BAC Information

Click to search

BAC

Clone NameB6Ng01-124C12
Chromosome10 (Build37)
Map Location 98,775,788 - 98,924,043
singlet/doubletdoublet
Overlap geneGad1-ps, LOC100042232
Upstream geneEG667438, EG432494, Atp2b1, Wdr51b, Galnt4, Dusp6, LOC100042222
Downstream geneLOC667502, Csl, LOC100042246, Kitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124C12.bB6Ng01-124C12.g
ACCDH927137DH927138
length1,058900
definitionDH927137|Mus musculus domesticus DNA, BAC clone: B6Ng01-124C12, 5' end.DH927138|Mus musculus domesticus DNA, BAC clone: B6Ng01-124C12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,775,788 - 98,776,854)(98,923,140 - 98,924,043)
sequence
gaattcattccaagatgctatggaaatttcttgggataaactttttagaa
gattcaatatgatttgggatacccatggaagctttcccgtaactttattg
aagtatatattttttttcatgcaaatagaatgtgaatcagattatcattc
tgatgtcttactttatttacaagatatatgaccttcgaatatttatttga
gctttctatgtctccatttctccaactctagatacctgataatactattg
actttagttaaagggttgttgaaaaggtcagtgattaaaaattaattgaa
gaataaaagtcctatccaaaaatattgaactctgtggaaataatgggcat
gaaaggaaattcacagagacaaaaatgaattaatgaaagttagtacaata
aaaacctattggcaaaattttttagtattgctctatgttcttataattta
gtattataattaaaattttatcgttatttttagtgttataatttcaatgg
aaaatagctattatagcaaaaagagtttcaatgaaagaagaaacttgaag
gcaaaaagagtttatgctataaatattcttagggctaaaacttcctcagg
agcaaaaatggcagagtcaaaatataggcttgaaatgtcttgtagatttt
actttgtaagttgatttttttagttgttgttgaaaatttatcttcagcaa
ccttgtatatcgtccagtagtcatctacactactttcagctctctcatga
taccctactgtgcgcaaatacaattttatttgcaaacagacttcttttat
tatgcagttagattacactaagatatcttgttattatagctcaatgaaga
gcactttgtaggaggaagataatttttataaaaggtactttttttctttt
ttgagatggggtttctctgtgtagcccgggctattctggtactttcctct
atagaccagactggctttgactcagacgatcccacctgcttctgcctccc
acgcactggaccaatgtgtgtgtccaccccatcctaaaagtacatttctt
gacattaa
gaattcactctcccctcccccaaggaaaaaagcgctaaagaacaaggtca
aaggcgagaggctctggggagtcactaaggtgataagagtgcttcagaga
cagtgacaaaggggtagtctagtcgcctttgacctttcagaaaatcgtct
caagtgtgatgcagatcaaagtcactggttgctgagagtctctaaaaaaa
gaagcagtagccaatgtggcttagggtcttaaactatgcacgagagaggt
tgaagatgaaaagccgcaaggtcgggcgaggttccttcaagactgttcgg
atcacagaggactcttccgaggggcaaagaatttacatcttcaacaaccc
cccagcaaacattgttcagccatgcacccatgtgacttcctcgatgtaaa
gaactccgagatagcagcctcagttcctttttcgcttttgaaagcaaaca
gttctgcaagaaaacaatacaatggctttcccaggattggggcggggtgg
gtgtgaagccaaaggaagtgagttctctttttttactttgtgggtcccga
ggatggcgcaggaatggctagccttggcacgagggccaatggttaaaaac
aagaaatctgaaaagaaggaatctctttttgctttcaccacaatgcaaaa
agagagagaggaaaaaaaagcaaatcaaaataaattaattcattttatta
ggatagttttgtctaagatcttgttaaaccctattaaaattattgaacag
tttacctttcagatcaacaaccattggcatcttatagcctccattttaag
aacaaaagagtaatgatatagggaattttaacttcttcctggcaagtcct
caggagatttagttcagtaaagagacagaagtttaaataacacgaggcac

