BAC Information

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BAC

Clone NameB6Ng01-127E22
Chromosome10 (Build37)
Map Location 119,684,312 - 119,862,623
singlet/doubletdoublet
Overlap geneHmga2
Upstream geneCand1, Grip1, Helb, Irak3, Tmbim4, 1190005P17Rik
Downstream geneLOC100042902, Msrb3, LOC100043488, Lemd3, Wif1, LOC100042911, 4930505D03Rik, LOC100043498, Gns, Rassf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127E22.bB6Ng01-127E22.g
ACCDH929457DH929458
length992477
definitionDH929457|Mus musculus domesticus DNA, BAC clone: B6Ng01-127E22, 5' end.DH929458|Mus musculus domesticus DNA, BAC clone: B6Ng01-127E22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,861,634 - 119,862,623)(119,684,312 - 119,684,794)
sequence
gaattcacggtgttacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgagcagtgcaggtcagagggcagtctgcagggatcgag
tctctccttccgtcatgtgggctctgggacttgtctgacagactcaaatt
gtcagagttgggagcaagagcctttacccacggagcgcctcactgaccct
gctcattaacatctttctgaaacagggtctcatcttttcacatcaagttg
actaggttggccctgagttccagcctaggctgaccttgaacttgtgatct
tcctgccaggttgtaccactcagtcccatacttcatatttgtatctgtca
catgactttgagaattctgataggtagttgggtagtcaagatttctctca
tttggattttttttttaagtcttatttatttatttaatgtgtatggatgt
tttgcctgcatgcatgtctgtgcactacattcttgcttggtgcctacagg
tgccagaagagggtgtcagacccccaggaatctcacagagctacgtatgg
ttttgagccactgtgtaggtactgggactagaaccctggtcttctggacg
gtcagccactgagccatcttcctaggcccctaggtcatttggattttgct
aaaatttggtggaatgaacacaggattattatcatccccccaagtccccc
tgccaaaaaagaactttttttaaaaaaagaaattatttatttttttttat
tatgagtacactgtggctgtcttcagacacaccagaaagagggcatcaga
ttctattacagatggtttgtgagccaccatgtggttgctgggaaattgaa
ctcaagacctcctggaagagcagtcatccatatgctctccccccaccgca
ccccccctccccaagaaaaagaatttttaccacaagcttccagtgtggtt
ctcacttctgctaagacagagcaatggatgctcaagctgctg
acactccttaaaaaccatttcccccagagagggtcctacactgctgaagg
gatctttgccgtggcctgcagggacctccagatacaacagcaacattcct
tctcgagacctggatgcaacaggcgtttgcaggaaggcaacagcaggaga
gacctacctgaaggactcagccgtttatcagtgatgtgcagacaggagca
gtgtcagcctttggaaggacccagaagtctgtttggaggcatttctcaca
gtcctgtaggccacggtcccttctccccacaaccccctaattctctattg
tcttgaagtcagcagggagtctgggcggtaatacctgtaaatgccccaca
gatggcagtaaagggtcttgaggaagcaattactaaaactgcatcaagtt
tcagtttggactagaagcagctagttggcttcttctttcacagccctctg
ttttatgggtggtagggggaaggggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_119861634_119862623
seq2: B6Ng01-127E22.b_45_1036 (reverse)

seq1  CAGCAGCTCTGAGCATCCATTGCTCTGTCCTAGCAAGAAGTGCAGAACCA  50
      |||||||| |||||||||||||||||||| |||| ||||||| |||||||
seq2  CAGCAGCT-TGAGCATCCATTGCTCTGTCTTAGC-AGAAGTG-AGAACCA  47

seq1  CACTGGAAGCTTGTGGTATAAATTCTTTTTCTTGGGGGAGGGGGGGTGCG  100
      |||||||||||||||||| |||||||||||||| ||||||||||||||||
seq2  CACTGGAAGCTTGTGGTAAAAATTCTTTTTCTT-GGGGAGGGGGGGTGCG  96

seq1  GT-GGGGGAGGGCATATGGATTGACTGCTCTTCCA-GAGGTCTTGAGTTC  148
      || ||||||| ||||||||| |||||||||||||| ||||||||||||||
seq2  GTGGGGGGAGAGCATATGGA-TGACTGCTCTTCCAGGAGGTCTTGAGTTC  145

seq1  AA-TTCCCAGCAACCACATGGTGGCTCAC-AACCATCTGTAATAGAATCT  196
      || |||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AATTTCCCAGCAACCACATGGTGGCTCACAAACCATCTGTAATAGAATCT  195

seq1  GATGCCCTC-TTCTGGTGTGTCTGAAGACAGCCACAGTGTACTCATAATA  245
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCCTCTTTCTGGTGTGTCTGAAGACAGCCACAGTGTACTCATAATA  245

seq1  AAAAAAAAT-AATAATTTCTTTTTTT-AAAAAAGTTCTTTTTTGGCAGGG  293
      ||||||||| |||||||||||||||| |||||||||||||||||||||||
seq2  AAAAAAAATAAATAATTTCTTTTTTTAAAAAAAGTTCTTTTTTGGCAGGG  295

seq1  GGACTTGGGGGGATGATAATAATCCTGTGTTCATTCCACCAAATTTTAGC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGGGGGGATGATAATAATCCTGTGTTCATTCCACCAAATTTTAGC  345

