgcaaactgcaagaggactttttttttccaagagcgctctggggc
ccacagtcatacaccacacaggggtagaggactgtggcaccctgagtagc
tgggtagggtatttaaaggagaaaccacaactcaggggatggggagggcg
ttgttggaaattacaaaaataccagttagagagttgaaagtcaggacagg
ttttctatgagcctctaacaatagtcacatttgctaggcggttcagcaat
caaggtgggtcaggtgacttttctttgatggaaactcctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_115704046_115705155
seq2: B6Ng01-123G02.b_49_1166

seq1  GAATTCCCTCTGTCTACTGATTAGACCGGATACTGGCTGGGCGGTGCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCTGTCTACTGATTAGACCGGATACTGGCTGGGCGGTGCAGC  50

seq1  AGGAAAGGCTCTGTGTGTGTGTGTGTGTGTGTGGTCACAAAAGGTCACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGCTCTGTGTGTGTGTGTGTGTGTGTGGTCACAAAAGGTCACAA  100

seq1  AGCTCTCCCCTGGGTATCTCTGAGGCTTGGAGAGTTTTTGTCTTGCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCCCCTGGGTATCTCTGAGGCTTGGAGAGTTTTTGTCTTGCTTTT  150

seq1  TTTTCCCCCCAAAATACTGTCTCACTTGCAAAGCGTGGGCAAGGGAGTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCCCCAAAATACTGTCTCACTTGCAAAGCGTGGGCAAGGGAGTCC  200

seq1  TACGTTCCCCCTCTTTTAGCTTGAGTCCACCCCCAGCTGACACAGTAACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTTCCCCCTCTTTTAGCTTGAGTCCACCCCCAGCTGACACAGTAACG  250

seq1  TGCTTCCCCAGCTGATTTCTGGGTCTGACAGAGCCAGTGAGATTCTTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCCCAGCTGATTTCTGGGTCTGACAGAGCCAGTGAGATTCTTGAA  300

seq1  GGCATGTCTAGAGGGATAGCATATCTGCATCCTTCTGGGCTGGTTAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTCTAGAGGGATAGCATATCTGCATCCTTCTGGGCTGGTTAATTG  350

seq1  TCTTCCTATTCTATGGCCACCCCACAGCACCTCGACAATGAATGTGGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTATTCTATGGCCACCCCACAGCACCTCGACAATGAATGTGGCTA  400

seq1  CTTTGTTTCCAGAGCATATGACACAGACAGGATAAACAAATAATCTAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTCCAGAGCATATGACACAGACAGGATAAACAAATAATCTAGTA  450

seq1  TCTGTACCCTGGTTTTCCAAGCGGGCATAGCCAGAACCTCACCAGGGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACCCTGGTTTTCCAAGCGGGCATAGCCAGAACCTCACCAGGGCTT  500

seq1  GGGAGTGAACCATGGCAGTCCCAGGTATAGTGTTAAGTGGATAGTGATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGAACCATGGCAGTCCCAGGTATAGTGTTAAGTGGATAGTGATTG  550

seq1  GAAGAACAAAGTTAGGCAGCAGTTATTTTGTACTTCAGCACCAGCAGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACAAAGTTAGGCAGCAGTTATTTTGTACTTCAGCACCAGCAGCCA  600

seq1  CTGTGATTAGCATTTGTGAGTTATCTA-TTAATCCCTGCAAACCCTGAAG  649
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTGTGATTAGCATTTGTGAGTTATCTATTTAATCCCTGCAAACCCTGAAG  650

seq1  CCTTATTAGGTAACACATTCATTTGCCCAGCCAATACTTTGCTTTTCCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTAGGTAACACATTCATTTGCCCAGCCAATACTTTGCTTTTCCAG  700

seq1  AGCATTTGTGGGTGTGAGCAGTGGAAAATTTCTCTCAGACAAAAATCTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTGTGGGTGTGAGCAGTGGAAAATTTCTCTCAGACAAAAATCTTC  750

