BAC Information

Click to search

BAC

Clone NameB6Ng01-124M05
Chromosome10 (Build37)
Map Location 92,776,523 - 92,924,454
singlet/doubletdoublet
Overlap geneLOC100041854, Lta4h
Upstream geneLOC216229, LOC100041814, Nedd1, Gm872, 4930485B16Rik, EG667314, Pctk2, Elk3
Downstream geneHal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2, Vezt, Fgd6, Nr2c1, Ndufa12, EG215472, LOC100041955
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124M05.bB6Ng01-124M05.g
ACCDH927588DH927589
length9651,057
definitionDH927588|Mus musculus domesticus DNA, BAC clone: B6Ng01-124M05, 5' end.DH927589|Mus musculus domesticus DNA, BAC clone: B6Ng01-124M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,776,523 - 92,777,486)(92,923,392 - 92,924,454)
sequence
gaattcacctctttcaattgtagctttgaaaatacagcagtaaaatgtac
ccgtttaaaatgtctacttcagttgtgtgaagcctgcatgctttgttagg
aagcattcatcttgtaaaactgtaattctgtaaccagtaactaaccttca
ccctccaaccctaccctgccccaagcctttggtaagtctcattctacttc
ttgcttctatgaatgtgatgagatgcttcacggaaacagagccatacaat
atctgtctgtcctcgactggcttattccacttagcacaatgtccttcagg
ccaaggcaaagcatgtatagaggcacccactgttgatgggcatttgagtt
gtctccatctctgggctactgggaatactaagaatttatttacttttatt
tatttttgtgatgctaaggatcaagtcccaggctttgtgcatattagata
accatttgcttatctatgtacagggcttgatcccaagcccaagaatttat
atttttaaatggctgaaaacaaaacttttaaagagtaacattttgtaacc
tgtgcatgttacataaaattcgatttcagcatccataaagttttattggg
agatagacatgcttattcatttgtacattgtctgacattgtgtttgttct
gcattgggatggattaaaagctgtgacagagactatatggtctgtacaag
ccaaagtattttctttctggttctttgtagaaggcatttgtctaccactg
gtttagacaaatgaaattaagcatcctttttcattgttgttgttttgggt
gggtgttctgaattgctttatgtctcatgtttgctttggggtgagggagc
agttttgagacagggtttctctgtgtagcctctcgctttcctgggctata
aaccaggctagcctggaacccagagattcacctgcctctgcccttgtgag
tgctgggattaaagg
gaattctccttgcatttcagggccattcactgagtccccattcaagggca
ggttgtactctaggtgtttgggaagttaaatatgaataagccctatatac
ttccatttagatgggctgtttccaaattaaagaaatctgacttttaaaag
aagctgtattaatagcagcatataaatgagaatatatgtcgctctatgta
atacgaaacaatagagcgtgtttgtccacagggcctgcgcatgctgggaa
cttcccagcgtctctgagcattcttttacctggcactgactgaagagata
cggatgctgcttccctgacgtctgttcaggagtgagccactgaagcgcag
aggatttgggagatgtctcaaaggaaatttctataacgatctcttgattt
ctgcacgagacaaatacagatattaatggagtataaatcacacctcgcag
gatttgtattcagaacacgcacagggaacaacagcacgagcgctctccga
ggtctcatcggttcagcgtgagttcgagaaaccgcagctcacataaatct
gactctttgctgcttggatgccagcctgaggtttcctctcaccctcatac
taatgaacacatgatggggtgataatcagccaagtggcccacagtgtgtc
acgtactttgcatctgtgatcgtgttttctgtgacagtggggatgtggga
ggaccaatgtcatcaccctacctcagtggtgggtggcagcatgttgaccc
agcccagtgatgctgggtgacatgataagtcacgccaagggaaagaagct
tgtactgatttttgtagctgtagaatctaattttaaaaaaaaaaacctct
tcctctaagtaattctacacagtgattttctaagtatccatctgtgatag
actacaggagacaaaactgattctcatctagagtttcagaaactttgatg
atgagggagagcatgagctttgagccaggcagcccaacctggaccgaaac
cctgacccaccacctgtaccctaggtcaccaactgaccccaccctaccag
tttcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_92776523_92777486
seq2: B6Ng01-124M05.b_46_1010

seq1  GAATTCACCTCTTTCAATTGTAGCTTTGAAAATACAGCAGTAAAATGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTCTTTCAATTGTAGCTTTGAAAATACAGCAGTAAAATGTAC  50

seq1  CCGTTTAAAATGTCTACTTCAGTTGTGTGAAGCCTGCATGCTTTGTTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTTAAAATGTCTACTTCAGTTGTGTGAAGCCTGCATGCTTTGTTAGG  100

