BAC Information

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BAC

Clone NameB6Ng01-123G23
Chromosome18 (Build37)10 (Build37)
Map Location 14,300,877 - 14,302,100104,053,479 - 104,054,363
singlet/doubletsingletsinglet
Overlap geneLOC100040103
Upstream geneLOC665379, LOC100040358, Zfp521, LOC100040094
Downstream geneLOC100040391, LOC382096, LOC100040129, EG623867, Ss18, LOC100040446, Psma8, Taf4b, LOC669965, Kctd1, EG622268
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123G23.bB6Ng01-123G23.g
ACCDH926600DH926601
length1,220953
definitionDH926600|Mus musculus domesticus DNA, BAC clone: B6Ng01-123G23, 5' end.DH926601|Mus musculus domesticus DNA, BAC clone: B6Ng01-123G23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(14,300,877 - 14,302,100)(104,053,479 - 104,054,363)
sequence
gaattccagggttggtgacagagaaactaaactgcttttaacaatagtga
catgaccagtgacttcagatagtatatgccaggctgcataaaatagatca
taatattgtcaaattagatattagcaccgaagcttccatgtatgtaaata
ttaatggaaatggcagccttcatgaacagatgcatggtggcggttgtgca
aatcaacttagaaacttaagaattgaagaagagattagcatgatgcatct
gaaatgttttccatgtccccatggtgtaggggcagggaatgtgaagcagg
cagagaggtgggcttgcagtaagcaatggtgtcacctcccttgtttcctg
taagatcacctgtggcacctggctaggacttttgctccagactagcatgt
aaccttctatagactgtgcttagcaatgctgtgggaagggtatagaagca
tcatttatcaaatctcaattgcaatatacaagtgattattttgaagaagg
tatatttctaataattataaaccatagctagagaggtgggcaaggagggg
ataaggagcagatggcacggggctgggggagggggcagtgatcaagcttt
ccaactgcatgtggtgttgtcttgctccgttacctcctatgatgagcagg
agtgttttaggggctttttttttttctgcagcaggtcaatgttctctgta
aagagaagcaatgggaagagggcaatggttttgcactgtgtgagaaatat
gtggacacccgttaaagagaaaagacacggagaataatattccttagggc
tcttctctcctgtagcttttctttgtacctgaaaaacatgatttcaaggg
caaataattgtgttgtagcaagagactagactagcatggtactttgaaca
gcaagatagaggagaaaactttaatttatttttctcttatagttattttt
aagtacattttgctctaccaaccattactcaatgtttatcaaatcttatt
cgggacaccaggccatttaggatatttaatcccaaagacattgagtaaag
ccactgtaaaaaaggccagcaagtggttaactggaaatgggccctgaagg
aagttcaacccaatgtgtaatctttagtagaacctacctaagtatccaac
tcccacataaggaaaggaatgagccgttaagaagaagctgactaactggc
ttggggggaacactcctcca
gaattctcacctgaggaatatcaaatggctgagaagcatctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggcaaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggtggttcctta
gaaaattggacatagtactaccggaggatccagcaatacctatcctggtc
atatatccagaagttgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttaaaatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtgtacatttacacaatgg
agtactactcagctattaaaaagaatgaatttatgaaattcctaggcaaa
tggatggacctggagggcattaccctgagtgaggtaacccaatcatgaaa
gaactcacatgatatgtactcactgataagtggatattagcccagaaact
tagaatacccaagatataagatacaatttgcaaaacacatgaaactcaag
aagaacaaagaccaaagtatggatacacacacacacacacacacacacac
acacacacacatatatatatatatatatacttttttgtggtattaggagt
cactgtacctgtatttctgggatatttttcatataaaatttatgttaaaa
ttattagaaaacatgctttaacatctactttatctatttatttttctatt
tactttatatgtagaaggtgtataagtgtttagactgcactatgtacgcg
tactctgtgcatgactggtacagtcagcggggtggaaggggacatcagat
ccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_14300877_14302100
seq2: B6Ng01-123G23.b_45_1264

seq1  GAATTCCAGGGTTGGTGACAGAGAAACTAAACTGCTTTTAACAATAGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGTTGGTGACAGAGAAACTAAACTGCTTTTAACAATAGTGA  50

seq1  CATGACCAGTGACTTCAGATAGTATATGCCAGGCTGCATAAAATAGATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCAGTGACTTCAGATAGTATATGCCAGGCTGCATAAAATAGATCA  100

seq1  TAATATTGTCAAATTAGATATTAGCACCGAAGCTTCCATGTATGTAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTGTCAAATTAGATATTAGCACCGAAGCTTCCATGTATGTAAATA  150

seq1  TTAATGGAAATGGCAGCCTTCATGAACAGATGCATGGTGGCGGTTGTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGAAATGGCAGCCTTCATGAACAGATGCATGGTGGCGGTTGTGCA  200

