BAC Information

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BAC

Clone NameB6Ng01-127M15
Chromosome13 (Build37)10 (Build37)
Map Location 119,650,016 - 119,650,961100,164,481 - 100,165,581
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneHcn1, LOC100041695, LOC674926, Mrps30, LOC668309, LOC100041278, Fgf10
Downstream geneLOC100041298, LOC100041757, Nnt, Paip1, LOC100041802, 4833420G17Rik, 3110070M22Rik, EG633640
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127M15.bB6Ng01-127M15.g
ACCDH929813DH929814
length9071,105
definitionDH929813|Mus musculus domesticus DNA, BAC clone: B6Ng01-127M15, 5' end.DH929814|Mus musculus domesticus DNA, BAC clone: B6Ng01-127M15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(119,650,016 - 119,650,961)(100,164,481 - 100,165,581)
sequence
gaattctgattggatgaggtggggtggagctagaaggaggtaagtcggtg
gaagtagtaaagagtagtagtataggagttttagcccttgaagtgcgtag
aagtagtagaagagaagctgttgtaataggagttgttttagcttcatgaa
cccttggtgtccatatcgttcgtgttgttcctgtctccaccagctcagag
gaccaacgacaaatggtggcccatacagggaacagggatttttttgtgtt
ggtcggcaatggtagtaagaaaatttggtaaacaaaggtaaggaaacctt
agtaaacagcagtaggaaattttagtaaacagcagtaaagaaaccttagt
aaacagaggtagggaaattttggtaagcaacagtatttaaagaaagcaca
ggcctgtaaggttcccggggaaaaaagggatgaagcattaaggttctcag
gaatagagatgaagggaatttcagcaaaaaaagaaagcataggcctgata
ggttcccctgaaaaaaagggtatggagtgctaaggatcacagatatagag
acagagggaatttaaacaacatgggttcaactgagactaaaataaaagta
aaaatgttagccatctggatcttggtcagggcgtgcttgagggacgccag
tggaaagcacaatgctgaaatagaggaaggagcagcagtgcttgaggagg
ctaaggagattgcttctcaggctagctgccgaaaacctaaacagcttaga
caacaaaccaaagataagaaagaaaaggaatctagctctgaagggtctac
tagtgacagtgacgggactgataacaacagtgacgtctgtagttaaatgt
cccgctagagtatgaggcacggtaggccgtccgaaccatcagcccctccg
tggcctt
gaattctcataatgagctttaaatcatgccttcaagctcacagtggttgt
ctatgtgaatgggtggccccaggatgctggacttctacagaataaacact
ctttgctgttacatactatctgagtccagggtatcattcttctgcgaatc
atggacccttataacaggaatgagaatccgaagagaaggcccatgggaag
gaagcagggaggcacaagaaggtttctgggcatcctcgataaaatgagac
tgcgagttaagtgtgtaagtaagactgtgtggctctggtcgctacaagag
gaagtggtttcttctctagagttttcaggataacagctcccccggaagct
gactacagtagatatagaagccaagaactttagggtgatcataaattcct
gctgcttacacccacaagcttgccatacattataatagcaaatcaaaatg
cttcagagagaaggacttgttcaggtgagcagggaagtgccttctttccc
aatcagttcctaagagttagaaatagataaaaatgctgacaccatcgatt
caagaaagttaaaccgtgctggaagttagcagttaggatatctgactttg
ggatataaaatatatcgaagctgggctttataatttgatcataactcttc
ctcagtttcaataactttcttatttgcccttacagctcttggaaaagagt
caaaacctttgtaaagaaatattattgtgctgagaaaagagcagaagagc
aaaatcctgtttaaattaaaatgaattgagtggaacttttttttaaaggt
gcatagaagagcaaagtggctttgtctgatctcatctttcttcttagtcc
ctctgacctcctttgccaatgggtcccagagaactttttagcattcctct
tttgtgaatcctccttgaagagccccagacccaccccaaaaaaattcata
cttgtcctaaagttccataaatctccttttcaaaaacttccaagaacata
tggcacaagagaaatccagaaaatgtaagaccggtcactttgtccctatg
cctagaatctattccagggatagacccactgtaaattgtataatgggaaa
aaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_119650016_119650961
seq2: B6Ng01-127M15.b_48_855

