BAC Information

Click to search

BAC

Clone NameB6Ng01-125H24
Chromosome2 (Build37)10 (Build37)
Map Location 63,498,526 - 63,499,727104,053,903 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGca, Kcnh7, EG667257
Downstream geneFign, LOC620544
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125H24.bB6Ng01-125H24.g
ACCDH928118DH928119
length1,179936
definitionDH928118|Mus musculus domesticus DNA, BAC clone: B6Ng01-125H24, 5' end.DH928119|Mus musculus domesticus DNA, BAC clone: B6Ng01-125H24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(63,498,526 - 63,499,727)(104,053,903 - 104,054,363)
sequence
gaattcattttagagcaagtagcatgtagacataaagagacaaaaaaaaa
tctatgaaggaccaaaggtactaaagattattgtttttccatagtgaaaa
tttaaaaaagagagatttcacactgaaaatttctaggtattaaaaatcaa
atgctaaaagtttacagactccttttgggtcacaagagttaacacatgtc
tgtagttctgccaaaaaattatataactatctaaaacactaagtttgaga
aggctttcctaatccatgtaatttgacaagactcaaacatttccagactt
ttcagatgatattgttttgcatttctacatcatatctaaaagaatatccc
cccattaatttgtatgaataactatgctctgtaattttttgttagtattt
acagggggaaatcccctttttcttggctaaagtttctacgactgaatacc
cttggatagggtgatttaagccacactggtacctgcaagttctagaagat
aagagcttgaggtcaggggaccaacatgctggttgcaggctccttttctg
gtttttggctaacattcctcttgtagtctcacatatcacacacagagaaa
agcttctgtagtatagaaggaccttaattcaatacataactggtacatgc
ttataaattatctttcttaatttccaatactatcagactagcggttagga
tttcagcatatgaattttgattcaatcatctaattaaaaatatgactaaa
tcttattttcagagacaacaagaaattattttgacactatcttaagcatc
tctgagagaagaactcaatagcagtgttggcttcatgtttctccaaaggg
acagattggtataaactagatccttagaaccacagaattacaaagtcata
aatggatggtagaggactttattcaatctggcacatttcactaccccaac
tgctatgaagctttcattcacacatcatcctggcataagtactctccgag
aaaatggtccctttctgtcagtttgtctacaccatttcagtttccctagc
atctcgtcaatcattagacaaagtacctggtcataaccaactcttgctgc
cttccatatttaagacccatagtagtagatctatgcctattcaatattgc
ccaaatgattctgggaatttgaccttaca
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcaacagccttaatcatcagagaaatgtgaatcaaaacaaccctgagat
tccacctcacactagtcagaatggctagatcaaaaattcaggtgacagca
aatgctggcgaggatgtggagaaagaggaacactcctccattgttggtgg
gattgcaagcttgtacaaccactctggaaatcagtctggcagttcctcag
aaaattggaaatagtactaccggaggatccagcaatacctcttctgggca
tatatccagaagttgtcccaaccgataagaaggacacatgctccactatt
ttcatagctgccttatttatagtagccagaagctggaaagaacccagata
cccctcaacagaggaatgaatacaaaaaattgtagtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggttggacctggagggcatcatcctgagtgaggtaacacaatcacaaa
agaactcaaatgatatgtactcactgataagtggatattagcccagaaac
ttagtatagcaagatataagatacaatttgcaaaacacatgaaactgaag
aagaacgaagaccaaagtgtggacactttgccccttcttagaattggaaa
caatcacccatggaaggagttacaacgtttggatatgagagaaaaggata
gaccatctagcgactgccttatccagggatccatcccataattagcctcc
aaacgatgacaccattgcctacactagcaagcttttactgcaaggacctg
aaatagctgtctcttgtgagactatgccggggcctagcaaacacagaagt
ggatgctcacagtcagctattggatggatcacaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_63498526_63499727
seq2: B6Ng01-125H24.b_50_1228 (reverse)

