BAC Information

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BAC

Clone NameB6Ng01-123N23
ChromosomeX (Build37)10 (Build37)
Map Location 51,760,445 - 51,761,638104,053,602 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040609, Etd, Cxx1c, LOC100040644, Cxx1a, Cxx1b, AW822252, 4930502E18Rik, 1700013H16Rik, EG547172, Zfp36l3, Xlr, LOC100040719, LOC100040730, LOC100040260, LOC100040271, LOC100040765, LOC194788, LOC100040789, LOC666072, LOC100040317, LOC625476, LOC625508, LOC666096
Downstream geneLOC100040867, LOC100040894, LOC666122, LOC666135, LOC100038960, EG666151, EG666161, EG666199, 4930527E24Rik, LOC626274, LOC625210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123N23.bB6Ng01-123N23.g
ACCDH926924DH926925
length1,199947
definitionDH926924|Mus musculus domesticus DNA, BAC clone: B6Ng01-123N23, 5' end.DH926925|Mus musculus domesticus DNA, BAC clone: B6Ng01-123N23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(51,760,445 - 51,761,638)(104,053,602 - 104,054,363)
sequence
gaattctttaaaatttattctttaatctttttttataagttcagacttta
tcccctcccttgtccaccctctgactgttccacatcccatacctcccccc
cccacacacccatctccaagaggatgtccccaccatcctaccccactcca
ccagacatcccttctccctgtagacttaagtctcttgagggttaaattca
ccttctccgactgagtccagacccggcagacctctgctgtatatgtggtg
gggggcttcatatcatctggtatatgcttcctggttggtggttcagtgtc
tgagagatcctggaaggtccaggttagtcgagactgctggtctttctaca
ggttctccctcttcctctgcttcttccagcttttccctaattcaaccaca
ggagttcccagattctgtccattggttgcatgtaaatttctgcatctgac
tctttcacctgctggttaggtctttcagagggcagtcatgattgtctcat
ttttgtgagcacagcatagcatcagtaatagtatcaggccttgatgcctc
tctttgagctggatcccagtttgggcctgtcactggatctccttttcctc
aggcttctctccatttttgtccctgctgttctttcagacagtaacaatta
tgagtcagagcttttgactgtgggatgaccaccccaactttacacttgat
gtcttgtctctccactagaggaggactctataagttccctctcctcactg
caggatatttcatctaaggtccctccctttgaatcctgaaattctctcac
ctcccaggtctctggtacattctagaaagttttctcacctcctacctaac
aaagtttctgtttccattctttttgctggtcctcagtgcttcagtcctgc
tccccacccccacaatacctgatcatgttcctttcttcctgtccttgtcc
ccttttccatccaagtgcctcctccccttccctgtagtgatttttgaacc
ttaacatttctaattatttttattccataaagatagttgaaacatttttt
gattcaataacttatttaggtcccgaagtacaaagaaaacaaaaaatcga
aggccaatgggttgggtttacctccatttattttgaattttggaaaaggc
acatagaattttgttatgtcctaggaaggccttagaaagttttaggttc
gaattctcacctgaggagtaccgaatggctgtgaagcacctgaaaaaatg
ttcagcatccttaatcatcagaaatgcaaatcaaaacaaccctgagattc
catctcacaccagtcagaatggctaagataaaaaattcaggtgataggag
atgctggcgaggatgtggagaaagaggaacactcctccattgttggtggg
attgcaagcttgtacaaccactctggaaatcagtctggtggttcctcaga
aaattggacatattactactggaggatcgagcaatacctctcctgggcat
atatccagaagatgtcccaaccagtaagaaggacacatgctccactatgt
tcatagcagacttatttataatagctagaacatggaaagaacccagatgc
ccctcaacagaggaatggatacaaaaatgtgattcatttacacaatggag
tactactgagctattaaaaggaatgaatttatgaaattcctaggcaaatg
attggacctatagggcatcatcctgcttgaggtaacacaatcacaaatga
actcaaatgatatgttctcactgataagtggatattagcccagaaactta
atatacccgagatataagatacaattctgcaaaacacatgaaactgaaga
agaacgaagaccgaagtgtggacactttgccccttcttagaattggaaaa
aatcacccatggaaggagttacagagataaagtttggagctgagacaaaa
ggatggaccatctagacactaccatatccagggatccatcctataattag
cctccaaacaatgacaccattgcatacactagctagctcagttataatac
aagttcaccttactttctaaattggaaattcatgttcacaactgagaatc
atcagtatccaatgatgtaattattaatccaatattcaaaaatgtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_51760445_51761638
seq2: B6Ng01-123N23.b_50_1248