seq1  AATCAACTTAGAAACTTAAGAATTGAAGAAGAGATTAGCATGATGCATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACTTAGAAACTTAAGAATTGAAGAAGAGATTAGCATGATGCATCT  250

seq1  GAAATGTTTTCCATGTCCCCATGGTGTAGGGGCAGGGAATGTGAAGCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTTTTCCATGTCCCCATGGTGTAGGGGCAGGGAATGTGAAGCAGG  300

seq1  CAGAGAGGTGGGCTTGCAGTAAGCAATGGTGTCACCTCCCTTGTTTCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGGTGGGCTTGCAGTAAGCAATGGTGTCACCTCCCTTGTTTCCTG  350

seq1  TAAGATCACCTGTGGCACCTGGCTAGGACTTTTGCTCCAGACTAGCATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATCACCTGTGGCACCTGGCTAGGACTTTTGCTCCAGACTAGCATGT  400

seq1  AACCTTCTATAGACTGTGCTTAGCAATGCTGTGGGAAGGGTATAGAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTCTATAGACTGTGCTTAGCAATGCTGTGGGAAGGGTATAGAAGCA  450

seq1  TCATTTATCAAATCTCAATTGCAATATACAAGTGATTATTTTGAAGAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTATCAAATCTCAATTGCAATATACAAGTGATTATTTTGAAGAAGG  500

seq1  TATATTTCTAATAATTATAAACCATAGCTAGAGAGGTGGGCAAGGAGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTCTAATAATTATAAACCATAGCTAGAGAGGTGGGCAAGGAGGGG  550

seq1  ATAAGGAGCAGATGGCACGGGGCTGGGGGAGGGGGCAGTGATCAAGCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGAGCAGATGGCACGGGGCTGGGGGAGGGGGCAGTGATCAAGCTTT  600

seq1  CCAACTGCATGTGGTGTTGTCTTGCTCCGTTACCTCCTATGATGAGCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTGCATGTGGTGTTGTCTTGCTCCGTTACCTCCTATGATGAGCAGG  650

seq1  AGTGTTTTAGGGGCTTTTTTTTTTTCTGCAGCAGGTCAATGTTCTCTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTTAGGGGCTTTTTTTTTTTCTGCAGCAGGTCAATGTTCTCTGTA  700

seq1  AAGAGAAGCAATGGGAAGAGGGCAATGGTTTTGCACTGTGTGAGAAATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGCAATGGGAAGAGGGCAATGGTTTTGCACTGTGTGAGAAATAT  750

seq1  GTGGACACCCGTTAAAGAG-AAAGACACGGAGAATAATATTCCTTAGGGC  799
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTGGACACCCGTTAAAGAGAAAAGACACGGAGAATAATATTCCTTAGGGC  800

seq1  TCTTCTCTCCTGTAGCTTTTCTTTGTACCTGAAAAACATGATTTCAAGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTCCTGTAGCTTTTCTTTGTACCTGAAAAACATGATTTCAAGGG  850

seq1  CAAATAATTGTGTTGTAGCAAGAGACTAGACTAGCATGGTACTTTGAACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAATTGTGTTGTAGCAAGAGACTAGACTAGCATGGTACTTTGAACA  900

seq1  GCAAGATAGAGGAGAAAAC-TTAATTTATTTTTCTCTTATAGTTATTTTT  948
      ||||||||||||||||||| ||||||||||||||||||||||||| ||||
seq2  GCAAGATAGAGGAGAAAACTTTAATTTATTTTTCTCTTATAGTTA-TTTT  949

seq1  TAAGTACATTTTGCTCTACCAACCATTACTCAATGTTTATCAAATC-TAT  997
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TAAGTACATTTTGCTCTACCAACCATTACTCAATGTTTATCAAATCTTAT  999

seq1  TCGGGACA-CAAGCCATTTAGGATATTTAATCACAAAGACATTGAGGTAA  1046
      |||||||| || |||||||||||||||||||| |||||||||||| ||||
seq2  TCGGGACACCAGGCCATTTAGGATATTTAATCCCAAAGACATTGA-GTAA  1048

seq1  AGCCACTG-AAAAAGAGCCAGCAAGTGGTT-ACTGG-AATGGGCCCTG-A  1092
      |||||||| |||||  |||||||||||||| ||||| ||||||||||| |
seq2  AGCCACTGTAAAAAAGGCCAGCAAGTGGTTAACTGGAAATGGGCCCTGAA  1098

seq1  GGAAGTTCAACACAAATGTGTAATCTTAGAGAAGACTCAGGACATAGGAT  1142
      ||||||||||| | |||||||||||||  || |||  |   || || |  
seq2  GGAAGTTCAAC-CCAATGTGTAATCTT-TAGTAGAACC--TACCTAAGTA  1144

