BAC Information

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BAC

Clone NameB6Ng01-126I03
Chromosome10 (Build37)
Map Location 79,353,142 - 79,495,871
singlet/doubletdoublet
Overlap geneCfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1
Upstream geneGA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765, AJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2
Downstream genePolr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126I03.bB6Ng01-126I03.g
ACCDH928862DH928863
length1,061370
definitionDH928862|Mus musculus domesticus DNA, BAC clone: B6Ng01-126I03, 5' end.DH928863|Mus musculus domesticus DNA, BAC clone: B6Ng01-126I03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,494,810 - 79,495,871)(79,353,142 - 79,353,515)
sequence
gaattctcttgactcctgtccttgggataacaagctggcttctcctttcc
agcatctctagccttcaattcaccacgtagctgaggaccatgaactttgg
atctgtgctgccccatcccccaaacctcacctcgtgtccgtgtccggtga
gctgggatgacaggcgtgccccaccccagcttctcaaggacctggggatt
cccctgggtcaggcaagcacagtccttgctgcaaagtggcatttcttctg
agacctgcacactgagttgatgtggggagtgtcctagggccacctatgtg
tgaggacaggggctgagaagggtggcaggtgctactcgcccctcccgagg
ctgaagctctgcaggacagggtttcttccccagaactacaaaaaataaat
gaaatgtagtttgtaaacaaagaacaaaacccacaaaaagactggcatgg
tggcgacatgcctttgatcctagcactcaggaggcagagacaagccagcc
tggtctacagaatgagttccaggacagccaaagctatgtagagagatcct
gtctcaaaaagccaaaaactaaaaataaataaaatgtagttggcagactg
ggtatagcgtacagacagctgtcatccccacacttggtttgctgaacctg
gaggatgctgttaatcaagattagcctggactacaggctagtcctccaga
cgttgaaggggcttgctgccagcctgacaacccacatttaatcctcagag
gcagcatagtgggaggagagaactgtaagctgtcctctgacctctccagc
gtctgtacaaacagcatacactacaaataataaaaacaagagacagcgac
atccctgcatcacgcagccaggaaatcacagaggaacctagagccctggg
tcaaactcaagaccttaaactactaaaccataaaattaaagcaagaacct
gagcctgggctcagtggataaagcacttgcatgcgtggaaccctgtcgtc
ctagcactctggagtagagcaggagggaggattggttagtttaagtcttc
tttggccacac
acaggaaatgaaacctcatggcaacactctgcttgctgaggtgtgagacc
ccacagacacaggaatgaggacaaaggagttaagtgcccttcccccactg
tcaagcaaccttctctccaaattgaaggcagaaagaggagggagagatga
tggggtggagggtgttactaaccgacctcctgctgctctggttttaacag
acaccatgacagacacatggctggaaggatactcactgggccaggacaac
aggtggtccatcctctgctctcgttgtgccttgtgtatgcctaccttgag
agtgggcactggtcagggtgccatgcaggagggagaggagggtttgccct
tgccccctgcacctcacagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_79494810_79495871
seq2: B6Ng01-126I03.b_48_1108 (reverse)

seq1  GTGTGGCCAAAGAAGACCTTAAACT-ACCAATCCTCCCTCCTGCCTCTAC  49
      |||||||||||||||| |||||||| ||||||||||||||||| ||||| 
seq2  GTGTGGCCAAAGAAGA-CTTAAACTAACCAATCCTCCCTCCTG-CTCTA-  47

seq1  CTCCAGAGTGCTAGGACGACAGGGTTCCACGCATGCAAGTGCTTTATCCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAGTGCTAGGACGACAGGGTTCCACGCATGCAAGTGCTTTATCCA  97

seq1  CTGAGCCCAGGCTCAGGTTCTTGCTTTAATTTTATGGTTTAGTAGTTTAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCCAGGCTCAGGTTCTTGCTTTAATTTTATGGTTTAGTAGTTTAA  147

seq1  GGTCTTGAGTTTGA-CCAGGGCTCTAGGTTCCTCTGTGATTTCCTGGCTG  198
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGTCTTGAGTTTGACCCAGGGCTCTAGGTTCCTCTGTGATTTCCTGGCTG  197

seq1  CGTGATGCAGGGATGTCGCTGTCTCTTGTTTTTATTATTTGTAGTGTATG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGATGCAGGGATGTCGCTGTCTCTTGTTTTTATTATTTGTAGTGTATG  247

seq1  CTGTTTGTACAGACGCTGGAGAGGTCAGAGGACAGCTTACAGTTCTCTCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGTACAGACGCTGGAGAGGTCAGAGGACAGCTTACAGTTCTCTCC  297

seq1  TCCCACTATGCTGCCTCTGAGGATTAAATGTGGGTTGTCAGGCTGGCAGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTATGCTGCCTCTGAGGATTAAATGTGGGTTGTCAGGCTGGCAGC  347

seq1  AAGCCCCTTCAACGTCTGGAGGACTAGCCTGTAGTCCAGGCTAATCTTGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCTTCAACGTCTGGAGGACTAGCCTGTAGTCCAGGCTAATCTTGA  397