seq1  GAATTCTTTAAAATTTATTCTTTAATCTTTTTTTATAAGTTCAGACTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAAATTTATTCTTTAATCTTTTTTTATAAGTTCAGACTTTA  50

seq1  TCCCCTCCCTTGTCCACCCTCTGACTGTTCCACATCCCATACCTCCCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCCCTTGTCCACCCTCTGACTGTTCCACATCCCATACCTCCCCCC  100

seq1  CCCACACACCCATCTCCAAGAGGATGTCCCCACCATCCTACCCCACTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACACCCATCTCCAAGAGGATGTCCCCACCATCCTACCCCACTCCA  150

seq1  CCAGACATCCCTTCTCCCTGTAGACTTAAGTCTCTTGAGGGTTAAATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACATCCCTTCTCCCTGTAGACTTAAGTCTCTTGAGGGTTAAATTCA  200

seq1  CCTTCTCCGACTGAGTCCAGACCCGGCAGACCTCTGCTGTATATGTGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCCGACTGAGTCCAGACCCGGCAGACCTCTGCTGTATATGTGGTG  250

seq1  GGGGGCTTCATATCATCTGGTATATGCTTCCTGGTTGGTGGTTCAGTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCTTCATATCATCTGGTATATGCTTCCTGGTTGGTGGTTCAGTGTC  300

seq1  TGAGAGATCCTGGAAGGTCCAGGTTAGTCGAGACTGCTGGTCTTTCTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGATCCTGGAAGGTCCAGGTTAGTCGAGACTGCTGGTCTTTCTACA  350

seq1  GGTTCTCCCTCTTCCTCTGCTTCTTCCAGCTTTTCCCTAATTCAACCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCCCTCTTCCTCTGCTTCTTCCAGCTTTTCCCTAATTCAACCACA  400

seq1  GGAGTTCCCAGATTCTGTCCATTGGTTGCATGTAAATTTCTGCATCTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTCCCAGATTCTGTCCATTGGTTGCATGTAAATTTCTGCATCTGAC  450

seq1  TCTTTCACCTGCTGGTTAGGTCTTTCAGAGGGCAGTCATGATTGTCTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCACCTGCTGGTTAGGTCTTTCAGAGGGCAGTCATGATTGTCTCAT  500

seq1  TTTTGTGAGCACAGCATAGCATCAGTAATAGTATCAGGCCTTGATGCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGAGCACAGCATAGCATCAGTAATAGTATCAGGCCTTGATGCCTC  550

seq1  TCTTTGAGCTGGATCCCAGTTTGGGCCTGTCACTGGATCTCCTTTTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAGCTGGATCCCAGTTTGGGCCTGTCACTGGATCTCCTTTTCCTC  600

seq1  AGGCTTCTCTCCATTTTTGTCCCTGCTGTTCTTTCAGACAGTAACAATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCTCTCCATTTTTGTCCCTGCTGTTCTTTCAGACAGTAACAATTA  650

seq1  TGAGTCAGAGCTTTTGACTGTGGGATGACCACCCCAACTTTACACTTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCAGAGCTTTTGACTGTGGGATGACCACCCCAACTTTACACTTGAT  700

seq1  GTCTTGTCTCTCCACTAGAGGAGGACTCTATAAGTTCCCTCTCCTCACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTCTCTCCACTAGAGGAGGACTCTATAAGTTCCCTCTCCTCACTG  750

seq1  CAGGATATTTCATCTAAGGTCCCTCCCTTTGAATCCTGAAATTCTCTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATATTTCATCTAAGGTCCCTCCCTTTGAATCCTGAAATTCTCTCAC  800

seq1  CTCCCAGGTCTCTGGTACATTCTAGAAGGTTTTCTCACCTCCTACCTAAC  850
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTCCCAGGTCTCTGGTACATTCTAGAAAGTTTTCTCACCTCCTACCTAAC  850

seq1  AAAGTTTTCTGTTTCCATTCTTTTTGCTGGTCCTCAGTGCTTCAGTCCTG  900
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAG-TTTCTGTTTCCATTCTTTTTGCTGGTCCTCAGTGCTTCAGTCCTG  899

seq1  CTCCCCACCCCCACAATACCTGATCATGTTCCTTTCTTCCTGTCCTTGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCACCCCCACAATACCTGATCATGTTCCTTTCTTCCTGTCCTTGTC  949

seq1  CCCTTTTCCATCCAAGTGCCTCCTTCCCCCTCCCTGTAGTGATTTTTGAA  1000
      ||||||||||||||||||||||| ||||| ||||||||||||||||||||
seq2  CCCTTTTCCATCCAAGTGCCTCC-TCCCCTTCCCTGTAGTGATTTTTGAA  998

