BAC Information

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BAC

Clone NameB6Ng01-123N12
Chromosome10 (Build37)
Map Location 77,349,604 - 77,498,587
singlet/doubletdoublet
Overlap gene1700009J07Rik, Lrrc3, Trpm2, 1810043G02Rik, Pfkl, Aire
Upstream genePcbp3, LOC100041099, Slc19a1, Col18a1, LOC665762, Pofut2, Adarb1, 1810008A18Rik, Itgb2, Pttg1ip, Sumo3, Ube2g2, LOC674243, LOC670895, Krtap12-1, A030009A09Rik, LOC100041250, LOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351
Downstream geneDnmt3l, Icosl, D10Jhu81e, Pwp2, Tmem1, Agpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123N12.bB6Ng01-123N12.g
ACCDH926902DH926903
length9961,071
definitionDH926902|Mus musculus domesticus DNA, BAC clone: B6Ng01-123N12, 5' end.DH926903|Mus musculus domesticus DNA, BAC clone: B6Ng01-123N12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,349,604 - 77,350,600)(77,497,499 - 77,498,587)
sequence
gaattctgccttaaagggacagtggatatcacattttacctcaaatacat
aggccctagcagtctctagggccccggctctcccagctacccctgctgtg
cagcctgaccaacacctatttattgtattttatctatatgaaaatatatt
tatatttctctttacaaaaaaatacatggatggtatcctttttctttggg
gctcagcagtggacacatgcagagaaagacatccttctgtgggggggagt
cttctactgatgtcaggttattcttaaaaacacaaggggcaaagttagat
cagaaatcccaagtccctctccttcctcaggagccccattatgaagacac
aggtggcttctctggctgcacaccaactgatcccaacagtgcattgaact
agatccatatacatggacccaaggccttccagaaacagtcagattgcccc
ttcccattggccaggacaagaattagacctccctatgcttttctggatag
ttccagaagtcgcatagatgtgtttcaatccccgaaggacagcacagaag
gcagggaccctgagaaggccccagggtaggcaggaagcaataaggcctta
agggacatccctgtgggagatgcaagggcacaggtcttccaccccaggtc
ctggaatccagcaaccattggcagactgggaggggtgggttgtacagagg
aacccagcagacctgttttcagacctttctctagctgccagagctggaac
caggaggcatggccaggaccaaggctgctgtgggcacacactcaggagcc
ttgccaggtttatggcacttttaagtgtaggtggactttgagcaaggggt
caaaccatctgttttatatgttagtgccagcacctgcatggtcacagagt
atcgctcaagtgttaccgtgaagctgagaccctctcttgcacacatgcat
gcaggtcacagaggctgacaaaagagaacaatgcagacagacagaa
gaattccagatcctcgtgggactgaggtcagcttcagagaaaaccagggg
cccatccagggagctcaaagccagctctgatgctgctgtcacatatgtga
acctgctggccccgcaccctgcagctcctctgctggagccttcagcactg
tgccctctactgagtgctgggaatgaggggcggccagtgagtgaggagac
ccctagggcctgggtgctatctttggggaagaggggctctggacctacgg
gatagttgtatgtccaaaacgggacctctggtggactcccggggctagga
attagacggacattcctggggtcaggggagggctctgccaagagacactt
gttcatataatagtaacacagggactgtaggggagagcaccaagggaact
ctccagctgggcctttgagatggctcagtgggtaaaagggtttgcagcca
agatggaagacctgagttggattcccaaaactcacatggtggaaagagtg
actcggtctgcaagtggtcctctgatctccatgtgcatgaccaccaataa
atagtgaattagctagaaaagaagggaaggagggaagtaagacaggcaag
caggcaggcaggcaggcaggcaggcaggcaggcagacagacagacagaca
gacagacagacaggcttagcttggttatccagatgatacaccctccccca
tcatgaagcaggacaacaaacatctcgaatccacagaccctgtccacttc
tgttggttacctttcttttttcttttcagagtccccactttaattttaat
taattaatttattatttacttattcacttacatcccgctcactgcccctt
ccccatcatcctctcgcagtctttcccaccctctcctcctccaaagctct
ctggagtcccacatttgtagatcagagctggactcccagatggactgtcg
tggaaagcagctggaaggcgctttctgatcctgctcccctcgggacatca
ggactcagaatttccagtcccactcacgcggactggaaaccctgaggtta
cagttaaacctggcctggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_77349604_77350600
seq2: B6Ng01-123N12.b_49_1043

seq1  GAATTCTGCCTTAAAGGGACAGTGGATATCACATTTTACCTCAAATACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCTTAAAGGGACAGTGGATATCACATTTTACCTCAAATACAT  50

seq1  AGGCCCTAGCAGTCTCTAGGGCCCCGGCTCTCCCAGCTACCCCTGCTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTAGCAGTCTCTAGGGCCCCGGCTCTCCCAGCTACCCCTGCTGTG  100