seq1  CACCGGTCACGGATGAGAAAAGCCACCCAGCACGCAGTCACATTAGTGAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGGTCACGGATGAGAAAAGCCACCCAGCACGCAGTCACATTAGTGAC  800

seq1  AGGTTACAATACTGACAGGTTCTCTTGATCCCTGGCTCCTCC-TCCTCCC  848
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGGTTACAATACTGACAGGTTCTCTTGATCCCTGGCTCCTCCTTCCTCCC  850

seq1  TGATAACACTGGGAGCTAGGGACTCC-TGGGGTTTCTGTGACTGTCCTGC  897
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGATAACACTGGGAGCTAGGGACTCCTTGGGGTTTCTGTGACTGTCCTGC  900

seq1  AGCTAGACAACCAGGTACTCAGACACATTTAATGCTCATAATGAGATGAC  947
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGCTAGACAACCAGGTACTCAGACACATTTTATGCTCATAATGAGATGAC  950

seq1  ATCTGTCATTCATATTACTTCATAAGTGAGAAAAGCCAGGTTGTGGGGGA  997
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATCTGTCATTCATATTACTTCATAAGTGAGAAAAGCCAGGCTGTGGGGGA  1000

seq1  GGAG-ATAAGTC-AGAGCTTTCCTGTGATC-TCAGT-ACTT-GGGAGGTT  1042
      |||| ||||||| ||||||||||||||||| ||||| |||| ||||||||
seq2  GGAGAATAAGTCAAGAGCTTTCCTGTGATCTTCAGTAACTTGGGGAGGTT  1050

seq1  G-AGGCAGGAGGATTGCAGGAGTTCAAGCCAAGCCTGGGCTATTTAACAA  1091
      | |||||||||  |  ||| ||||||||||||| ||||||||||| ||||
seq2  GAAGGCAGGAGTTTGCCAGAAGTTCAAGCCAAG-CTGGGCTATTTTACAA  1099

seq1  GACT-CTGTCTCAAAATGAC  1110
      || | ||||||   ||||||
seq2  GAATCCTGTCT-TCAATGAC  1118

seq1: chr10_115875533_115876634
seq2: B6Ng01-123G02.g_68_1158 (reverse)

seq1  CCAGGAGTGTTCATTCAAAG-AAAGTCACCCTGACCCACCCTGAATGTTG  49
      |||||||| |||  |||||| ||||||| ||||||||||| |||   |||
seq2  CCAGGAGT-TTCCATCAAAGAAAAGTCA-CCTGACCCACCTTGA---TTG  45

seq1  CTGGAACCCGCTATGCAAATGTG-CTATTGTTAGAGGCTCATAGAAAA-C  97
      || |||||  ||| ||||||||| |||||||||||||||||||||||| |
seq2  CT-GAACCGCCTA-GCAAATGTGACTATTGTTAGAGGCTCATAGAAAACC  93

seq1  TGTCTTGACTTTCCACTTCTCTTAACTGGTATTTTTGGTATTTTCCAACA  147
      |||| |||||||| || |||| |||||||||||||| ||| |||||||||
seq2  TGTCCTGACTTTCAAC-TCTC-TAACTGGTATTTTT-GTAATTTCCAACA  140

seq1  ACGCCCTCCCCATCCCCTTGAGTTGTGGTTTCTTCCTTTAAATACCCCTT  197
      ||||||||||||||||| |||||||||||||| ||||||||||||||  |
seq2  ACGCCCTCCCCATCCCC-TGAGTTGTGGTTTC-TCCTTTAAATACCC--T  186

seq1  ACCCAGCTACTCAGGGTGCCACAGTCCTCTACCCCTGTGTGGTGTATGAC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCTACTCAGGGTGCCACAGTCCTCTACCCCTGTGTGGTGTATGAC  236

seq1  TGTGGGCCCCAGAGCGCTCTTGG-AATAAAAAGTCCTCTTGCAGTTTGCA  296
      ||||||||||||||||||||||| || |||||||||||||||||||||||
seq2  TGTGGGCCCCAGAGCGCTCTTGGAAAAAAAAAGTCCTCTTGCAGTTTGCA  286