seq1  CCTTAACATTTCTAATTATTTTTATT-CATAAAGATAGTTGAAACATTTT  1049
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCTTAACATTTCTAATTATTTTTATTCCATAAAGATAGTTGAAACATTTT  1048

seq1  TTGATTCATTATCTTA-TTAGTTCCCGAAGGTAC-AAGATA--CAAATAT  1095
      |||||||| || |||| |||| ||||||| |||| |||| |   ||| ||
seq2  TTGATTCAATAACTTATTTAGGTCCCGAA-GTACAAAGAAAACAAAAAAT  1097

seq1  CGAAGGCACATTGGTTTGGTTTTACTTCATTTA-TTTGATTTTTGAGATA  1144
      |||||||  || |||| |||||  || |||||| ||||| |||||  | |
seq2  CGAAGGCCAATGGGTTGGGTTTACCTCCATTTATTTTGAATTTTGGAAAA  1147

seq1  GGCACATAGTATGTTTTGTATGT-CTAGGAAGGTC-TAGAATG-TTTAGG  1191
      ||||||||| || |||  ||||| ||||||||| | ||||| | ||||||
seq2  GGCACATAGAAT-TTTGTTATGTCCTAGGAAGGCCTTAGAAAGTTTTAGG  1196

seq1  TTC  1194
      |||
seq2  TTC  1199

seq1: chr10_104053602_104054363
seq2: B6Ng01-123N23.g_67_613 (reverse)

seq1  TTTGTGATTGGGTTACCGCACTCAGGATGATACTCTCCAGGTCCATCCAT  50
      |||||||||| |||||| ||  ||||||||| | ||  |||||||  |||
seq2  TTTGTGATTGTGTTACCTCAAGCAGGATGATGCCCTATAGGTCCAATCAT  50

seq1  TTGCCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTCCATTTACATT  100
      ||||||||||||||||||||||||||| ||||||||||||          
seq2  TTGCCTAGGAATTTCATAAATTCATTCCTTTTAATAGCTC----------  90

seq1  TAATTTAATTAATGTAATTACAATTAATTAATTTATTAATTAAATAATTT  150
                                                        
seq2  --------------------------------------------------  90

seq1  AATAATTTAATTGATAAATTAATTTAATTAATTAATTTAATTAATTAAAT  200
                                                        
seq2  --------------------------------------------------  90

seq1  TAAATAATAATTTAATAATAAATTAAATATTTTAAAATTAATAATAATTT  250
                                                        
seq2  --------------------------------------------------  90

seq1  TATAAGTAAATAATTTAATTAATGTAATTTAATTAATGTAATTACATTAC  300
          ||||                             |||          
seq2  ----AGTA-----------------------------GTA----------  97

seq1  ATTTAATAGCTCCATTGTGTAAATGTACCACATTTTCTGTATCTATTCCT  350
               |||||||||||||||| | |||||||| |||||| ||||||
seq2  ---------CTCCATTGTGTAAATGAATCACATTTT-TGTATCCATTCCT  137

seq1  CTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATTATAAATAAG  400
      ||||||||||||||||||||||||||||  | || |||||||||||||||
seq2  CTGTTGAGGGGCATCTGGGTTCTTTCCATGTTCTAGCTATTATAAATAAG  187

seq1  GCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGTTGGGGCATC  450
       |||||||||| ||||||||||||||||||||||||| ||||||| ||||
seq2  TCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACTGGTTGGGACATC  237

seq1  TTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCGGTAGTACTA  500
      |||||||||||||||||| |||||||||||| |||||||| |||||| ||
seq2  TTCTGGATATATGCCCAGGAGAGGTATTGCTCGATCCTCCAGTAGTAATA  287

seq1  TGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGTGGTTGTACA  550
      ||||||||||||||| ||||| |||||| |||||||||||||||||||||
seq2  TGTCCAATTTTCTGAGGAACCACCAGACTGATTTCCAGAGTGGTTGTACA  337

seq1  AGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCC  600
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCC  387

seq1  TCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTG  650
      |||||||||||| || |||||||||||||| |||||||||||||||||||
seq2  TCGCCAGCATCTCCTATCACCTGAATTTTTTATCTTAGCCATTCTGACTG  437

seq1  GTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATT  700
      ||||||| |||||||||||||||||||||||||||||||  |||||||||
seq2  GTGTGAGATGGAATCTCAGGGTTGTTTTGATTTGCATTT--CTGATGATT  485

seq1  AAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTC  750
      ||||||| |||||||||||||||||||||| | ||||||||||| |||||
seq2  AAGGATGCTGAACATTTTTTCAGGTGCTTCACAGCCATTCGGTACTCCTC  535

seq1  AGGTGAGAATTC  762
      ||||||||||||
seq2  AGGTGAGAATTC  547