seq1  CAGCCTGACCAACACCTATTTATTGTATTTTATCTATATGAAAATATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGACCAACACCTATTTATTGTATTTTATCTATATGAAAATATATT  150

seq1  TATATTTCTCTTTACAAAAAAATACATGGATGGTATCCTTTTTCTTTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTCTCTTTACAAAAAAATACATGGATGGTATCCTTTTTCTTTGGG  200

seq1  GCTCAGCAGTGGACACATGCAGAGAAAGACATCCTTCTGTGGGGGGGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCAGTGGACACATGCAGAGAAAGACATCCTTCTGTGGGGGGGAGT  250

seq1  CTTCTACTGATGTCAGGTTATTCTTAAAAACACAAGGGGCAAAGTTAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTACTGATGTCAGGTTATTCTTAAAAACACAAGGGGCAAAGTTAGAT  300

seq1  CAGAAATCCCAAGTCCCTCTCCTTCCTCAGGAGCCCCATTATGAAGACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCCCAAGTCCCTCTCCTTCCTCAGGAGCCCCATTATGAAGACAC  350

seq1  AGGTGGCTTCTCTGGCTGCACACCAACTGATCCCAACAGTGCATTGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCTTCTCTGGCTGCACACCAACTGATCCCAACAGTGCATTGAACT  400

seq1  AGATCCATATACATGGACCCAAGGCCTTCCAGAAACAGTCAGATTGCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCATATACATGGACCCAAGGCCTTCCAGAAACAGTCAGATTGCCCC  450

seq1  TTCCCATTGGCCAGGACAAGAATTAGACCTCCCTATGCTTTTCTGGATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATTGGCCAGGACAAGAATTAGACCTCCCTATGCTTTTCTGGATAG  500

seq1  TTCCAGAAGTCGCATAGATGTGTTTCAATCCCCGAAGGACAGCACAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAAGTCGCATAGATGTGTTTCAATCCCCGAAGGACAGCACAGAAG  550

seq1  GCAGGGACCCTGAGAAGGCCCCAGGGTAGGCAGGAAGCAATAAGGCCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGACCCTGAGAAGGCCCCAGGGTAGGCAGGAAGCAATAAGGCCTTA  600

seq1  AGGGACATCCCTGTGGGAGATGCAAGGGCACAGGTCTTCCACCCCAGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACATCCCTGTGGGAGATGCAAGGGCACAGGTCTTCCACCCCAGGTC  650

seq1  CTGGAATCCAGCAACCATTGGCAGACTGGGAGGGGTGGGTTGTACAGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATCCAGCAACCATTGGCAGACTGGGAGGGGTGGGTTGTACAGAGG  700

seq1  AACCCAGCAGACCTGTTTTCAGACCTTTCTCTAGCTGCCAGAGCTGGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGCAGACCTGTTTTCAGACCTTTCTCTAGCTGCCAGAGCTGGAAC  750

seq1  CAGGAGGCATGGCCAGGACCAAGGCTGCTGTGGGCACACACTCAGGAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGCATGGCCAGGACCAAGGCTGCTGTGGGCACACACTCAGGAGCC  800

seq1  TTGCCAGGTTTAATGGCACTTTTAAGTGTAGGTGGACTTTGAGCAAGGGG  850
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGGTTT-ATGGCACTTTTAAGTGTAGGTGGACTTTGAGCAAGGGG  849

seq1  TCAAACCATCTGTTTTATATGTTAGTGCCAGCACCTGCATGGTCACCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCAAACCATCTGTTTTATATGTTAGTGCCAGCACCTGCATGGTCA-CAGA  898

seq1  GTATCGCTCAAGTGTTACCGTGAAGCTGAGACCCTCTCTTGCACACATGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCGCTCAAGTGTTACCGTGAAGCTGAGACCCTCTCTTGCACACATGC  948

seq1  ATGCAGGTCACAGAGGCTGACAAAAGAGAACAATGCAGACAGACAGA  997
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGTCACAGAGGCTGACAAAAGAGAACAATGCAGACAGACAGA  995

seq1: chr10_77497499_77498587
seq2: B6Ng01-123N12.g_70_1140 (reverse)

seq1  CCACCA-GCCCGGGTTAACTGGGAAACCTCAGGGTTTCAAGT-CGCGTGA  48
      |||||| ||| || ||||||  | |||||||||||||| ||| |||||||
seq2  CCACCAGGCCAGGTTTAACT--GTAACCTCAGGGTTTCCAGTCCGCGTGA  48

seq1  GTGGGACTGTAAATTCTGAGTTCTGGATGTCCCGAGGGGAGCAGGGGTCA  98
      ||||||||| ||||||||||| || |||||||||||||||||| || |||
seq2  GTGGGACTGGAAATTCTGAGTCCT-GATGTCCCGAGGGGAGCA-GGATCA  96

