BAC Information

Click to search

BAC

Clone NameB6Ng01-125H14
Chromosome10 (Build37)
Map Location 119,832,172 - 119,981,757
singlet/doubletdoublet
Overlap geneHmga2
Upstream geneGrip1, Helb, Irak3, Tmbim4, 1190005P17Rik
Downstream geneLOC100042902, Msrb3, LOC100043488, Lemd3, Wif1, LOC100042911, 4930505D03Rik, LOC100043498, Gns, Rassf3, LOC100043500
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125H14.bB6Ng01-125H14.g
ACCDH928102DH928103
length1,0881,076
definitionDH928102|Mus musculus domesticus DNA, BAC clone: B6Ng01-125H14, 5' end.DH928103|Mus musculus domesticus DNA, BAC clone: B6Ng01-125H14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,980,662 - 119,981,757)(119,832,172 - 119,833,246)
sequence
gaattccagaacaaatggggctacacagagagagaaactttgtcttaaaa
cctatatgcaaaccactatccccctcacatacatgaaagaaagaaaagaa
gaaaacgaaagaaaggaagaaaggaaagaagcagagagagagagagagag
agagagagagagagagagagagagagagagaacaatttgtaaatggctat
agttcctactagtaccatgagtttctaagaagctgtcctgtgaatatttc
cctgttagttcttctggcatttctgaagctttgaagttatagcagactca
ggctgctcaccacgatcattagtgttattcagagatgatacagcagcaac
aatgtatctacctggggagagttccagtcagacctgaggagcccgcattc
tgattccctcttccctccacctcctttcctctcttctcttactctagtga
accaaaagaagccaggaatctgaacgtttccaaatgcgatttttaaaatt
gttcctcgaagctctggagtgtacattgcgcatgtacactcccaagcaca
catattcttatactgctgaaccattgctcaatgctaggctgagattcaaa
gcagtgttttgtttctttagaccagtggttctcaaccttcctaacacagt
gacccttcaacctcatattgcggtgacccctaaccataaaattactttca
ttgctacttcacaactgtaatgttactgctgctatgaatcctaattgttt
tttttttttaatttattatatgtaagtacacctgaagctgtcttcagaca
caccagaagagggcatcagatctcattacagatggttttgagccaccatg
tggttgctgggatttgaactcaggacctctgaaagagcagtcagtgctct
taaccactgaacatctctccagtgccgcctcccccccacccccatgtgtt
ttctgatggtcttaggctacccctgtgagagagttgttgagcctcctgcc
ttcccgaaaggtcacaacccacaggttgagaccactgctttattgagcag
tgttttatttggttcttggctatgaactgggcacttta
gaattctttgcagacgtggggtaggtagtatgacaatgttaatccaccca
tggatgaacagcagatctgaaaatcctctaatgaggcagctgtattttta
tttactattattattaattattaataatatagctgttttaccattaacat
catgtgtatgacctgtgttttagtgttatcagtggaataactacttttta
tttttttaattttttgagagagaggtctctagcccagtctggccttggat
tctctctgtagaagaagaggatgggacttgagcctttggctttcctgcct
ctgccccctgagtactgagtacacttccatctcctgagtaccaagtatac
taccaactcttgagtactgagcacactaccacaccagggtcataggcatc
ttactcctcactagtttaatgatgattttaccttccagggttaagaaaat
taaccctggaattaacagatgatggagaatgactggtttatgcttcaaaa
taacatttttggggtaaacattacatttctattttatttcacgtgcagag
tttatgcacccctggcccttcctccttgccctcctcccggggaagggagt
cagaccatctgctctcacgtctgtggagttcttccgagttgctagatcgc
tttgccacattgcttgatgtgtttatcagtgtaagtgacacagatgggct
actgttctgttctggaagccagtctatatttttatagtcttttctgtctg
ctgtttgcgggacctaaccaaatctctctctctgtggagtaaagtttcca
aagggacatggctgcagagtttatgaggtctgaaaaatacttttatctga
tagcatttggttccagtagaaaaaattctgttagatgaatcaagaactag
ctctacctctccttttccatcctgttaagaaatttatcaacagcggtact
cttcttcttccacagaattggagtatatatattggtaatatatagatacc
ttgtatttattatggacgctttactatttatctcctattattcctcctta
tacatcaccaaaaatatgtatacata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_119980662_119981757
seq2: B6Ng01-125H14.b_50_1137 (reverse)

seq1  TAAAGTGCCCAGTCAATTAGGCAAAAGAACCAAAATAGACACTTGCTCCA  50
      |||||||||||||  | ||| |  ||||||||||  | |||| ||||| |
seq2  TAAAGTGCCCAGTTCA-TAGCC--AAGAACCAAATAAAACAC-TGCTCAA  46

seq1  TAAAGCAGTGGTTCTCAACCTGTGGGTTGTGACCTTTTCGGGGAGGGCAG  100
      ||||||||||| |||||||||||||||||||||||||   |||| |||| 
seq2  TAAAGCAGTGG-TCTCAACCTGTGGGTTGTGACCTTT--CGGGAAGGCA-  92

