BAC Information

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BAC

Clone NameB6Ng01-126N10
Chromosome10 (Build37)
Map Location 115,598,737 - 115,733,374
singlet/doubletdoublet
Overlap genePtprr
Upstream geneTph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071, EG668073, Tspan8, 4933416C03Rik
Downstream genePtprb, Kcnmb4, Cnot2, LOC668080, EG668091, Gm239, Rab3ip, D630029K05Rik, LOC544741, Best3, Lrrc10, Cct2, Frs2, Yeats4, 9530003J23Rik, Lyzs, Lyz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126N10.bB6Ng01-126N10.g
ACCDH929106DH929107
length1,028292
definitionDH929106|Mus musculus domesticus DNA, BAC clone: B6Ng01-126N10, 5' end.DH929107|Mus musculus domesticus DNA, BAC clone: B6Ng01-126N10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,598,737 - 115,599,765)(115,733,087 - 115,733,374)
sequence
gaattcactctgtagaccggggtggcttcgaactcaaatgctggggttaa
ggcatataccaccatgcccagcatgaatcaatcttatttgtttatttttt
aaaaaagttatttgtctaaggctcacatgacagaaaccttgaaacacagc
tttagagacggctccccagtttgagggcacttactgctcttacagaggag
ctgtgtttggttctgagcacccacatgatagtcacagctgcctaggactc
cagttccggaggacgccatgtcatcttccgagctccataggctccaacac
acatgtggttcataatagtgcatacacaatgcacacatacacatgtatat
gaacacacaccatacacatatatagtaaatatctgatatgtataaactat
ttaaatgaaaatatataaaatacttaaataatatattaagtactaactca
tttgactttaaaatagatgtgtcagcataattattcaggaagcacctgag
aaatataggttaagttggcacacagctataattctagcatttaggaggaa
gctgaggcaggagaatgtagagatcagagacagcctatgttacaactgga
tatcatctctgaaattaatggtaatatatataggaaaaattaatacgcat
cactcccttaaatgacttcgaaggttctaggaacctgactttaatgtttg
tgaagaacaggcgaaaactttacccgactcctgaaagatgtcttcatctt
acccaaatggtgtgttctcactaggaaaagaagaaccaggttgagttgtt
tgtgtctcccggaaaccggaaaccaggagaaacgcagccctgcaggctga
ggaagtgctgcgttccctcaatgtggatggtttgcatcagagtttaccac
agtttggaattacagacgtcgcccctgaggtatgtccttgcatgcaacag
ttcaaaaaaaaaaaaaaaaacacgcagttagcacacatgctaatccaaac
cgtgaggctttttggggggggggggggc
tcttaggacagagcattgttttctccttctgcacagggttcagaatacag
tagcatctcagtaaatattttctgagggaatgactggatctttgtagctg
cttggtaagtgctgtcatgtgaatacgttctctgacaagctctttaagta
tggccctggtgcatgcttccaaatgctgtcctgaatatgggaaaaggagg
aatggagagagagagagagagagagagagagagagagagacatgtttttg
tcatatttttttttttttttttttttttcacagagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_115598737_115599765
seq2: B6Ng01-126N10.b_48_1074

seq1  GAATTCACTCTGTAGACCGGGGTGGCTTCGAACTCAAATGCTGGGGTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCGGGGTGGCTTCGAACTCAAATGCTGGGGTTAA  50

seq1  GGCATATACCACCATGCCCAGCATGAATCAATCTTATTTGTTTATTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATACCACCATGCCCAGCATGAATCAATCTTATTTGTTTATTTTTT  100

seq1  AAAAAAGTTATTTGTCTAAGGCTCACATGACAGAAACCTTGAAACACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGTTATTTGTCTAAGGCTCACATGACAGAAACCTTGAAACACAGC  150

seq1  TTTAGAGACGGCTCCCCAGTTTGAGGGCACTTACTGCTCTTACAGAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGACGGCTCCCCAGTTTGAGGGCACTTACTGCTCTTACAGAGGAG  200

seq1  CTGTGTTTGGTTCTGAGCACCCACATGATAGTCACAGCTGCCTAGGACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTGGTTCTGAGCACCCACATGATAGTCACAGCTGCCTAGGACTC  250

seq1  CAGTTCCGGAGGACGCCATGTCATCTTCCGAGCTCCATAGGCTCCAACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCGGAGGACGCCATGTCATCTTCCGAGCTCCATAGGCTCCAACAC  300

seq1  ACATGTGGTTCATAATAGTGCATACACAATGCACACATACACATGTATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGGTTCATAATAGTGCATACACAATGCACACATACACATGTATAT  350

