BAC Information

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BAC

Clone NameB6Ng01-127F07
Chromosome10 (Build37)
Map Location 78,442,988 - 78,498,578
singlet/doubletdoublet
Overlap geneOlfr1352, Olfr1351, Olfr57
Upstream gene1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl, D10Jhu81e, Pwp2, Tmem1, Agpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353
Downstream gene2610008E11Rik, EG624765, AJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127F07.bB6Ng01-127F07.g
ACCDH929475DH929476
length1,113989
definitionDH929475|Mus musculus domesticus DNA, BAC clone: B6Ng01-127F07, 5' end.DH929476|Mus musculus domesticus DNA, BAC clone: B6Ng01-127F07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,497,452 - 78,498,578)(78,442,988 - 78,443,975)
sequence
gaattcttgttattcaatctaatcaatagactgcagtggataacccaaac
cattaactactactaaaacagacactttatgaaggtgaatccattgatct
gcttctagttacactccctaacaggattttcagagctgtctttatgtctt
tgttcctcagactgtagatgaagggattcagcatgggggtgaccacagtg
tacatcaatgaagctgttgcagtagcatgtgagttttgggtcacagcaga
gctgaggtacactcccaggagggtgcaataaaataaggagacaactgaga
ggtgagatgcacaggtggaaaatgctttgtacttcccctgcactgaggag
attgcacaaatggaggatactatcctagagtaagagtaaaggataccaga
gaaggggccaacagccagtagcatagctgtaatgtaaattaccatatcat
taagaaaggtgtcagaacaggcctggtgtacaacttgattaagttcacag
aaaaaatgggggatttccaagtttgtgcagaatgacagccgtaacaccaa
aaaggtgtgtaacagggaatttataacacctataatccagcatgccagaa
tcatcaatccacagcgtcttgtgctcatgatgatcatgtaatgcaggggg
tgacagatggccacatagcggtcataggccatcacagtcagcagaaagat
gtctaaccctgaaaaaagcagtaagaagtacatctggatgatgcagcctg
cataggtgatggccttgctttgtgtgtgaatgtttaccagcatctgtgga
acagtggtggaagtgaagcagatgtccacaaaggacagattagagaggaa
gaggtacatgggtgtgtgcaggtgggagtcaacatgatggccatgatgat
gagtaggtttcagttgaaagtcaatatatacatgaagaggaacagtccaa
atatgacaggctgaatttgaaggtgattctctgaaatcccagaagaaaga
tctgaagctgagtgtcatttcttgtttcatggtgtttatttgctaccaaa
acaagaacgagaggagaggatattgagcctcactcatccatcaacaactg
gacatcgattctt
gaattcttccctatagagtgagatttaaacccaataactattggttacct
ccagtatataagagctattgttatatcatttgggatatattgtcattctg
gtcattgttgtggttcatagactttacaattgggtagtactattgattca
tattcttcccgtaccttctatacagctacaaaacactcctgcacctaagg
ctcagagaacattgtggaatagtgacaaaaagattgtaagagccagatta
tcaaggactttgctttgagatcatgtcacctagtaatgccagaagctata
ccataaaatatcactaaaatggcttctcaaatgtgaactgaacatggtcc
acataaatcactataccagactgggtgaaggaaaacccaagatgttccca
ttctacacaaagaactataggcaactgaggaaaacggaatagagagagtg
gacttccccatggaaaagcataataattaaaacctggtgtcaaatattca
gccctgaaaatatacatacatacaggtagcattaagtagtctgaacatgt
gttttatacatatatatatatatatatccttatataaatgtaataacagc
ctctttaaaaagagaccatgaatttttggagtgtgagcaatgaggtcagg
tctctggacagtatgtaagtctatggaaaaggaagaaggaaaaacaaact
cagatttactggattgtaacctggaccccaagggaaagtgaatcaggaga
tccaggccagtgtcccacagggaaattgtgaagttagagaatgatgaaag
cagagaagattgtgtcttatgagtagatatagagagctgaagctgccttc
tatgatgacttcttggactgaacagcactaggctagaataagatgtggag
cttatcttttgctttcttaagtttcaataggagaggcaacttgtattctt
cttgcttctgtggaaggcagagcttcatctccccatcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_78497452_78498578
seq2: B6Ng01-127F07.b_48_1160 (reverse)

seq1  AAGAATTGATGTCAGTTTGTTGATGGGTGAGTGAGGCTTCAAATATCTCT  50
      |||||| ||||||   |||||||||| |||||||||||   ||||||   
seq2  AAGAATCGATGTCCAGTTGTTGATGGATGAGTGAGGCT--CAATATC---  45

seq1  CTCTCTCGTTTCTTTGTTTTTTTGGTAGGCATATAAAACACATGGAAACA  100
        ||||| | || || || |||||||| ||| || ||||||   ||||||
seq2  --CTCTCCTCTCGTTCTTGTTTTGGTA-GCAAAT-AAACACCATGAAACA  91