seq1  AAAATCCAAATGACCTAGGGGCCTAGGAAGATGGCTCAGTGGCTGACCGT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCAAATGACCTAGGGGCCTAGGAAGATGGCTCAGTGGCTGACCGT  395

seq1  CCAGAAGACCAGGGTTCTAGTCCCAGTACCTACACAGTGGCTCAAAACCA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGACCAGGGTTCTAGTCCCAGTACCTACACAGTGGCTCAAAACCA  445

seq1  TACGTAGCTCTGTGAGATTCCTGGGGGTCTGACACCCTCTTCTGGCACCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTAGCTCTGTGAGATTCCTGGGGGTCTGACACCCTCTTCTGGCACCT  495

seq1  GTAGGCACCAAGCAAGAATGTAGTGCACAGACATGCATGCAGGCAAAACA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCACCAAGCAAGAATGTAGTGCACAGACATGCATGCAGGCAAAACA  545

seq1  TCCATACACATTAAATAAATAAATAAGACTTAAAAAAAAAATCCAAATGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATACACATTAAATAAATAAATAAGACTTAAAAAAAAAATCCAAATGA  595

seq1  GAGAAATCTTGACTACCCAACTACCTATCAGAATTCTCAAAGTCATGTGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATCTTGACTACCCAACTACCTATCAGAATTCTCAAAGTCATGTGA  645

seq1  CAGATACAAATATGAAGTATGGGACTGAGTGGTACAACCTGGCAGGAAGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACAAATATGAAGTATGGGACTGAGTGGTACAACCTGGCAGGAAGA  695

seq1  TCACAAGTTCAAGGTCAGCCTAGGCTGGAACTCAGGGCCAACCTAGTCAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGTTCAAGGTCAGCCTAGGCTGGAACTCAGGGCCAACCTAGTCAA  745

seq1  CTTGATGTGAAAAGATGAGACCCTGTTTCAGAAAGATGTTAATGAGCAGG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATGTGAAAAGATGAGACCCTGTTTCAGAAAGATGTTAATGAGCAGG  795

seq1  GTCAGTGAGGCGCTCCGTGGGTAAAGGCTCTTGCTCCCAACTCTGACAAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGAGGCGCTCCGTGGGTAAAGGCTCTTGCTCCCAACTCTGACAAT  845

seq1  TTGAGTCTGTCAGACAAGTCCCAGAGCCCACATGACGGAAGGAGAGACTC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCTGTCAGACAAGTCCCAGAGCCCACATGACGGAAGGAGAGACTC  895

seq1  GATCCCTGCAGACTGCCCTCTGACCTGCACTGCTCACACACACACACACA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCTGCAGACTGCCCTCTGACCTGCACTGCTCACACACACACACACA  945

seq1  CACACACACACACACACACACACACACACACGTAACACCGTGAATTC  990
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACGTAACACCGTGAATTC  992

seq1: chr10_119684312_119684794
seq2: B6Ng01-127E22.g_66_548

seq1  GAATTCACACTCCTTAAAAACCATTTCCCCCAGAGAGGGTCCTACACTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTCCTTAAAAACCATTTCCCCCAGAGAGGGTCCTACACTGC  50

seq1  TGAAGGGATCTTTGCCGTGGCCTGCAGGGACCTCCAGATACAACAGCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGATCTTTGCCGTGGCCTGCAGGGACCTCCAGATACAACAGCAAC  100

seq1  ATTCCTTCTCGAGACCTGGATGCAACAGGCGTTTGCAGGAAGGCAACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTCTCGAGACCTGGATGCAACAGGCGTTTGCAGGAAGGCAACAGC  150

seq1  AGGAGAGACCTACCTGAAGGACTCAGCCGTTTATCAGTGATGTGCAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGACCTACCTGAAGGACTCAGCCGTTTATCAGTGATGTGCAGACA  200

seq1  GGAGCAGTGTCAGCCTTTGGAAGGACCCAGAAGTCTGTTTGGAGGCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGTGTCAGCCTTTGGAAGGACCCAGAAGTCTGTTTGGAGGCATTT  250

seq1  CTCACAGTCCTGTAGGCCACGGTCCCTTCTCCCCACAACCCCCTAATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGTCCTGTAGGCCACGGTCCCTTCTCCCCACAACCCCCTAATTCT  300

seq1  CTATTGTCTTGAAGTCAGCAGGGAGTCTGGGCGGTAATACCTGTAAATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTCTTGAAGTCAGCAGGGAGTCTGGGCGGTAATACCTGTAAATGC  350

seq1  CCCACAGATGGCAGTAAAGGGTCTTGAGGAAGCAATTACTAAAACTGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGATGGCAGTAAAGGGTCTTGAGGAAGCAATTACTAAAACTGCAT  400

seq1  CAAGTTTCAGTTTGGACTAGAAGCAGCTAGTTGGCTTCTTCTTTCACAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTCAGTTTGGACTAGAAGCAGCTAGTTGGCTTCTTCTTTCACAGC  450

seq1  CCTCTGTTTTATGGGTGGTAGGGGGAAGGGGAA  483
      |||||||||||||||||||||||||||||||||
seq2  CCTCTGTTTTATGGGTGGTAGGGGGAAGGGGAA  483