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_98775788_98776854
seq2: B6Ng01-124C12.b_46_1103

seq1  GAATTCATTCCAAGATGCTATGGAAATTTCTTGGGATAAACTTTTTAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCAAGATGCTATGGAAATTTCTTGGGATAAACTTTTTAGAA  50

seq1  GATTCAATATGATTTGGGATACCCATGGAAGCTTTCCCGTAACTTTATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAATATGATTTGGGATACCCATGGAAGCTTTCCCGTAACTTTATTG  100

seq1  AAGTATATATTTTTTTTCATGCAAATAGAATGTGAATCAGATTATCATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATATATTTTTTTTCATGCAAATAGAATGTGAATCAGATTATCATTC  150

seq1  TGATGTCTTACTTTATTTACAAGATATATGACCTTCGAATATTTATTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCTTACTTTATTTACAAGATATATGACCTTCGAATATTTATTTGA  200

seq1  GCTTTCTATGTCTCCATTTCTCCAACTCTAGATACCTGATAATACTATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTATGTCTCCATTTCTCCAACTCTAGATACCTGATAATACTATTG  250

seq1  ACTTTAGTTAAAGGGTTGTTGAAAAGGTCAGTGATTAAAAATTAATTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGTTAAAGGGTTGTTGAAAAGGTCAGTGATTAAAAATTAATTGAA  300

seq1  GAATAAAAGTCCTATCCAAAAATATTGAACTCTGTGGAAATAATGGGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAAGTCCTATCCAAAAATATTGAACTCTGTGGAAATAATGGGCAT  350

seq1  GAAAGGAAATTCACAGAGACAAAAATGAATTAATGAAAGTTAGTACAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAAATTCACAGAGACAAAAATGAATTAATGAAAGTTAGTACAATA  400

seq1  AAAACCTATTGGCAAAATTTTTTAGTATTGCTCTATGTTCTTATAATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTATTGGCAAAATTTTTTAGTATTGCTCTATGTTCTTATAATTTA  450

seq1  GTATTATAATTAAAATTTTATCGTTATTTTTAGTGTTATAATTTCAATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATAATTAAAATTTTATCGTTATTTTTAGTGTTATAATTTCAATGG  500

seq1  AAAATAGCTATTATAGCAAAAAGAGTTTCAATGAAAGAAGAAACTTGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGCTATTATAGCAAAAAGAGTTTCAATGAAAGAAGAAACTTGAAG  550

seq1  GCAAAAAGAGTTTATGCTATAAATATTCTTAGGGCTAAAACTTCCTCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAAGAGTTTATGCTATAAATATTCTTAGGGCTAAAACTTCCTCAGG  600

seq1  AGCAAAAATGGCAGAGTCAAAATATAGGCTTGAAATGTCTTGTAGATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAATGGCAGAGTCAAAATATAGGCTTGAAATGTCTTGTAGATTTT  650

seq1  ACTTTGTAAGTTGATTTTTTTAGTTGTTGTTGAAAATTTATCTTCAGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTAAGTTGATTTTTTTAGTTGTTGTTGAAAATTTATCTTCAGCAA  700

seq1  CCTTGTATATCGTCCAGTAGTCATCTACACTACTTTCAGCTCTCTCATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTATATCGTCCAGTAGTCATCTACACTACTTTCAGCTCTCTCATGA  750

seq1  TACCCTACTGTGCGCAAATACAATTTTATTTGCAAACAGACTTCTTTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTACTGTGCGCAAATACAATTTTATTTGCAAACAGACTTCTTTTAT  800

seq1  TATGCAGTTAGATTACACTAAGATATCTTGTTATTATAGCTCAATGAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGTTAGATTACACTAAGATATCTTGTTATTATAGCTCAATGAAGA  850

seq1  GCACTTTGTAGGAGGAAGATAATTTTTATAAAAGGTACTTTTTTTTTTTT  900
      ||||||||||||||||||||||||||||||||||||||       |||||
seq2  GCACTTTGTAGGAGGAAGATAATTTTTATAAAAGGTAC-------TTTTT  893

seq1  TTTTTTTTTGAGATGGGGTTTCTCTGTGTAGCCCGGGCTATCCTGGTACT  950
      || |||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTCTTTTTTGAGATGGGGTTTCTCTGTGTAGCCCGGGCTATTCTGGTACT  943

seq1  TT-CTCTATAGACCAGACTGGCTTTGAACTCAGACAGACCCACCTGCTTC  999
      || ||||||||||||||||||||||| ||||||||   ||||||||||||
seq2  TTCCTCTATAGACCAGACTGGCTTTG-ACTCAGACGATCCCACCTGCTTC  992

seq1  TGCCTCCCACGCACTGGGACCAAAGGTGTGTG-CCACCACCACCCAAAAG  1048
      ||||||||||||||| ||||| || ||||||| ||||| ||| || ||| 
seq2  TGCCTCCCACGCACT-GGACC-AATGTGTGTGTCCACC-CCATCCTAAAA  1039

seq1  GTACATTTCTTGACATTAA  1067
      |||||||||||||||||||
seq2  GTACATTTCTTGACATTAA  1058

seq1: chr10_98923140_98924043
seq2: B6Ng01-124C12.g_72_971 (reverse)