seq1  GGAAATGACACTCAGCTTTCAGAATTCTTTCTTCTGGGATTTTCAGAGAA  150
       ||||||||||||||| ||||||  |||||||||||||| ||||||||||
seq2  AGAAATGACACTCAGC-TTCAGA--TCTTTCTTCTGGGA-TTTCAGAGAA  137

seq1  TCAACCTCAAATTCAGCCTGTCATATTTGGACTGTTCCTCTTCATGTATA  200
      ||| | ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTCAAATTCAGCCTGTCATATTTGGACTGTTCCTCTTCATGTATA  187

seq1  TATTGACTTTCACTGGAAACCTACTCATCATCATGGCCATCATTGTTGAC  250
      ||||||||||||   ||||||||||||||||||||||||||| |||||||
seq2  TATTGACTTTCAACTGAAACCTACTCATCATCATGGCCATCA-TGTTGAC  236

seq1  TCCCACCTGCACACACCCATGTACCTCTTCCTCTCTAATCTGTCCTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCTGCACACACCCATGTACCTCTTCCTCTCTAATCTGTCCTTTGT  286

seq1  GGACATCTGCTTCACTTCCACCACTGTTCCACAGATGCTGGTAAACATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATCTGCTTCACTTCCACCACTGTTCCACAGATGCTGGTAAACATTC  336

seq1  ACACACAAAGCAAGGCCATCACCTATGCAGGCTGCATCATCCAGATGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAAAGCAAGGCCATCACCTATGCAGGCTGCATCATCCAGATGTAC  386

seq1  TTCTTACTGCTTTTTTCAGGGTTAGACATCTTTCTGCTGACTGTGATGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACTGCTTTTTTCAGGGTTAGACATCTTTCTGCTGACTGTGATGGC  436

seq1  CTATGACCGCTATGTGGCCATCTGTCACCCCCTGCATTACATGATCATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGACCGCTATGTGGCCATCTGTCACCCCCTGCATTACATGATCATCA  486

seq1  TGAGCACAAGACGCTGTGGATTGATGATTCTGGCATGCTGGATTATAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACAAGACGCTGTGGATTGATGATTCTGGCATGCTGGATTATAGGT  536

seq1  GTTATAAATTCCCTGTTACACACCTTTTTGGTGTTACGGCTGTCATTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAAATTCCCTGTTACACACCTTTTTGGTGTTACGGCTGTCATTCTG  586

seq1  CACAAACTTGGAAATCCCCCATTTTTTCTGTGAACTTAATCAAGTTGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACTTGGAAATCCCCCATTTTTTCTGTGAACTTAATCAAGTTGTAC  636

seq1  ACCAGGCCTGTTCTGACACCTTTCTTAATGATATGGTAATTTACATTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCCTGTTCTGACACCTTTCTTAATGATATGGTAATTTACATTACA  686

seq1  GCTATGCTACTGGCTGTTGGCCCCTTCTCTGGTATCCTTTACTCTTACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGCTACTGGCTGTTGGCCCCTTCTCTGGTATCCTTTACTCTTACTC  736

seq1  TAGGATAGTATCCTCCATTTGTGCAATCTCCTCAGTGCAGGGGAAGTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATAGTATCCTCCATTTGTGCAATCTCCTCAGTGCAGGGGAAGTACA  786

seq1  AAGCATTTTCCACCTGTGCATCTCACCTCTCAGTTGTCTCCTTATTTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTTCCACCTGTGCATCTCACCTCTCAGTTGTCTCCTTATTTTAT  836

seq1  TGCACCCTCCTGGGAGTGTACCTCAGCTCTGCTGTGACCCAAAACTCACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCCTCCTGGGAGTGTACCTCAGCTCTGCTGTGACCCAAAACTCACA  886

seq1  TGCTACTGCAACAGCTTCATTGATGTACACTGTGGTCACCCCCATGCTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTGCAACAGCTTCATTGATGTACACTGTGGTCACCCCCATGCTGA  936

seq1  ATCCCTTCATCTACAGTCTGAGGAACAAAGACATAAAGACAGCTCTGAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTCATCTACAGTCTGAGGAACAAAGACATAAAGACAGCTCTGAAA  986

seq1  ATCCTGTTAGGGAGTGTAACTAGAAGCAGATCAATGGATTCACCTTCATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTTAGGGAGTGTAACTAGAAGCAGATCAATGGATTCACCTTCATA  1036

seq1  AAGTGTCTGTTTTAGTAGTAGTTAATGGTTTGGGTTATCCACTGCAGTCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCTGTTTTAGTAGTAGTTAATGGTTTGGGTTATCCACTGCAGTCT  1086