seq1  GGGGGCTCAACAACTCTCTCACAGGGGTAGCCTAAGACCATCAGAAAACA  150
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTCAACAACTCTCTCACAGGGGTAGCCTAAGACCATCAGAAAACA  142

seq1  CATGGGGGTGGGGGGGAGGCGGCACTGGAGAGATGGTTCAGTGGTTAAGA  200
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CATGGGGGTGGGGGGGAGGCGGCACTGGAGAGAT-GTTCAGTGGTTAAGA  191

seq1  GCACTGACTGCTCTTTCAGAGGTCCTGAGTTCAAATCCCAGCAACCACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGACTGCTCTTTCAGAGGTCCTGAGTTCAAATCCCAGCAACCACAT  241

seq1  GGTGGCTCAAAACCATCTGTAATGAGATCTGATGCCCTCTTCTGGTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTCAAAACCATCTGTAATGAGATCTGATGCCCTCTTCTGGTGTGT  291

seq1  CTGAAGACAGCTTCAGGTGTACTTACATATAATAAATT-AAAAAAAAAAA  349
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTGAAGACAGCTTCAGGTGTACTTACATATAATAAATTAAAAAAAAAAAA  341

seq1  CAATTAGGATTCATAGCAGCAGTAACATTACAGTTGTGAAGTAGCAATGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAGGATTCATAGCAGCAGTAACATTACAGTTGTGAAGTAGCAATGA  391

seq1  AAGTAATTTTATGGTTAGGGGTCACCGCAATATGAGGTTGAAGGGTCACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATTTTATGGTTAGGGGTCACCGCAATATGAGGTTGAAGGGTCACT  441

seq1  GTGTTAGGAAGGTTGAGAACCACTGGTCTAAAGAAACAAAACACTGCTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGGAAGGTTGAGAACCACTGGTCTAAAGAAACAAAACACTGCTTT  491

seq1  GAATCTCAGCCTAGCATTGAGCAATGGTTCAGCAGTATAAGAATATGTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCAGCCTAGCATTGAGCAATGGTTCAGCAGTATAAGAATATGTGT  541

seq1  GCTTGGGAGTGTACATGCGCAATGTACACTCCAGAGCTTCGAGGAACAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGAGTGTACATGCGCAATGTACACTCCAGAGCTTCGAGGAACAAT  591

seq1  TTTAAAAATCGCATTTGGAAACGTTCAGATTCCTGGCTTCTTTTGGTTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATCGCATTTGGAAACGTTCAGATTCCTGGCTTCTTTTGGTTCA  641

seq1  CTAGAGTAAGAGAAGAGAGGAAAGGAGGTGGAGGGAAGAGGGAATCAGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGTAAGAGAAGAGAGGAAAGGAGGTGGAGGGAAGAGGGAATCAGAA  691

seq1  TGCGGGCTCCTCAGGTCTGACTGGAACTCTCCCCAGGTAGATACATTGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGGCTCCTCAGGTCTGACTGGAACTCTCCCCAGGTAGATACATTGTT  741

seq1  GCTGCTGTATCATCTCTGAATAACACTAATGATCGTGGTGAGCAGCCTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGTATCATCTCTGAATAACACTAATGATCGTGGTGAGCAGCCTGA  791

seq1  GTCTGCTATAACTTCAAAGCTTCAGAAATGCCAGAAGAACTAACAGGGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCTATAACTTCAAAGCTTCAGAAATGCCAGAAGAACTAACAGGGAA  841

seq1  ATATTCACAGGACAGCTTCTTAGAAACTCATGGTACTAGTAGGAACTATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCACAGGACAGCTTCTTAGAAACTCATGGTACTAGTAGGAACTATA  891

seq1  GCCATTTACAAATTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTACAAATTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  941

seq1  TCTCTCTCTCTCTCTGCTTCTTTCCTTTCTTCCTTTCTTTCGTTTTCTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTGCTTCTTTCCTTTCTTCCTTTCTTTCGTTTTCTTC  991

seq1  TTTTCTTTCTTTCATGTATGTGAGGGGGATAGTGGTTTGCATATAGGTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTCTTTCATGTATGTGAGGGGGATAGTGGTTTGCATATAGGTTT  1041

seq1  TAAGACAAAGTTTCTCTCTCTGTGTAGCCCCATTTGTTCTGGAATTC  1096
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACAAAGTTTCTCTCTCTGTGTAGCCCCATTTGTTCTGGAATTC  1088

seq1: chr10_119832172_119833246
seq2: B6Ng01-125H14.g_67_1142

seq1  GAATTCTTTGCAGACGTGGGGTAGGTAGTATGACAATGTTAATCCACCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCAGACGTGGGGTAGGTAGTATGACAATGTTAATCCACCCA  50