seq1  GAATTCTGATTGGATGAGGTGGGGTGGAGCTAGAAGGAGGTGCGTCAGCG  50
      |||||||||||||||||||||||||||||||||||||||||  ||| | |
seq2  GAATTCTGATTGGATGAGGTGGGGTGGAGCTAGAAGGAGGTAAGTCGGTG  50

seq1  GAGTAGTAGGAAGATAGGTTTTTTAGCCCTTGCTCTAGGTAGAAGCCAGT  100
      ||  ||||| |                               |||  |||
seq2  GA--AGTAGTA-------------------------------AAG--AGT  65

seq1  AGTAGTGAAGATAGGAGTTTTAGCCCTTGCCATGAGTAGAAGTAGAGTGA  150
      ||||||    |||||||||||||||||||   || ||||||||||    |
seq2  AGTAGT----ATAGGAGTTTTAGCCCTTGAAGTGCGTAGAAGTAGTAGAA  111

seq1  GAGAAGCCAGAAGTAG-AATAGGAGTTGTAGTTTAGACCTTGCCCTAAGA  199
      |||||||     || | ||||||||||||  |||||  |||        |
seq2  GAGAAGC----TGTTGTAATAGGAGTTGT--TTTAG--CTT-------CA  146

seq1  AGAAGCTGCTGGGGAAGAAAGCTGTAAAAAGAAAAAGCCAGAAGTAAAGT  249
       ||| |  || ||         |||            |||    ||  ||
seq2  TGAACC--CTTGG---------TGT------------CCA----TATCGT  169

seq1  TGCTTTGTGAACCCAACGTGGTGTCTGTGTCATTCGTGTCACCACTGACT  299
      |               |||| ||         ||| |||| ||||   ||
seq2  T---------------CGTGTTG---------TTCCTGTCTCCACCAGCT  195

seq1  CGGAGCACCAACGACAAATGGTGGCCCTTACGGGGAA-------------  336
      | ||| ||||||||||||||||||||| ||| |||||             
seq2  CAGAGGACCAACGACAAATGGTGGCCCATACAGGGAACAGGGATTTTTTT  245

seq1  -------TC-------------------TTTAGTAAACAGAGGTAAGGAA  360
             ||                   ||| ||||||| ||||||||||
seq2  GTGTTGGTCGGCAATGGTAGTAAGAAAATTTGGTAAACAAAGGTAAGGAA  295

seq1  ACCTTAGTAAACAGCAGTAGGAAATT------------------------  386
      ||||||||||||||||||||||||||                        
seq2  ACCTTAGTAAACAGCAGTAGGAAATTTTAGTAAACAGCAGTAAAGAAACC  345

seq1  TTAGTAAACAGTGGTAAGGAAATTTTGGTAAGCAACGGTATTTAAAGAAA  436
      ||||||||||| |||| ||||||||||||||||||| |||||||||||||
seq2  TTAGTAAACAGAGGTAGGGAAATTTTGGTAAGCAACAGTATTTAAAGAAA  395

seq1  GCACAGGCCTGTAAGGTTCCCGGGAAAAGAGGGACGAAGCATTAAAGTTC  486
      |||||||||||||||||||||||| |||                      
seq2  GCACAGGCCTGTAAGGTTCCCGGGGAAA----------------------  423

seq1  TCAGGAATAGAGACAAAGCATTAAGGTTCTCAGGTATAGAGATGAAGGTA  536
                    ||||                                
seq2  --------------AAAG--------------------------------  427

seq1  AGGTTCCTGGGGGGTGGGGGGGAGGATGAAGCATTAAGGATCTCAGGAAT  586
                             |||||||||||||||| ||||||||||
seq2  -----------------------GGATGAAGCATTAAGGTTCTCAGGAAT  454