seq1  ATTGATTAGATTGAATAACAAGAATTC  1127
      |||||||||||||||||||||||||||
seq2  ATTGATTAGATTGAATAACAAGAATTC  1113

seq1: chr10_78442988_78443975
seq2: B6Ng01-127F07.g_69_1057

seq1  GAATTCTTCCCTATAGAGTGAGATTTAAACCCAATAACTATTGGTTACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCTATAGAGTGAGATTTAAACCCAATAACTATTGGTTACCT  50

seq1  CCAGTATATAAGAGCTATTGTTATATCATTTGGGATATATTGTCATTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATATAAGAGCTATTGTTATATCATTTGGGATATATTGTCATTCTG  100

seq1  GTCATTGTTGTGGTTCATAGACTTTACAATTGGGTAGTACTATTGATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGTTGTGGTTCATAGACTTTACAATTGGGTAGTACTATTGATTCA  150

seq1  TATTCTTCCCGTACCTTCTATACAGCTACAAAACACTCCTGCACCTAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTCCCGTACCTTCTATACAGCTACAAAACACTCCTGCACCTAAGG  200

seq1  CTCAGAGAACATTGTGGAATAGTGACAAAAAGATTGTAAGAGCCAGATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGAACATTGTGGAATAGTGACAAAAAGATTGTAAGAGCCAGATTA  250

seq1  TCAAGGACTTTGCTTTGAGATCATGTCACCTAGTAATGCCAGAAGCTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGACTTTGCTTTGAGATCATGTCACCTAGTAATGCCAGAAGCTATA  300

seq1  CCATAAAATATCACTAAAATGGCTTCTCAAATGTGAACTGAACATGGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAATATCACTAAAATGGCTTCTCAAATGTGAACTGAACATGGTCC  350

seq1  ACATAAATCACTATACCAGACTGGGTGAAGGAAAACCCAAGATGTTCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAATCACTATACCAGACTGGGTGAAGGAAAACCCAAGATGTTCCCA  400

seq1  TTCTACACAAAGAACTATAGGCAACTGAGGAAAACGGAATAGAGAGAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACACAAAGAACTATAGGCAACTGAGGAAAACGGAATAGAGAGAGTG  450

seq1  GACTTCCCCATGGAAAAGCATAATAATTAAAACCTGGTGTCAAATATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCCCATGGAAAAGCATAATAATTAAAACCTGGTGTCAAATATTCA  500

seq1  GCCCTGAAAATATACATACATACAGGTAGCATTAAGTAGTCTGAACATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGAAAATATACATACATACAGGTAGCATTAAGTAGTCTGAACATGT  550

seq1  GTTTTATACATATATATATATATATATCCTTATATAAATGTAATAACAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATACATATATATATATATATATCCTTATATAAATGTAATAACAGC  600

seq1  CTCTTTAAAAAGAGACCATGAATTTTTGGAGTGTGAGCAATGAGGTCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAAAAAGAGACCATGAATTTTTGGAGTGTGAGCAATGAGGTCAGG  650

seq1  TCTCTGGACAGTATGTAAGTCTATGGAAAAGGAAGAAGGAAAAACAAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGACAGTATGTAAGTCTATGGAAAAGGAAGAAGGAAAAACAAACT  700

seq1  CAGATTTACTGGATTGTAACCTGGACCCCAAGGGAAAGTGAATCAGGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGATTTACTGGATTGTAACCTGGACCCCAAGGGAAAGTGAATCAGGAG-  749

seq1  ATCCAGGCCAGTGTCCCACAGGGAAATTGTGAAGTTAGAGAATGATGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGCCAGTGTCCCACAGGGAAATTGTGAAGTTAGAGAATGATGAAA  799

seq1  GCAGAGAAGATTGTGTCTAATGAGTAGATATAGAGAGCTGAAGCTGCCTC  850
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  GCAGAGAAGATTGTGTCTTATGAGTAGATATAGAGAGCTGAAGCTGCCTT  849

seq1  CTATGATGAC-TCTTGGACTGAACAGCACTAGGCTAG-ATAAGATGT-GA  897
      |||||||||| |||||||||||||||||||||||||| ||||||||| ||
seq2  CTATGATGACTTCTTGGACTGAACAGCACTAGGCTAGAATAAGATGTGGA  899

seq1  GC-TATCTTTTGCTGTCTTAAGTCTCAATA-GAGA-GCAACCTGTATTCC  944
      || ||||||||||| |||||||| |||||| |||| ||||| |||||| |
seq2  GCTTATCTTTTGCTTTCTTAAGTTTCAATAGGAGAGGCAACTTGTATT-C  948

seq1  TTCCTGCTTTCTTGTGTGAGGCAGAGCTTCAATCTCCCCATCAA  988
      ||| |||||   ||||  |||||||||||| |||||||||||||
seq2  TTCTTGCTT--CTGTGGAAGGCAGAGCTTC-ATCTCCCCATCAA  989