seq1  TGTAAGGTCAATATTCCACAGAACTCATCTGGCAAATATTGAATTAGGGC  50
      ||||||||||| ||||| ||||| |||| |||  ||||||||||   |||
seq2  TGTAAGGTCAA-ATTCC-CAGAA-TCATTTGGGCAATATTGAAT--AGGC  45

seq1  ATAGGATCTTACTACTATGTGGTCTTTTAAATATGGGAGGCAGGCAAAGA  100
      ||| |||| |||||||||| ||||  |||||||||| ||||||   ||||
seq2  ATA-GATC-TACTACTATG-GGTC--TTAAATATGGAAGGCAG--CAAGA  88

seq1  GTTGGTTATGGACAAGGTACTTTGTCTAAAATGATTGACGAGGATGCTAG  150
      ||||||||| ||| |||||||||||||  |||||||||||| ||||||||
seq2  GTTGGTTAT-GACCAGGTACTTTGTCT--AATGATTGACGA-GATGCTAG  134

seq1  GGAAACTGAAAATGGTTGTAAGACAAACTGACAGAAAGGTGACCATTTTC  200
      |||||||| |||||| ||| ||||||||||||||||||| ||||||||||
seq2  GGAAACTG-AAATGG-TGT-AGACAAACTGACAGAAAGG-GACCATTTTC  180

seq1  TCGGGAGAGTACTTATGCCAGGATGATGTGTGAAATGAAAGCTTCATAGC  250
      || ||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TC-GGAGAGTACTTATGCCAGGATGATGTGTG-AATGAAAGCTTCATAGC  228

seq1  AGTTGGGGTAGTGAAATGTTGCCAGATTGAATAAAGTCCTCTACCATCCA  300
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGTTGGGGTAGTGAAATG-TGCCAGATTGAATAAAGTCCTCTACCATCCA  277

seq1  TTTATGACTTTGTAATTCTGTGGTTCTAAGGATCTAGTTTATACCAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGACTTTGTAATTCTGTGGTTCTAAGGATCTAGTTTATACCAATCT  327

seq1  GTCCCTTTGGAGAAACATGAAGCCAACACTGCTATTGAGTTCTTCTCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTTGGAGAAACATGAAGCCAACACTGCTATTGAGTTCTTCTCTCA  377

seq1  GAGATGCTTAAGATAGTGTCAAAATAATTTCTTGTTGTCTCTGAAAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCTTAAGATAGTGTCAAAATAATTTCTTGTTGTCTCTGAAAATAA  427

seq1  GATTTAGTCATATTTTTAATTAGATGATTGAATCAAAATTCATATGCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAGTCATATTTTTAATTAGATGATTGAATCAAAATTCATATGCTGA  477

seq1  AATCCTAACCGCTAGTCTGATAGTATTGGAAATTAAGAAAGATAATTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTAACCGCTAGTCTGATAGTATTGGAAATTAAGAAAGATAATTTAT  527

seq1  AAGCATGTACCAGTTATGTATTGAATTAAGGTCCTTCTATACTACAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGTACCAGTTATGTATTGAATTAAGGTCCTTCTATACTACAGAAG  577

seq1  CTTTTCTCTGTGTGTGATATGTGAGACTACAAGAGGAATGTTAGCCAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTCTGTGTGTGATATGTGAGACTACAAGAGGAATGTTAGCCAAAA  627

seq1  ACCAGAAAAGGAGCCTGCAACCAGCATGTTGGTCCCCTGACCTCAAGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAAAAGGAGCCTGCAACCAGCATGTTGGTCCCCTGACCTCAAGCTC  677

seq1  TTATCTTCTAGAACTTGCAGGTACCAGTGTGGCTTAAATCACCCTATCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTCTAGAACTTGCAGGTACCAGTGTGGCTTAAATCACCCTATCCA  727