seq1  TGGATGAACAGCAGATCTGAAAATCCTCTAATGAGGCAGCTGTATTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGAACAGCAGATCTGAAAATCCTCTAATGAGGCAGCTGTATTTTTA  100

seq1  TTTACTATTATTATTAATTATTAATAATATAGCTGTTTTACCATTAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTATTATTATTAATTATTAATAATATAGCTGTTTTACCATTAACAT  150

seq1  CATGTGTATGACCTGTGTTTTAGTGTTATCAGTGGAATAACTACTTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTATGACCTGTGTTTTAGTGTTATCAGTGGAATAACTACTTTTTA  200

seq1  TTTTTTTAATTTTTTGAGAGAGAGGTCTCTAGCCCAGTCTGGCCTTGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAATTTTTTGAGAGAGAGGTCTCTAGCCCAGTCTGGCCTTGGAT  250

seq1  TCTCTCTGTAGAAGAAGAGGATGGGACTTGAGCCTTTGGCTTTCCTGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGTAGAAGAAGAGGATGGGACTTGAGCCTTTGGCTTTCCTGCCT  300

seq1  CTGCCCCCTGAGTACTGAGTACACTTCCATCTCCTGAGTACCAAGTATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCCTGAGTACTGAGTACACTTCCATCTCCTGAGTACCAAGTATAC  350

seq1  TACCAACTCTTGAGTACTGAGCACACTACCACACCAGGGTCATAGGCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACTCTTGAGTACTGAGCACACTACCACACCAGGGTCATAGGCATC  400

seq1  TTACTCCTCACTAGTTTAATGATGATTTTACCTTCCAGGGTTAAGAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCCTCACTAGTTTAATGATGATTTTACCTTCCAGGGTTAAGAAAAT  450

seq1  TAACCCTGGAATTAACAGATGATGGAGAATGACTGGTTTATGCTTCAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTGGAATTAACAGATGATGGAGAATGACTGGTTTATGCTTCAAAA  500

seq1  TAACATTTTTGGGGTAAACATTACATTTCTATTTTATTTCACGTGCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTTTGGGGTAAACATTACATTTCTATTTTATTTCACGTGCAGAG  550

seq1  TTTATGCACCCCTGGCCCTTCCTCCTTGCCCTCCTCCCGGGGAAGGGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCACCCCTGGCCCTTCCTCCTTGCCCTCCTCCCGGGGAAGGGAGT  600

seq1  CAGACCATCTGCTCTCACGTCTGTGGAGTTCTTCCGAGTTGCTAGATCGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCATCTGCTCTCACGTCTGTGGAGTTCTTCCGAGTTGCTAGATCGC  650

seq1  -TTGCCACATTGCTTGATGTGTTTATCAGTGTAAGTGACACAGATGGGCT  699
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCACATTGCTTGATGTGTTTATCAGTGTAAGTGACACAGATGGGCT  700

seq1  ACTGTTCTGTTCTGGAAGCCAGTCTATATTTTTATAGTCTTTTCTGTCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCTGTTCTGGAAGCCAGTCTATATTTTTATAGTCTTTTCTGTCTG  750

seq1  CTGTTTGCGGGACCTAACCAAATCTCTCTCTCTGTGGAGTAAAGTTTCCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGCGGGACCTAACCAAATCTCTCTCTCTGTGGAGTAAAGTTTCCA  800

seq1  AAGGGACATGGCTGCAGAGTTTATGAGGTCTGAAAAATACTTTTATCTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACATGGCTGCAGAGTTTATGAGGTCTGAAAAATACTTTTATCTGA  850

seq1  TAGCAATTGGTTCCAGTAG-AAAAATTCTGTTAGATGAATCAAG-ACTAG  897
      ||||| ||||||||||||| |||||||||||||||||||||||| |||||
seq2  TAGCATTTGGTTCCAGTAGAAAAAATTCTGTTAGATGAATCAAGAACTAG  900

seq1  CTCTACCTCTCCCTTTTCCATCCTGTTAAGAAATTTATC-ACAGCGGTAC  946
      |||||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  CTCTACCTCT-CCTTTTCCATCCTGTTAAGAAATTTATCAACAGCGGTAC  949

seq1  TCTTCTTCTTCCACAGAAATTGAGTATATATTAATGGTAATATATAGATA  996
      |||||||||||||||||| | ||||||||| || ||||||||||||||||
seq2  TCTTCTTCTTCCACAGAATTGGAGTATATA-TATTGGTAATATATAGATA  998

seq1  ACTTGTATTTATATATGAACGCTTACATATTTATCATCTATTATGTCCT-  1045
       ||||||||||| |||| ||||||   ||||||||  ||||||| |||| 
seq2  CCTTGTATTTAT-TATGGACGCTTTACTATTTATCTCCTATTAT-TCCTC  1046

seq1  CATATACATACACATAAATATGTATACATA  1075
      | |||||||   || |||||||||||||||
seq2  CTTATACATCACCAAAAATATGTATACATA  1076