seq1  GAACACACACCATACACATATATAGTAAATATCTGATATGTATAAACTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACACACCATACACATATATAGTAAATATCTGATATGTATAAACTAT  400

seq1  TTAAATGAAAATATATAAAATACTTAAATAATATATTAAGTACTAACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGAAAATATATAAAATACTTAAATAATATATTAAGTACTAACTCA  450

seq1  TTTGACTTTAAAATAGATGTGTCAGCATAATTATTCAGGAAGCACCTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTTTAAAATAGATGTGTCAGCATAATTATTCAGGAAGCACCTGAG  500

seq1  AAATATAGGTTAAGTTGGCACACAGCTATAATTCTAGCATTTAGGAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAGGTTAAGTTGGCACACAGCTATAATTCTAGCATTTAGGAGGAA  550

seq1  GCTGAGGCAGGAGAATGTAGAGATCAGAGACAGCCTATGTTACAACTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGCAGGAGAATGTAGAGATCAGAGACAGCCTATGTTACAACTGGA  600

seq1  TATCATCTCTGAAATTAATGGTAATATATATAGGAAAAATTAATACGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCTCTGAAATTAATGGTAATATATATAGGAAAAATTAATACGCAT  650

seq1  CACTCCCTTAAATGACTTCGAAGGTTCTAGGAACCTGACTTTAATGTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCTTAAATGACTTCGAAGGTTCTAGGAACCTGACTTTAATGTTTG  700

seq1  TGAAGAACAGGCGAAAACTTTACCCGACTCCTGAAAGATGTCTTCATCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAACAGGCGAAAACTTTACCCGACTCCTGAAAGATGTCTTCATCTT  750

seq1  ACCCAAATGGTGTGTTCTCACTAGGAAAAGAAGAACCAGGTTGAGTTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAATGGTGTGTTCTCACTAGGAAAAGAAGAACCAGGTTGAGTTGTT  800

seq1  TGTGTCTCCCGGAAACCGGAAACCAGGAGAAACGCAGGCCCTGCAGGCTG  850
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGTGTCTCCCGGAAACCGGAAACCAGGAGAAACGCA-GCCCTGCAGGCTG  849

seq1  AGGAAGTGCTGCGTTCCCTCAATGTGGATGGTTTGCATCAGAGTTTACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTGCTGCGTTCCCTCAATGTGGATGGTTTGCATCAGAGTTTACCA  899

seq1  CAGTTTGGAATTACAGACGTCGCCCCTGAGGTATGTCCTTGCATGCAACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGGAATTACAGACGTCGCCCCTGAGGTATGTCCTTGCATGCAACA  949

seq1  GTTCAAAAAAAAAAAAAAAAACACGCAGTTAGCACCACATGCTAATCCAA  1000
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTTCAAAAAAAAAAAAAAAAACACGCAGTTAGCA-CACATGCTAATCCAA  998

seq1  ACCGTGAGGCTTTTGGGGGGGGGGGGGGG  1029
      |||||||||||||| ||||||||||||||
seq2  ACCGTGAGGCTTTTTGGGGGGGGGGGGGG  1027

seq1: chr10_115733087_115733374
seq2: B6Ng01-126N10.g_74_365 (reverse)

seq1  TCTCTCTCTCTGTG-------TCTCTGTCTCTGTCTGTCTGTCTGTCTCT  43
      ||||||||||||||                       | || |       
seq2  TCTCTCTCTCTGTGAAAAAAAAAAAAAAAAAAAAAAATATGAC---AAAA  47

seq1  ACCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCATTCCTCC  93
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCATTCCTCC  97

seq1  TTTTCCCATATTCAGGACAGCATTTGGAAGCATGCACCAGGGCCATACTT  143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCATATTCAGGACAGCATTTGGAAGCATGCACCAGGGCCATACTT  147

seq1  AAAGAGCTTGTCAGAGAACGTATTCACATGACAGCACTTACCAAGCAGCT  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCTTGTCAGAGAACGTATTCACATGACAGCACTTACCAAGCAGCT  197

seq1  ACAAAGATCCAGTCATTCCCTCAGAAAATATTTACTGAGATGCTACTGTA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGATCCAGTCATTCCCTCAGAAAATATTTACTGAGATGCTACTGTA  247

seq1  TTCTGAACCCTGTGCAGAAGGAGAAAACAATGCTCTGTCCTAAGA  288
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAACCCTGTGCAGAAGGAGAAAACAATGCTCTGTCCTAAGA  292