seq1  AGGGTATTCAGTCGTAGAAACTTTAGCCAAGAAAAAGGGGATTTCCCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTATTCAGTCGTAGAAACTTTAGCCAAGAAAAAGGGGATTTCCCCCT  777

seq1  GTAAATACTAACAAAAAATTACAGAGCATAGTTATTCATACAAATTAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATACTAACAAAAAATTACAGAGCATAGTTATTCATACAAATTAATG  827

seq1  GGGGGATATTCTTTTAGATATGATGTAGAAATGCAAAACAATATCATCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGATATTCTTTTAGATATGATGTAGAAATGCAAAACAATATCATCTG  877

seq1  AAAAGTCTGGAAATGTTTGAGTCTTGTCAAATTACATGGATTAGGAAAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCTGGAAATGTTTGAGTCTTGTCAAATTACATGGATTAGGAAAGC  927

seq1  CTTCTCAAACTTAGTGTTTTAGATAGTTATATAATTTTTTGGCAGAACTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAAACTTAGTGTTTTAGATAGTTATATAATTTTTTGGCAGAACTA  977

seq1  CAGACATGTGTTAACTCTTGTGACCCAAAAGGAGTCTGTAAACTTTTAGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATGTGTTAACTCTTGTGACCCAAAAGGAGTCTGTAAACTTTTAGC  1027

seq1  ATTTGATTTTTAATACCTAGAAATTTTCAGTGTGAAATCTCTCTTTTTTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATTTTTAATACCTAGAAATTTTCAGTGTGAAATCTCTCTTTTTTA  1077

seq1  AATTTTCACTATGGAAAAACAATAATCTTTAGTACCTTTGGTCCTTCATA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCACTATGGAAAAACAATAATCTTTAGTACCTTTGGTCCTTCATA  1127

seq1  GATTTTTTTTTGTCTCTTTATGTCTACATGCTACTTGCTCTAAAATGAAT  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTTTTGTCTCTTTATGTCTACATGCTACTTGCTCTAAAATGAAT  1177

seq1  TC  1202
      ||
seq2  TC  1179

seq1: chr10_104053903_104054363
seq2: B6Ng01-125H24.g_65_535 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCAC-ATTTTCTGT  39
      ||||||||          ||||||||||||||||||| || ||||| |||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACTACAATTTTTTGT  50

seq1  ATCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTAT  89
      ||  ||||||||||||||||| ||||||||||||||||||| ||||||| 
seq2  ATTCATTCCTCTGTTGAGGGGTATCTGGGTTCTTTCCAGCTTCTGGCTAC  100

seq1  TATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGG  139
      |||||||||||| |||||||| |||||||||||||||||||||||| |||
seq2  TATAAATAAGGCAGCTATGAAAATAGTGGAGCATGTGTCCTTCTTATCGG  150

seq1  TTGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCC  189
      ||||| || |||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGACAACTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCC  200

seq1  GGTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAG  239
      ||||||||||| ||||||||||||| |||| ||||||| |||||||||||
seq2  GGTAGTACTATTTCCAATTTTCTGAGGAACTGCCAGACTGATTTCCAGAG  250

seq1  TGGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTT  289
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTACAAGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTT  300

seq1  CTCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCC  339
      |||||||||||||||||||| ||||||||||||||||||||||| |||||
seq2  CTCCACATCCTCGCCAGCATTTGCTGTCACCTGAATTTTTGATC-TAGCC  349

seq1  ATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTC  389
      ||||||||| ||||||||||||||||||||||||||||||||  ||||||
seq2  ATTCTGACTAGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTCACATTTC  399

seq1  CCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTC  439
       ||||||||||||| ||||||||||||||||||||||||||| |||||||
seq2  TCTGATGATTAAGGCTGTTGAACATTTTTTCAGGTGCTTCTCAGCCATTC  449

seq1  GGTATTCCTCAGGTGAGAATTC  461
      ||||||||||||||||||||||
seq2  GGTATTCCTCAGGTGAGAATTC  471