seq1  AAGCATTCATCTTGTAAAACTGTAATTCTGTAACCAGTAACTAACCTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTCATCTTGTAAAACTGTAATTCTGTAACCAGTAACTAACCTTCA  150

seq1  CCCTCCAACCCTACCCTGCCCCAAGCCTTTGGTAAGTCTCATTCTACTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAACCCTACCCTGCCCCAAGCCTTTGGTAAGTCTCATTCTACTTC  200

seq1  TTGCTTCTATGAATGTGATGAGATGCTTCACGGAAACAGAGCCATACAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCTATGAATGTGATGAGATGCTTCACGGAAACAGAGCCATACAAT  250

seq1  ATCTGTCTGTCCTCGACTGGCTTATTCCACTTAGCACAATGTCCTTCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCTGTCCTCGACTGGCTTATTCCACTTAGCACAATGTCCTTCAGG  300

seq1  CCAAGGCAAAGCATGTATAGAGGCACCCACTGTTGATGGGCATTTGAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCAAAGCATGTATAGAGGCACCCACTGTTGATGGGCATTTGAGTT  350

seq1  GTCTCCATCTCTGGGCTACTGGGAATACTAAGAATTTATTTACTTTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCATCTCTGGGCTACTGGGAATACTAAGAATTTATTTACTTTTATT  400

seq1  TATTTTTGTGATGCTAAGGATCAAGTCCCAGGCTTTGTGCATATTAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGTGATGCTAAGGATCAAGTCCCAGGCTTTGTGCATATTAGATA  450

seq1  ACCATTTGCTTATCTATGTACAGGGCTTGATCCCAAGCCCAAGAATTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTGCTTATCTATGTACAGGGCTTGATCCCAAGCCCAAGAATTTAT  500

seq1  ATTTTTAAATGGCTGAAAACAAAACTTTTAAAGAGTAACATTTTGTAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAATGGCTGAAAACAAAACTTTTAAAGAGTAACATTTTGTAACC  550

seq1  TGTGCATGTTACATAAAATTCGATTTCAGCATCCATAAAGTTTTATTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATGTTACATAAAATTCGATTTCAGCATCCATAAAGTTTTATTGGG  600

seq1  AGATAGACATGCTTATTCATTTGTACATTGTCTGACATTGTGTTTGTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGACATGCTTATTCATTTGTACATTGTCTGACATTGTGTTTGTTCT  650

seq1  GCATTGGGATGGATTAAAAGCTGTGACAGAGACTATATGGTCTGTACAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGGGATGGATTAAAAGCTGTGACAGAGACTATATGGTCTGTACAAG  700

seq1  CCAAAGTATTTTCTTTCTGGTTCTTTGTAGAAGGCATTTGTCTACCACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTATTTTCTTTCTGGTTCTTTGTAGAAGGCATTTGTCTACCACTG  750

seq1  GTTTAGACAAATGAAATTAAGCATCCTTTTTCATTGTTGTTGTTTTGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGACAAATGAAATTAAGCATCCTTTTTCATTGTTGTTGTTTTGGGT  800

seq1  GGGTGTTCTGAATTGCTTTATGTCTCATGTTTGCTTTGGGGTGAGGGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTCTGAATTGCTTTATGTCTCATGTTTGCTTTGGGGTGAGGGAGC  850

seq1  AGTTTTGAGACAGGGTTTCTCTGTGTAGCCTCTCGCTTTCCTGGGCTATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGAGACAGGGTTTCTCTGTGTAGCCTCTCGCTTTCCTGGGCTATA  900

seq1  AACCAGGCTAGCCTGGAACCCAGAGATCCACCTGCCTCTG-CCTTGTGAG  949
      ||||||||||||||||||||||||||| |||||||||||| |||||||||
seq2  AACCAGGCTAGCCTGGAACCCAGAGATTCACCTGCCTCTGCCCTTGTGAG  950

seq1  TGCTGGGATTAAAGG  964
      |||||||||||||||
seq2  TGCTGGGATTAAAGG  965

seq1: chr10_92923392_92924454
seq2: B6Ng01-124M05.g_66_1122 (reverse)

seq1  GAAGAAACTGGTAGGTTGAGGTCAAGTCGTTGACCTAGTGTACA-GTGGT  49
      ||||||||||||||| || |||| ||| | |||||||| ||||| |||||
seq2  GAAGAAACTGGTAGGGTGGGGTC-AGTTGGTGACCTAGGGTACAGGTGGT  49

seq1  GGGGTCAGGGTTTCGGTCCAGGTTGGGCTGCCTGGCTCCAAAGCTCTTGC  99
       |||||||||||||||||||||||||||||||||||| |||||||| |||
seq2  -GGGTCAGGGTTTCGGTCCAGGTTGGGCTGCCTGGCT-CAAAGCTCATGC  97

