BAC Information

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BAC

Clone NameB6Ng01-126M21
Chromosome10 (Build37)
Map Location 39,667,114 - 39,794,845
singlet/doubletdoublet
Overlap geneLOC100041085, BC021785, AI317395, EG666342
Upstream geneLama4, 1700025K23Rik, Tube1, EG624165, LOC100040964, Fyn, LOC629337, Traf3ip2, LOC667964, EG667970, E130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994
Downstream geneSlc16a10, Bxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6, LOC666374, Slc22a16, Ddo, 9030224M15Rik, Cdc40, Wasf1, Gpr6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126M21.bB6Ng01-126M21.g
ACCDH929080DH929081
length815813
definitionDH929080|Mus musculus domesticus DNA, BAC clone: B6Ng01-126M21, 5' end.DH929081|Mus musculus domesticus DNA, BAC clone: B6Ng01-126M21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,794,035 - 39,794,845)(39,667,114 - 39,667,924)
sequence
gaattctctgttgaggacaagctgggatggaacgaagcagctagcctggc
aatggaaaagcatgagcgagaactaggggcaggcatgggagtcacgtggc
attcatagtaagtaaatctggtctgttagtccttctttattctttcaggt
atctctgcaaccattgaattaggttttgttggaatatgggtctgttgaga
aagactcagctttaccaacctacctctgtgacagtttcttagttgaagaa
acacttattgtgtatctccacccctagccccctgttttgagactggctat
gtagctcaggctttcctctatgaatttccttcctctgcttctgtagttac
agcatgtgtcactgagcccaactttttttcttttctaattctcattggtg
ctaaaagttgaaaacactcagagaaatggccatatctggttataaggttt
acaattagttaatttcacatattacttaatctgtcccttataataaatct
gtaaagtaggcaagtacatcattttaactcctggtttatagcttcacagg
agaaagatagtttttgcttagagaattagaaaaagtttatggcattgggt
cttcggcatgaggtgttatgtaaacactggagctttgattaactagggga
tgaatttttcagtttgcttttctttgaacttaagcatcatgaagtgctct
cggctctatccataatttgaaagtcaatgtgtatgcttattctcaaagca
agttttggaaattttattttttttgcattttgatgtggtgtgtgtgtgtg
tgagtgtggagtgag
gaattcccattactgtaggaaaggccatttctcccacggtaccaccaatt
acaaagaatgctgtagattttccagttaaggtggtgtattgctcaatcca
agaaactccactgggaaatgtggttgccattgaggctccatacacagaag
tcgcgatccagagacaaagagggctcttgtcaaaaagcaccagaaagaaa
catgacaccaggctgccaatgttgctcagcacaatcatggttccaggctg
taagagtgttgcaaagaagatggccaggcccctgcaggctgcaaaggttc
cccagaagatggagttcaagccagctgcctcgctctcttccatgccaaca
tgggtggtggcgaaggagaatatgtaagagccgtatgttatctcggctcc
cacatagaagaagaagaagaggaagagcaggcatagcagggccctgtgat
atttagcccttcgagctccctcagcagatgccgcggattttttctgcctt
gaatgttttcttacaaaacagaccaaacagaaagacagaaactactaaaa
cataggtgccgatggaagcatatgtccacagcagattcatgtcatcgggt
accgcgaacacggagtctgaggcgccgtttggaggattggttcagcatca
gagtgtcaaggtcgggattcggtgtggttctgagcagatgctgttgtacc
ccaggccaatttagccagcaggggagccagaaaggcacccaaggcaaaac
tgaagtgcaaggcctgcatatgtggggctcctttgtcccccctgagatca
agatgaggacttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_39794035_39794845
seq2: B6Ng01-126M21.b_50_864 (reverse)

seq1  CTCACT-CACACTCACACACACACACACCACATC-AAATGC-AAAAAAAT  47
      |||||| ||||||||||||||||||||||||||| |||||| ||||||||
seq2  CTCACTCCACACTCACACACACACACACCACATCAAAATGCAAAAAAAAT  50