seq1  ACCAACTCCAACAATAAAGAAAAGGATTAGAGGCAGTACAAGAGAAGACC  1192
       |||||||| || |||| |||| | || |   || ||  |  |||||  |
seq2  TCCAACTCCCAC-ATAAGGAAAGGAATGA---GCCGTTAAGAAGAAG--C  1188

seq1  TGACTTACACATGCTTGGGGGG-ACACT-CTCCA  1224
      |||||   ||  |||||||||| ||||| |||||
seq2  TGACT--AACTGGCTTGGGGGGAACACTCCTCCA  1220

seq1: chr10_104053479_104054363
seq2: B6Ng01-123G23.g_66_738 (reverse)

seq1  TCCACACTTTGGTCTTCGTTC-TCTTGAGTTTAATGTGTTTAGCAAATTG  49
      |||| ||||||||||| |||| |||||||||| |||||||| ||||||||
seq2  TCCATACTTTGGTCTTTGTTCTTCTTGAGTTTCATGTGTTTTGCAAATTG  50

seq1  TATCTTATATCTTGGGTATCCTAAGTTTCTGGGCTAATATCCACTTATCA  99
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TATCTTATATCTTGGGTATTCTAAGTTTCTGGGCTAATATCCACTTATCA  100

seq1  GTGAGTACATATTGCGCGAGTTCCTTTGTGATTGGGTTACCGCACTCAGG  149
      ||||||||||||   | |||||| ||  ||||||||||||| ||||||||
seq2  GTGAGTACATATCATGTGAGTTCTTTCATGATTGGGTTACCTCACTCAGG  150

seq1  ATGATACTCTCCAGGTCCATCCATTTGCCTAGGAATTTCATAAATTCATT  199
       | || | ||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGCCCTCCAGGTCCATCCATTTGCCTAGGAATTTCATAAATTCATT  200

seq1  CTTTTTAATAGCTCCATTTACATTTAATTTAATTAATGTAATTACAATTA  249
      ||||||||||||                                      
seq2  CTTTTTAATAGC--------------------------------------  212

seq1  ATTAATTTATTAATTAAATAATTTAATAATTTAATTGATAAATTAATTTA  299
                                                        
seq2  --------------------------------------------------  212

seq1  ATTAATTAATTTAATTAATTAAATTAAATAATAATTTAATAATAAATTAA  349
                                                        
seq2  --------------------------------------------------  212

seq1  ATATTTTAAAATTAATAATAATTTTATAAGTAAATAATTTAATTAATGTA  399
                                | ||||                  
seq2  --------------------------TGAGTA------------------  218

seq1  ATTTAATTAATGTAATTACATTACATTTAATAGCTCCATTGTGTAAATGT  449
                 |||                   |||||||||||||||||
seq2  -----------GTA-------------------CTCCATTGTGTAAATGT  238

seq1  ACCACATTTTCTGTATCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTC  499
      | ||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  A-CACATTTTCTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTC  287

seq1  CAGCTCCTGGCTATTATAAATAAGGCTGCTATGAATATAGTGGAGCATGT  549
      ||||| ||||||||| ||||||||||||||||||| ||||||||||||||
seq2  CAGCTTCTGGCTATTTTAAATAAGGCTGCTATGAACATAGTGGAGCATGT  337

seq1  GTCCTTCTTACCGGTTGGGGCATCTTCTGGATATATGCCCAGAAGAGGTA  599
      ||||||||||||||||||| || |||||||||||||| |||| | |||||
seq2  GTCCTTCTTACCGGTTGGGACAACTTCTGGATATATGACCAGGATAGGTA  387

seq1  TTGCTGGATCCTCCGGTAGTACTATGTCCAATTTTCTGACGAACCGCCAG  649
      ||||||||||||||||||||||||||||||||||||| | ||||| ||||
seq2  TTGCTGGATCCTCCGGTAGTACTATGTCCAATTTTCTAAGGAACCACCAG  437

seq1  ACGGATTTCCAGAGTGGTTGTACAAGCCTGCAATCCCACCAACAATGGAG  699
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTTCCAGAGTGGTTGTACAAGCCTGCAATCCCACCAACAATGGAG  487

seq1  GAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGAAT  749
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GAGTGTTCCTCTTTCTCCACATCCACGCCAGCATCTGCTGTCACCTGAAT  537

seq1  TTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTT  799
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATCTTTGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTT  587

seq1  TTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGATG  637

seq1  CTTCTCTGCCATTCGGTATTCCTCAGGTGAGAATTC  885
      |||||| |||||| | ||||||||||||||||||||
seq2  CTTCTCAGCCATTTGATATTCCTCAGGTGAGAATTC  673