seq1  TTAACAGCATCCTCCAGGTTCAGCAAACCAAGTGTGGGGATGACAGCTGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGCATCCTCCAGGTTCAGCAAACCAAGTGTGGGGATGACAGCTGT  447

seq1  CTGTACGCTATACCCAGTCTGCCAACTACATTTTATTTATTTTTAGTTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACGCTATACCCAGTCTGCCAACTACATTTTATTTATTTTTAGTTTT  497

seq1  TGGCTTTTTGAGACAGGATCTCTCTACATAGCTTTGGCTGTCCTGGAACT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTTGAGACAGGATCTCTCTACATAGCTTTGGCTGTCCTGGAACT  547

seq1  CATTCTGTAGACCAGGCTGGCTTGTCTCTGCCTCCTGAGTGCTAGGATCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGTAGACCAGGCTGGCTTGTCTCTGCCTCCTGAGTGCTAGGATCA  597

seq1  AAGGCATGTCGCCACCATGCCAGTCTTTTTGTGGGTTTTGTTCTTTGTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATGTCGCCACCATGCCAGTCTTTTTGTGGGTTTTGTTCTTTGTTT  647

seq1  ACAAACTACATTTCATTTATTTTTTGTAGTTCTGGGGAAGAAACCCTGTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTACATTTCATTTATTTTTTGTAGTTCTGGGGAAGAAACCCTGTC  697

seq1  CTGCAGAGCTTCAGCCTCGGGAGGGGCGAGTAGCACCTGCCACCCTTCTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAGCTTCAGCCTCGGGAGGGGCGAGTAGCACCTGCCACCCTTCTC  747

seq1  AGCCCCTGTCCTCACACATAGGTGGCCCTAGGACACTCCCCACATCAACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTGTCCTCACACATAGGTGGCCCTAGGACACTCCCCACATCAACT  797

seq1  CAGTGTGCAGGTCTCAGAAGAAATGCCACTTTGCAGCAAGGACTGTGCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGCAGGTCTCAGAAGAAATGCCACTTTGCAGCAAGGACTGTGCTT  847

seq1  GCCTGACCCAGGGGAATCCCCAGGTCCTTGAGAAGCTGGGGTGGGGCACG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGACCCAGGGGAATCCCCAGGTCCTTGAGAAGCTGGGGTGGGGCACG  897

seq1  CCTGTCATCCCAGCTCACCGGACACGGACACGAGGTGAGGTTTGGGGGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCATCCCAGCTCACCGGACACGGACACGAGGTGAGGTTTGGGGGAT  947

seq1  GGGGCAGCACAGATCCAAAGTTCATGGTCCTCAGCTACGTGGTGAATTGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGCACAGATCCAAAGTTCATGGTCCTCAGCTACGTGGTGAATTGA  997

seq1  AGGCTAGAGATGCTGGAAAGGAGAAGCCAGCTTGTTATCCCAAGGACAGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGAGATGCTGGAAAGGAGAAGCCAGCTTGTTATCCCAAGGACAGG  1047

seq1  AGTCAAGAGAATTC  1062
      ||||||||||||||
seq2  AGTCAAGAGAATTC  1061

seq1: chr10_79353142_79353515
seq2: B6Ng01-126I03.g_66_440

seq1  GAATTCACAGGAAATGAAACCTCATGGCAACACTCTGCTTGCTGAGGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGAAATGAAACCTCATGGCAACACTCTGCTTGCTGAGGTGT  50

seq1  GAGACCCCACAGACACAGGAATGAGGACAAAGGAGTTAAGTGCCCTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCCACAGACACAGGAATGAGGACAAAGGAGTTAAGTGCCCTTCCC  100

seq1  CCACTGTCAAGCAACCTTCTCTCCAAATTGAAGGCAGAAAGAGGAGGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTCAAGCAACCTTCTCTCCAAATTGAAGGCAGAAAGAGGAGGGAG  150

seq1  AGATGATGGGGTGGAGGGTGTTACTAACCGACCTCCTGCTGCTCTGGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATGGGGTGGAGGGTGTTACTAACCGACCTCCTGCTGCTCTGGTTT  200

seq1  TAACAGACACCATGACAGACACATGGCTGGAAGGATACTCACTGGGCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGACACCATGACAGACACATGGCTGGAAGGATACTCACTGGGCCAG  250

seq1  GACAACAGGTGGTCCATCCTCTGCTCTCGTTGTGCCTTGTGTATGCCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACAGGTGGTCCATCCTCTGCTCTCGTTGTGCCTTGTGTATGCCTAC  300

seq1  CTTGAGAGTGGGCACTGGTCAGGGTGCCATGCAGGAGGGAGAGGAGGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAGTGGGCACTGGTCAGGGTGCCATGCAGGAGGGAGAGGAGGGTT  350

seq1  TGCCC-TGCCCCCTGCACCTCACAG  374
      ||||| |||||||||||||||||||
seq2  TGCCCTTGCCCCCTGCACCTCACAG  375