seq1  AAAATTTCC-AAACTTGCTTTGAGAATAAGCATACACATTGACTTTCAAA  96
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTCCAAAACTTGCTTTGAGAATAAGCATACACATTGACTTTCAAA  100

seq1  TTATGGATAGAGCCGAGAGCACTTCATGATGCTTAAGTTCAAAGAAAAGC  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGATAGAGCCGAGAGCACTTCATGATGCTTAAGTTCAAAGAAAAGC  150

seq1  AAACTGAAAAATTCATCCCCTAGTTAATCAAAGCTCCAGTGTTTACATAA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAAAAATTCATCCCCTAGTTAATCAAAGCTCCAGTGTTTACATAA  200

seq1  CACCTCATGCCGAAGACCCAATGCCATAAACTTTTTCTAATTCTCTAAGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCATGCCGAAGACCCAATGCCATAAACTTTTTCTAATTCTCTAAGC  250

seq1  AAAAACTATCTTTCTCCTGTGAAGCTATAAACCAGGAGTTAAAATGATGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTATCTTTCTCCTGTGAAGCTATAAACCAGGAGTTAAAATGATGT  300

seq1  ACTTGCCTACTTTACAGATTTATTATAAGGGACAGATTAAGTAATATGTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCTACTTTACAGATTTATTATAAGGGACAGATTAAGTAATATGTG  350

seq1  AAATTAACTAATTGTAAACCTTATAACCAGATATGGCCATTTCTCTGAGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAACTAATTGTAAACCTTATAACCAGATATGGCCATTTCTCTGAGT  400

seq1  GTTTTCAACTTTTAGCACCAATGAGAATTAGAAAAGAAAAAAAGTTGGGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAACTTTTAGCACCAATGAGAATTAGAAAAGAAAAAAAGTTGGGC  450

seq1  TCAGTGACACATGCTGTAACTACAGAAGCAGAGGAAGGAAATTCATAGAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGACACATGCTGTAACTACAGAAGCAGAGGAAGGAAATTCATAGAG  500

seq1  GAAAGCCTGAGCTACATAGCCAGTCTCAAAACAGGGGGCTAGGGGTGGAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCTGAGCTACATAGCCAGTCTCAAAACAGGGGGCTAGGGGTGGAG  550

seq1  ATACACAATAAGTGTTTCTTCAACTAAGAAACTGTCACAGAGGTAGGTTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACAATAAGTGTTTCTTCAACTAAGAAACTGTCACAGAGGTAGGTTG  600

seq1  GTAAAGCTGAGTCTTTCTCAACAGACCCATATTCCAACAAAACCTAATTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGCTGAGTCTTTCTCAACAGACCCATATTCCAACAAAACCTAATTC  650

seq1  AATGGTTGCAGAGATACCTGAAAGAATAAAGAAGGACTAACAGACCAGAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTGCAGAGATACCTGAAAGAATAAAGAAGGACTAACAGACCAGAT  700

seq1  TTACTTACTATGAATGCCACGTGACTCCCATGCCTGCCCCTAGTTCTCGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTACTATGAATGCCACGTGACTCCCATGCCTGCCCCTAGTTCTCGC  750

seq1  TCATGCTTTTCCATTGCCAGGCTAGCTGCTTCGTACCATCCCAGCTTGTC  796
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCATGCTTTTCCATTGCCAGGCTAGCTGCTTCGTTCCATCCCAGCTTGTC  800

seq1  CTCAACAGAGAATTC  811
      |||||||||||||||
seq2  CTCAACAGAGAATTC  815

seq1: chr10_39667114_39667924
seq2: B6Ng01-126M21.g_65_877

seq1  GAATTCCAATCACTGTAGGAAAGGCCATTTCTCCCACGGTACCACCAATT  50
      ||||||| || |||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATTACTGTAGGAAAGGCCATTTCTCCCACGGTACCACCAATT  50