seq1  GAAAGCGGCCTTTCCAAGCTGCTTTCCACGGACCAGTCCATCCTGGGAGT  148
      |||||| |||||  | ||||||||||||||   |||||||| ||||||||
seq2  GAAAGC-GCCTT--CCAGCTGCTTTCCACG--ACAGTCCAT-CTGGGAGT  140

seq1  CCAGCTCTGATCCTACCAAATGTGGGACTCCAGAAGAGCTTTGGAGGAGG  198
      ||||||||||| ||| ||||||||||||||||| |||||||||||||| |
seq2  CCAGCTCTGAT-CTA-CAAATGTGGGACTCCAG-AGAGCTTTGGAGGA-G  186

seq1  GAGAGGGTGGGGAAAGACTGCGAGAGGATGATGGGGAAGGGGCAGTGAGC  248
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGT-GGGAAAGACTGCGAGAGGATGATGGGGAAGGGGCAGTGAGC  235

seq1  GGGATGTAAAGTGAATAAGTAAAATAAATAAATTAATTAATTAAATTTAA  298
      ||||||| |||||||||||||||   ||||||||||||||||||| || |
seq2  GGGATGT-AAGTGAATAAGTAAA--TAATAAATTAATTAATTAAAATT-A  281

seq1  AAGTGGGGACTCTGAAAAAGAAAAAAAGAAAGGTAACCAACAGAAGTGGA  348
      ||||||||||||||||||   |||||||||||||||||||||||||||||
seq2  AAGTGGGGACTCTGAAAA--GAAAAAAGAAAGGTAACCAACAGAAGTGGA  329

seq1  CAGGGTCTGTGGATTCGAGATGTTTGTTGTCCTGCTTCATGATGGGGGAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCTGTGGATTCGAGATGTTTGTTGTCCTGCTTCATGATGGGGGAG  379

seq1  GGTGTATCATCTGGATAACCAAGCTAAGCCTGTCTGTCTGTCTGTCTGTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTATCATCTGGATAACCAAGCTAAGCCTGTCTGTCTGTCTGTCTGTC  429

seq1  TGTCTGTCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCTTGCCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCTTGCCTG  479

seq1  TCTTACTTCCCTCCTTCCCTTC-TTTCTAGCTAATTCACTATTTATTGGT  547
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCTTACTTCCCTCCTTCCCTTCTTTTCTAGCTAATTCACTATTTATTGGT  529

seq1  GGTCATGCACATGGAGATCAGAGGACCACTTGCAGACCGAGTCACTCTTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATGCACATGGAGATCAGAGGACCACTTGCAGACCGAGTCACTCTTT  579

seq1  CCACCATGTGAGTTTTGGGAATCCAACTCAGGTCTTCCATCTTGGCTGCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATGTGAGTTTTGGGAATCCAACTCAGGTCTTCCATCTTGGCTGCA  629

seq1  AACCCTTTTACCCACTGAGCCATCTCAAAGGCCCAGCTGGAGAGTTCCCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTTTACCCACTGAGCCATCTCAAAGGCCCAGCTGGAGAGTTCCCT  679

seq1  TGGTGCTCTCCCCTACAGTCCCTGTGTTACTATTATATGAACAAGTGTCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTCTCCCCTACAGTCCCTGTGTTACTATTATATGAACAAGTGTCT  729

seq1  CTTGGCAGAGCCCTCCCCTGACCCCAGGAATGTCCGTCTAATTCCTAGCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCAGAGCCCTCCCCTGACCCCAGGAATGTCCGTCTAATTCCTAGCC  779

seq1  CCGGGAGTCCACCAGAGGTCCCGTTTTGGACATACAACTATCCCGTAGGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGAGTCCACCAGAGGTCCCGTTTTGGACATACAACTATCCCGTAGGT  829

seq1  CCAGAGCCCCTCTTCCCCAAAGATAGCACCCAGGCCCTAGGGGTCTCCTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCCCCTCTTCCCCAAAGATAGCACCCAGGCCCTAGGGGTCTCCTC  879

seq1  ACTCACTGGCCGCCCCTCATTCCCAGCACTCAGTAGAGGGCACAGTGCTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTGGCCGCCCCTCATTCCCAGCACTCAGTAGAGGGCACAGTGCTG  929

seq1  AAGGCTCCAGCAGAGGAGCTGCAGGGTGCGGGGCCAGCAGGTTCACATAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCCAGCAGAGGAGCTGCAGGGTGCGGGGCCAGCAGGTTCACATAT  979

seq1  GTGACAGCAGCATCAGAGCTGGCTTTGAGCTCCCTGGATGGGCCCCTGGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGCAGCATCAGAGCTGGCTTTGAGCTCCCTGGATGGGCCCCTGGT  1029

seq1  TTTCTCTGAAGCTGACCTCAGTCCCACGAGGATCTGGAATTC  1089
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGAAGCTGACCTCAGTCCCACGAGGATCTGGAATTC  1071