BAC Information

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BAC

Clone NameB6Ng01-125C08
Chromosome10 (Build37)5 (Build37)
Map Location 61,622,121 - 61,622,661125,947,285 - 125,947,337
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1700021K02Rik, Adamts14, Prf1, EG237361, X99384, Nodal, Eif4ebp2, D830039M14Rik, Lrrc20, Npffr1, Ppa1, Sar1a, Tysnd1, Aifm2, H2afy2, LOC100039284, Col13a1, EG436164, EG432466, 2010107G23Rik, Neurog3
Downstream geneTspan15, Tacr2, Hk1, 2210417K05Rik, Hkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1, Cxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125C08.bB6Ng01-125C08.g
ACCDH927864DH927865
length53559
definitionDH927864|Mus musculus domesticus DNA, BAC clone: B6Ng01-125C08, 5' end.DH927865|Mus musculus domesticus DNA, BAC clone: B6Ng01-125C08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,622,121 - 61,622,661)(125,947,285 - 125,947,337)
sequence
caggccagacagagatacatagtaagaccctgtctagatagatagataga
tagatagatagatagatagatagatagaatcttaaggaattccagaaaaa
gatactatgaagcaaagttggagtttattaaaaccagatttttttcatat
gtatgggtgttttgcttacatgtctatctgtgtaccatgtacatgcctgg
tgccctcagaggccagaagagggcatcaggtcctctggaactgaagttat
agatggttgcaagctgccctgtggatgcttggtatcaaacccaggtcctc
tggaagtggatgctctgttcatggagaaatctcttcagccccttaaaaga
gacttttaaaaaaaatagatttatgcacagaggctaatagaaagacagac
aggtgctcaaggaaggacacatccgagagtgtaggtgtgggtgggcttcc
cagcagtctcttttgccttcacaatagctgtgtatgtatatgtgtatata
catatatatgtgtgtatatgtatgtttgttgtgtg
attcagagcacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_61622121_61622661
seq2: B6Ng01-125C08.b_51_591

seq1  GAATTCCAGGCCAGACAGAGATACATAGTAAGACCCTGTCTAGATAGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAGACAGAGATACATAGTAAGACCCTGTCTAGATAGATA  50

seq1  GATAGATAGATAGATAGATAGATAGATAGATAGAATCTTAAGGAATTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATAGATAGATAGATAGATAGATAGATAGAATCTTAAGGAATTCCA  100

seq1  GAAAAAGATACTATGAAGCAAAGTTGGAGTTTATTAAAACCAGATTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGATACTATGAAGCAAAGTTGGAGTTTATTAAAACCAGATTTTTT  150

seq1  TCATATGTATGGGTGTTTTGCTTACATGTCTATCTGTGTACCATGTACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGTATGGGTGTTTTGCTTACATGTCTATCTGTGTACCATGTACAT  200

seq1  GCCTGGTGCCCTCAGAGGCCAGAAGAGGGCATCAGGTCCTCTGGAACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTGCCCTCAGAGGCCAGAAGAGGGCATCAGGTCCTCTGGAACTGA  250

seq1  AGTTATAGATGGTTGCAAGCTGCCCTGTGGATGCTTGGTATCAAACCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATAGATGGTTGCAAGCTGCCCTGTGGATGCTTGGTATCAAACCCAG  300

seq1  GTCCTCTGGAAGTGGATGCTCTGTTCATGGAGAAATCTCTTCAGCCCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTGGAAGTGGATGCTCTGTTCATGGAGAAATCTCTTCAGCCCCTT  350

seq1  AAAAGAGACTTTTAAAAAAAATAGATTTATGCACAGAGGCTAATAGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGACTTTTAAAAAAAATAGATTTATGCACAGAGGCTAATAGAAAG  400

seq1  ACAGACAGGTGCTCAAGGAAGGACACATCCGAGAGTGTAGGTGTGGGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGGTGCTCAAGGAAGGACACATCCGAGAGTGTAGGTGTGGGTGG  450

seq1  GCTTCCCAGCAGTCTCTTTTGCCTTCACAATAGCTGTGTATGTATATGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCCAGCAGTCTCTTTTGCCTTCACAATAGCTGTGTATGTATATGTG  500

seq1  TATATACATATATATGTGTGTATATGTATGTTTGTTGTGTG  541
      |||||||||||||||||||||||||||||||||||||||||
seq2  TATATACATATATATGTGTGTATATGTATGTTTGTTGTGTG  541

seq1: chr5_125947285_125947337
seq2: B6Ng01-125C08.g_80_132 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACACACACACACTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACACACACTGT  50

seq1  GCT  53
      |||
seq2  GCT  53