seq1  ACAAAGAATGCTGTAGATTTTCCAGTTAAGGTGGTGTATTGCTCAATCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAATGCTGTAGATTTTCCAGTTAAGGTGGTGTATTGCTCAATCCA  100

seq1  AGAAACTCCACTGGGAAATGTGGTTGCCATTGAGGCTCCATACACAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTCCACTGGGAAATGTGGTTGCCATTGAGGCTCCATACACAGAAG  150

seq1  TCGCGATCCAGAGACAAAGAGGGCTCTTGTCAAAAAGCACCAGAAAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCGATCCAGAGACAAAGAGGGCTCTTGTCAAAAAGCACCAGAAAGAAA  200

seq1  CATGACACCAGGCTGCCAATGTTGCTCAGCACAATCATGGTTCCAGGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACACCAGGCTGCCAATGTTGCTCAGCACAATCATGGTTCCAGGCTG  250

seq1  TAAGAGTGTTGCAAAGAAGATGGCCAGGCCCCTGCAGGCTGCAAAGGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTGTTGCAAAGAAGATGGCCAGGCCCCTGCAGGCTGCAAAGGTTC  300

seq1  CCCAGAAGATGGAGTTCAAGCCAGCTGCCTCGCTCTCTTCCATGCCAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAGATGGAGTTCAAGCCAGCTGCCTCGCTCTCTTCCATGCCAACA  350

seq1  TGGGTGGTGGCGAAGGAGAATATGTAAGAGCCGTATGTTATCTCGGCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGTGGCGAAGGAGAATATGTAAGAGCCGTATGTTATCTCGGCTCC  400

seq1  CACATAGAAGAAGAAGAAGAGGAAGAGCAGGCATAGCAGGGCCCTGTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGAAGAAGAAGAAGAGGAAGAGCAGGCATAGCAGGGCCCTGTGAT  450

seq1  ATTTAGCCCTTCGAGCTCCCTCAGCAGATGCCGCGGATTTTTTCTGCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCCCTTCGAGCTCCCTCAGCAGATGCCGCGGATTTTTTCTGCCTT  500

seq1  GAATG-TTTCTTACAAAACAGACCAAACAGAAAGACAGAAACTACTAAAA  549
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTTTCTTACAAAACAGACCAAACAGAAAGACAGAAACTACTAAAA  550

seq1  CATAGGTGCCGATGGAAGCATATGTCCACAGCAGATTCATGTCATCGGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGTGCCGATGGAAGCATATGTCCACAGCAGATTCATGTCATCGGGT  600

seq1  ACCGCGAACACGGAGTCTGAGGCGCCG-TTGGAGGATTGGTTCAGCATCA  648
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACCGCGAACACGGAGTCTGAGGCGCCGTTTGGAGGATTGGTTCAGCATCA  650

seq1  GAGTGTCAAGGTC-GGATTCGGTGTGGTTCTGAGCAGATGCTGTTGTACC  697
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCAAGGTCGGGATTCGGTGTGGTTCTGAGCAGATGCTGTTGTACC  700

seq1  CCAGGCCAATTTAGCCAGCAGGGGAGCCAGAAAGGCACCCAAGGCAAAAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCAATTTAGCCAGCAGGGGAGCCAGAAAGGCACCCAAGGCAAAAC  750

seq1  TGAAGTGCAAGGCCTGCATATGTGGGGCTCCTTTGTCCCCCCAAAGAGTC  797
      ||||||||||||||||||||||||||||||||||||||||||  ||| ||
seq2  TGAAGTGCAAGGCCTGCATATGTGGGGCTCCTTTGTCCCCCCTGAGA-TC  799

seq1  AAGATGAGGACATT  811
      ||||||||||| ||
seq2  AAGATGAGGACTTT  813