seq1  GTGGCTCGTGTTATTTATACTTCTGTCTTCTTTACTGAACTAAAATCTCT  50
      ||| ||||||||||||| ||||||||| ||||||||||||| ||||||| 
seq2  GTGCCTCGTGTTATTTAAACTTCTGTC-TCTTTACTGAACT-AAATCTCC  48

seq1  TGAGGACTTGCCAGGAAGAAGTTTACATTCCCTATATCATTACTCTTTTG  100
      ||||||||||||||||||||||| | ||||||||||||||||||||||||
seq2  TGAGGACTTGCCAGGAAGAAGTTAAAATTCCCTATATCATTACTCTTTTG  98

seq1  TTTCTTTAAATGGAGGCTATAAGATGCCAATGGTTGTTGATCTGAAAGGT  150
       ||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  -TTCTTAAAATGGAGGCTATAAGATGCCAATGGTTGTTGATCTGAAAGGT  147

seq1  AAACTGTTCAATAATTTTAATAGGGTTTAACAAGATCTTAGACAAAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTTCAATAATTTTAATAGGGTTTAACAAGATCTTAGACAAAACTA  197

seq1  TCCTAATAAAATGAATTAATTTTATTTTGATTTGCTTTTTTTTCCTCTCT  250
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCCTAATAAAATGAATTAA-TTTATTTTGATTTGCTTTTTTTTCCTCTCT  246

seq1  CTCTTTTTGCATTGTGGTGAAAGCAAAAAGAGATTCCTTCTTTTCAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTGCATTGTGGTGAAAGCAAAAAGAGATTCCTTCTTTTCAGATT  296

seq1  TCTTGTTTTTAACCATTGGCCCTCGTGCCAAGGCTAGCCATTCCTGCGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTTTAACCATTGGCCCTCGTGCCAAGGCTAGCCATTCCTGCGCC  346

seq1  ATCCTCGGGACCCACAAAGTAAAAAAAGAGAACTCACTTCCTTTGGCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCGGGACCCACAAAGTAAAAAAAGAGAACTCACTTCCTTTGGCTTC  396

seq1  ACACCCACCCCGCCCCAATCCTGGGAAAGCCATTGTATTGTTTTCTTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCACCCCGCCCCAATCCTGGGAAAGCCATTGTATTGTTTTCTTGCA  446

seq1  GAACTGTTTGCTTTCAAAAGCGAAAAAGGAACTGAGGCTGCTATCTCGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTTTGCTTTCAAAAGCGAAAAAGGAACTGAGGCTGCTATCTCGGA  496

seq1  GTTCTTTACATCGAGGAAGTCACATGGGTGCATGGCTGAACAATGTTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTACATCGAGGAAGTCACATGGGTGCATGGCTGAACAATGTTTGC  546

seq1  TGGGGGGTTGTTGAAGATGTAAATTCTTTGCCCCTCGGAAGAGTCCTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGTTGTTGAAGATGTAAATTCTTTGCCCCTCGGAAGAGTCCTCTG  596

seq1  TGATCCGAACAGTCTTGAAGGAACCTCGCCCGACCTTGCGGCTTTTCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCGAACAGTCTTGAAGGAACCTCGCCCGACCTTGCGGCTTTTCATC  646

seq1  TTCAACCTCTCTCGTGCATAGTTTAAGACCCTAAGCCACATTGGCTACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACCTCTCTCGTGCATAGTTTAAGACCCTAAGCCACATTGGCTACTG  696

seq1  CTTCTTTTTTTAGAGACTCTCAGCAACCAGTGACTTTGATCTGCATCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTTTTAGAGACTCTCAGCAACCAGTGACTTTGATCTGCATCACA  746

seq1  CTTGAGACGATTTTCTGAAAGGTCAAAGGCGACTAGACTACCCCTTTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGACGATTTTCTGAAAGGTCAAAGGCGACTAGACTACCCCTTTGTC  796

seq1  ACTGTCTCTGAAGCACTCTTATCACCTTAGTGACTCCCCAGAGCCTCTCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTCTGAAGCACTCTTATCACCTTAGTGACTCCCCAGAGCCTCTCG  846

seq1  CCTTTGACCTTGTTCTTTAGCGCTTTTTTCCTTGGGGGAGGGGAGAGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGACCTTGTTCTTTAGCGCTTTTTTCCTTGGGGGAGGGGAGAGTGA  896

seq1  ATTC  904
      ||||
seq2  ATTC  900