seq1  TCCTCCCTCATCATCAAAGTTTCTGAAACTCTAGGATGAAGAATCAGTTT  149
      | ||||||||||||||||||||||||||||||| |||| |||||||| ||
seq2  T-CTCCCTCATCATCAAAGTTTCTGAAACTCTA-GATG-AGAATCAG-TT  143

seq1  TTGTCTCCTGTAGTCTATCACAGATGGATACTTAGAAAATCACTGTGTAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTGTCTCCTGTAGTCTATCACAGATGGATACTTAGAAAATCACTGTGTA-  192

seq1  GAATTACTTAGAGGAAGAGGTTTTTTTTTTTAAAATTAGATTCTACAGCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTACTTAGAGGAAGAGGTTTTTTTTTTTAAAATTAGATTCTACAGCT  242

seq1  ACAAAAATCAGTACAAGCTTCTTTCCCTTGGCGTGACTTATCATGTCACC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATCAGTACAAGCTTCTTTCCCTTGGCGTGACTTATCATGTCACC  292

seq1  CAGCATCACTGGGCTGGGTC-ACATGCTGCCACCCACCACTGAGGTAGGG  348
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CAGCATCACTGGGCTGGGTCAACATGCTGCCACCCACCACTGAGGTAGGG  342

seq1  TGATGACATTGGTCCTCCCACATCCCCACTGTCACAGAAAACACGATCAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACATTGGTCCTCCCACATCCCCACTGTCACAGAAAACACGATCAC  392

seq1  AGATGCAAAGTACGTGACACACTGTGGGCCACTTGGCTGATTATCACCCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAAAGTACGTGACACACTGTGGGCCACTTGGCTGATTATCACCCC  442

seq1  ATCATGTGTTCATTAGTATGAGGGTGAGAGGAAACCTCAGGCTGGCATCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTGTTCATTAGTATGAGGGTGAGAGGAAACCTCAGGCTGGCATCC  492

seq1  AAGCAGCAAAGAGTCAGATTTATGTGAGCTGCGGTTTCTCGAACTCACGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCAAAGAGTCAGATTTATGTGAGCTGCGGTTTCTCGAACTCACGC  542

seq1  TGAACCGATGAGACCTCGGAGAGCGCTCGTGCTGTTGTTCCCTGTGCGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCGATGAGACCTCGGAGAGCGCTCGTGCTGTTGTTCCCTGTGCGTG  592

seq1  TTCTGAATACAAATCCTGCGAGGTGTGATTTATACTCCATTAATATCTGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAATACAAATCCTGCGAGGTGTGATTTATACTCCATTAATATCTGT  642

seq1  ATTTGTCTCGTGCAGAAATCAAGAGATCGTTATAGAAATTTCCTTTGAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCTCGTGCAGAAATCAAGAGATCGTTATAGAAATTTCCTTTGAGA  692

seq1  CATCTCCCAAATCCTCTGCGCTTCAGTGGCTCACTCCTGAACAGACGTCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCCAAATCCTCTGCGCTTCAGTGGCTCACTCCTGAACAGACGTCA  742

seq1  GGGAAGCAGCATCCGTATCTCTTCAGTCAGTGCCAGGTAAAAGAATGCTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCAGCATCCGTATCTCTTCAGTCAGTGCCAGGTAAAAGAATGCTC  792

seq1  AGAGACGCTGGGAAGTTCCCAGCATGCGCAGGCCCTGTGGACAAACACGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACGCTGGGAAGTTCCCAGCATGCGCAGGCCCTGTGGACAAACACGC  842

seq1  TCTATTGTTTCGTATTACATAGAGCGACATATATTCTCATTTATATGCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGTTTCGTATTACATAGAGCGACATATATTCTCATTTATATGCTG  892

seq1  CTATTAATACAGCTTCTTTTAAAAGTCAGATTTCTTTAATTTGGAAACAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAATACAGCTTCTTTTAAAAGTCAGATTTCTTTAATTTGGAAACAG  942

seq1  CCCATCTAAATGGAAGTATATAGGGCTTATTCATATTTAACTTCCCAAAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTAAATGGAAGTATATAGGGCTTATTCATATTTAACTTCCCAAAC  992

seq1  ACCTAGAGTACAACCTGCCCTTGAATGGGGACTCAGTGAATGGCCCTGAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGAGTACAACCTGCCCTTGAATGGGGACTCAGTGAATGGCCCTGAA  1042

seq1  ATGCAAGGAGAATTC  1063
      |||||||||||||||
seq2  ATGCAAGGAGAATTC  1057