seq1  AGAGATGAAAGGAATTTCAGCAAGAACTAAAGAAAGCATAGGCCTGAAAA  636
      ||||||||| ||||||||||||| |   ||||||||||||||||||| | 
seq2  AGAGATGAAGGGAATTTCAGCAAAA---AAAGAAAGCATAGGCCTGATAG  501

seq1  GTTCCCC-GGAAAAAAGGGGACGGAGCACTAAGGATTTCAGGAATAAAGA  685
      ||||||| | ||||||||| | ||||  ||||||||  |||  ||| |||
seq2  GTTCCCCTGAAAAAAAGGGTATGGAGTGCTAAGGATCACAGATATAGAGA  551

seq1  CAAAGAAAATTTCAGCAACATGGGTCCAACTGCAACTAAAATTAAAGTAA  735
      || ||  ||||| | |||||||||| ||||||  |||||||| |||||||
seq2  CAGAGGGAATTTAAACAACATGGGTTCAACTGAGACTAAAATAAAAGTAA  601

seq1  AAATGTTAGCCATCTGGATCTTGGTTCAGGGCATGCTTGAGGGATGCCAG  785
      |||||||||||||||||||||||| ||||||| ||||||||||| |||||
seq2  AAATGTTAGCCATCTGGATCTTGG-TCAGGGCGTGCTTGAGGGACGCCAG  650

seq1  TGGAAAGTACAATGCTGAAATAGAGGAAGGAGCAGCAGCACTTGAGGAGG  835
      ||||||| ||||||||||||||||||||||||||||||  ||||||||||
seq2  TGGAAAGCACAATGCTGAAATAGAGGAAGGAGCAGCAGTGCTTGAGGAGG  700

seq1  CTAAGGAGATTGCTTCTCAGGCTAGCTCCTGAAAACCTAAACAGCTTAGA  885
      ||||||||||||||||||||||||||| | ||||||||||||||||||||
seq2  CTAAGGAGATTGCTTCTCAGGCTAGCTGCCGAAAACCTAAACAGCTTAGA  750

seq1  CAACAAACCAAAGATAAAAAAGCGAAGAAGGAATCTAGCTCTGAAGGGTC  935
      ||||||||||||||||| ||||   | |||||||||||||||||||||||
seq2  CAACAAACCAAAGATAAGAAAG---AAAAGGAATCTAGCTCTGAAGGGTC  797

seq1  TACTAGTGACA  946
      |||||||||||
seq2  TACTAGTGACA  808

seq1: chr10_100164481_100165581
seq2: B6Ng01-127M15.g_69_1173

seq1  GAATTCTCATAATGAGCTTTAAATCATGCCTTCAAGCTCACAGTGGTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATAATGAGCTTTAAATCATGCCTTCAAGCTCACAGTGGTTGT  50

seq1  CTATGTGAATGGGTGGCCCCAGGATGCTGGACTTCTACAGAATAAACACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGAATGGGTGGCCCCAGGATGCTGGACTTCTACAGAATAAACACT  100

seq1  CTTTGCTGTTACATACTATCTGAGTCCAGGGTATCATTCTTCTGCGAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTGTTACATACTATCTGAGTCCAGGGTATCATTCTTCTGCGAATC  150

seq1  ATGGACCCTTATAACAGGAATGAGAATCCGAAGAGAAGGCCCATGGGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACCCTTATAACAGGAATGAGAATCCGAAGAGAAGGCCCATGGGAAG  200

seq1  GAAGCAGGGAGGCACAAGAAGGTTTCTGGGCATCCTCGATAAAATGAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGGGAGGCACAAGAAGGTTTCTGGGCATCCTCGATAAAATGAGAC  250

seq1  TGCGAGTTAAGTGTGTAAGTAAGACTGTGTGGCTCTGGTCGCTACAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAGTTAAGTGTGTAAGTAAGACTGTGTGGCTCTGGTCGCTACAAGAG  300

seq1  GAAGTGGTTTCTTCTCTAGAGTTTTCAGGATAACAGCTCCCCCGGAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGTTTCTTCTCTAGAGTTTTCAGGATAACAGCTCCCCCGGAAGCT  350