seq1  TCAAGGCCGTTTCTCATGAGTGATTTGGGGTGTCGCCTCTCCTGAGTCAG  346
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCAAGGCCGTTTCTCATGAGTGATTTGGGGTGTCGCCTCT-CTGAGTCAG  335

seq1  AATATGGTCTTTCAACGGTAGGAGTCTTAAAAGTGAGACCCAACCCAGTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGTCTTTCAACGGTAGGAGTCTTAAAAGTGAGACCCAACCCAGTC  385

seq1  AAGAGAAGACAGCCAAGACAAGGAACAAGGCTCATCAGACCAACGAGGGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGACAGCCAAGACAAGGAACAAGGCTCATCAGACCAACGAGGGT  435

seq1  CACCTCGGCCATGTAGGCATCTGAACCAAAGCAGCAGCAGCCCTGCAGGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCGGCCATGTAGGCATCTGAACCAAAGCAGCAGCAGCCCTGCAGGT  485

seq1  AGCATTCAAGAGATGACACAAATGCTCTGGCCAAACTGGTTCCTTTGACG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCAAGAGATGACACAAATGCTCTGGCCAAACTGGTTCCTTTGACG  535

seq1  AGGGTTTGCGAGCACAGGTCTAAGACGTGAGCTGTGACCTTCCATCCTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTGCGAGCACAGGTCTAAGACGTGAGCTGTGACCTTCCATCCTTT  585

seq1  CTGGTGTACCTATGGAATGAGTAAACCCTGCAAGAAAACTCACTCCTCTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTACCTATGGAATGAGTAAACCCTGCAAGAAAACTCACTCCTCTC  635

seq1  CAGGTGCTCGCTCACCAGGGAAGGCAAAGATGAAGGCGTCTTCAGTGTGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCTCGCTCACCAGGGAAGGCAAAGATGAAGGCGTCTTCAGTGTGC  685

seq1  TTGCCGTAGAATCCCCAGTCTATCATTACAGCGTGCTTGTTAAGGGTGGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCGTAGAATCCCCAGTCTATCATTACAGCGTGCTTGTTAAGGGTGGC  735

seq1  TTTTACTGAAAAAGCCTGGAACCATGCCCCTCCCTGCCCTCAAGGGCAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTGAAAAAGCCTGGAACCATGCCCCTCCCTGCCCTCAAGGGCAAA  785

seq1  GGGAGCAGGGAGGAAAACTCTGTTGAGTCTGTACACAAAGAAGACACACC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCAGGGAGGAAAACTCTGTTGAGTCTGTACACAAAGAAGACACACC  835

seq1  AGGACCAACTGCAGGGAGGCAGGTCAACTTTATTTGGGCTGATTCAAGGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCAACTGCAGGGAGGCAGGTCAACTTTATTTGGGCTGATTCAAGGC  885

seq1  TTATAGAATTTTGGGGAGGAGGGGAGGGAAGGAACATCCAAGATGGGCCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAATTTTGGGGAGGAGGGGAGGGAAGGAACATCCAAGATGGGCCA  935

seq1  AGGTCATTGGCTGAGGGTTTATTGGAAATGCCTCGTTAGCACAGGGAAGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATTGGCTGAGGGTTTATTGGAAATGCCTCGTTAGCACAGGGAAGC  985

seq1  ATTTCAGGAATCGAGAGTGCTAGCTGGACAGGTCCTACTCCGGAGAAACT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGGAATCGAGAGTGCTAGCTGGACAGGTCCTACTCCGGAGAAACT  1035

seq1  TGTAATCTAACCACGTGACTTTCTGCAGGTAGAGGCGTGGGGAGGGAGTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCTAACCACGTGACTTTCTGCAGGTAGAGGCGTGGGGAGGGAGTT  1085

seq1  GAATTC  1102
      ||||||
seq2  GAATTC  1091