seq1  GACTACAGTAGATATAGAAGCCAAGAACTTTAGGGTGATCATAAATTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACAGTAGATATAGAAGCCAAGAACTTTAGGGTGATCATAAATTCCT  400

seq1  GCTGCTTACACCCACAAGCTTGCCATACATTATAATAGCAAATCAAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTACACCCACAAGCTTGCCATACATTATAATAGCAAATCAAAATG  450

seq1  CTTCAGAGAGAAGGACTTGTTCAGGTGAGCAGGGAAGTGCCTTCTTTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAGAGAAGGACTTGTTCAGGTGAGCAGGGAAGTGCCTTCTTTCCC  500

seq1  AATCAGTTCCTAAGAGTTAGAAATAGATAAAAATGCTGACACCATCGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTTCCTAAGAGTTAGAAATAGATAAAAATGCTGACACCATCGATT  550

seq1  CAAGAAAGTTAAACCGTGCTGGAAGTTAGCAGTTAGGATATCTGACTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGTTAAACCGTGCTGGAAGTTAGCAGTTAGGATATCTGACTTTG  600

seq1  GGATATAAAATATATCGAAGCTGGGCTTTATAATTTGATCATAACTCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATAAAATATATCGAAGCTGGGCTTTATAATTTGATCATAACTCTTC  650

seq1  CTCAGTTTCAATAACTTTCTTATTTGCCCTTACAGCTCTTGGAAAAGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTTCAATAACTTTCTTATTTGCCCTTACAGCTCTTGGAAAAGAGT  700

seq1  CAAAACCTTTGTAAAGAAATATTATTGTGCTGAGAAAAGAGCAGAAGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCTTTGTAAAGAAATATTATTGTGCTGAGAAAAGAGCAGAAGAGC  750

seq1  AAAATCCTGTTTAAATTAAAATGAATTGAGTGGAACTTTTTTTTAAAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCTGTTTAAATTAAAATGAATTGAGTGGAACTTTTTTTTAAAGGT  800

seq1  GCATAGAAGAGCAAAGTGGCTTTGTCTGATCTCATCTTTCTTCTTAGTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGAAGAGCAAAGTGGCTTTGTCTGATCTCATCTTTCTTCTTAGTCC  850

seq1  CTCTGACCTCCTGTGCCAATGGGGTCACAGAGAACTGTTTAGCATT-CTC  899
      |||||||||||| ||||||| ||||| ||||||||| ||||||||| |||
seq2  CTCTGACCTCCTTTGCCAAT-GGGTCCCAGAGAACTTTTTAGCATTCCTC  899

seq1  TTTTGTGAATCCTCTTGAAAGAGCCCAAGAACACACACAAAAAAATTCAT  949
      |||||||||||||| |  |||||||| ||| |   | |||||||||||||
seq2  TTTTGTGAATCCTCCTTGAAGAGCCCCAGACCCACCCCAAAAAAATTCAT  949

seq1  AC-TGTCTAAAAGTTCAATAAATCT-CTTTTCAAAAACTTCAGAG-ACAT  996
      || ||||  ||||||| |||||||| |||||||||||||||  || ||||
seq2  ACTTGTCCTAAAGTTCCATAAATCTCCTTTTCAAAAACTTCCAAGAACAT  999

seq1  AT-GCACAAGAGAAATCGAGAAAATGTAAGACCGTTCA-TTTGTCCTTAT  1044
      || |||||||||||||| |||||||||||||||| ||| ||||||| |||
seq2  ATGGCACAAGAGAAATCCAGAAAATGTAAGACCGGTCACTTTGTCCCTAT  1049

seq1  TGCTAGATACTATTTCAGGGGATGACCCACATGATATTGGTATAATGGGA  1094
        |||||  ||||| |||||   ||||||| ||  | | |||||||||||
seq2  GCCTAGAATCTATTCCAGGGATAGACCCAC-TGTAAATTGTATAATGGGA  1098

seq1  AAGAATG  1101
      || ||||
seq2  AAAAATG  1105