BAC Information

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BAC

Clone NameB6Ng01-128D09
Chromosome10 (Build37)
Map Location 12,825,208 - 12,953,156
singlet/doubletdoublet
Overlap genePlagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2
Upstream geneUtrn, LOC665172, Stx11, Sf3b5
Downstream geneLOC100039475, Fuca2, Pex3, Deadc1, Aig1, EG666859, Hivep2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128D09.bB6Ng01-128D09.g
ACCDH930125DH930126
length1,036143
definitionDH930125|Mus musculus domesticus DNA, BAC clone: B6Ng01-128D09, 5' end.DH930126|Mus musculus domesticus DNA, BAC clone: B6Ng01-128D09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,951,851 - 12,953,156)(12,825,208 - 12,825,350)
sequence
gaattcttccagtcttattcttggtgcttgtgaaaggggaaagcgagaga
agcaaaggcatgtggggtgggccaggtcacatcgaatgatacacttgaat
ggtgcagaggacacaagaagcaggccccaggagcagacaagtcagaaaag
ctgcagaaaggactcttctccaggaagcctccctcatctgcccatcttcc
caggaaggccttgctgcagctgagcctttctctgggccactgctacagag
aaaacactatttctccatgtgctgctagcagagactcatttgcattttct
gggaggtccatagcttttgtcttaacgtgtcaaatgtcaccacagtgacc
ctagagctgtgttactggtgggactttgtcactatggattgctgtgtctg
tcagagatgatgggcaagccttagtctcagcaccagacgtgttgtaggga
cagttaccaaaagctgacctagctagctagcacggatgcttttctagtct
ggaaatgagggcacgctgctttctaggtctcattatgaattcccaagatg
ctgtggcttctcttttaatacctgaaagtgaccttaactttgaaatgttc
cagacagaaaacttgccacctagaggctgtaaaaacatgtaactcatctc
tgtcttccccctgccctcctgcagctcagcctgagacctaccgtggcaga
gctacaagcccgaaggatcctgcggttcaatgagtatgtagaagtgacag
attccccagactatgaccgccgagcagacaagccctgggccaggttgaca
cctgcagacaaggcaagaatctcagagtggcattttttttctcccaaaac
ctgcaaactcatcctccatcctcctcctatctctcttctctctctctctg
tctgtctctgtccctcccctggtctctctctctctctgtctctctctctg
cctctgtctctggcctctctcgtctctctctgtctctcctgtgcccctct
ctgctcctcctccgtattcctctgtctctgtctctg
tttaatcatgctttaatgcacagcttggtagcagtctcttaagtctgaga
ggtgtcttttctttcttaattggtggactcatgtttaatgttgaagcagg
catgagcttgatggtgggagttattgggagttatgggggggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_12951851_12953156
seq2: B6Ng01-128D09.b_46_1080 (reverse)

seq1  AGAGACAGAGACAGAGACAGAGAGAGAGAGAGACACAGAGAGAGAGAGAC  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGAGAGAGACAGAGAGAGAGACACACAGAGAGAGAGACAGAGAGAGACAG  100
                                                        
seq2  --------------------------------------------------  0

seq1  AGAGAGAGACACAGAGAGAGAGAGACAGACAGAGAGAGAGACAGAGACAG  150
                                                        
seq2  --------------------------------------------------  0

seq1  AGACAGAGAGATACAGAGAGAGAGACAGAGAGAGAGACAGAGAGAGACAG  200
                                                        
seq2  --------------------------------------------------  0

seq1  AGAGAGAGACAGAGAGAGAGACAGAGAGAGAGACAGAGAGAGAGAGACAG  250
                                                        
seq2  --------------------------------------------------  0

seq1  ACAGAGAGAGAGACAGAGACAGAGACAGAGAGATACAGAGAGAGAGAGAC  300
                    ||||||||||||||||  |||| ||| ||| |||  
seq2  --------------AGAGACAGAGACAGAGGAATACGGAG-GAG-GAG--  32

seq1  AGAGAGAGAGACACAGAGAGAGACAGAGAGAGACAGAGAGAGAGACAGAG  350
        |||||| | ||||| ||||||||||||||||| ||||||| | |||||
seq2  -CAGAGAGGGGCACAG-GAGAGACAGAGAGAGAC-GAGAGAG-GCCAGAG  78

seq1  ACAGAGACAGAGAGAGAGACAGAGAGAGAGAGAGACAGAGGGAGGGACAG  400
      |||||| |||||||||||||||||||||||||||||   |||||||||||
seq2  ACAGAGGCAGAGAGAGAGACAGAGAGAGAGAGAGACCAGGGGAGGGACAG  128

seq1  AGACAGACAGAGAGAGAGAG-AGAGAGATAGGAGGAGGATGGAGGATGAG  449
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGACAGACAGAGAGAGAGAGAAGAGAGATAGGAGGAGGATGGAGGATGAG  178

seq1  TATGCAGGTTTTGGGAGAAAAAAAATGCCACTCTGAGATTCTTGCCTTGT  499
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGGTTTTGGGAGAAAAAAAATGCCACTCTGAGATTCTTGCCTTGT  228

seq1  CTGCAGGTGTCAACCTGGCCCAGGGCTTGTCTGCTCGGCGGTCATAGTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGTGTCAACCTGGCCCAGGGCTTGTCTGCTCGGCGGTCATAGTCT  278

seq1  GGGGAATCTGTCACTTCTACATACTCATTGAACCGCAGGATCCTTCGGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATCTGTCACTTCTACATACTCATTGAACCGCAGGATCCTTCGGGC  328

seq1  TTGTAGCTCTGCCACGGTAGGTCTCAGGCTGAGCTGCAGGAGGGCAGGGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGCTCTGCCACGGTAGGTCTCAGGCTGAGCTGCAGGAGGGCAGGGG  378

seq1  GAAGACAGAGATGAGTTACATGTTTTTACAGCCTCTAGGTGGCAAGTTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAGAGATGAGTTACATGTTTTTACAGCCTCTAGGTGGCAAGTTTT  428

seq1  CTGTCTGGAACATTTCAAAGTTAAGGTCACTTTCAGGTATTAAAAGAGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGGAACATTTCAAAGTTAAGGTCACTTTCAGGTATTAAAAGAGAA  478

seq1  GCCACAGCATCTTGGGAATTCATAATGAGACCTAGAAAGCAGCGTGCCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGCATCTTGGGAATTCATAATGAGACCTAGAAAGCAGCGTGCCCT  528

seq1  CATTTCCAGACTAGAAAAGCATCCGTGCTAGCTAGCTAGGTCAGCTTTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCAGACTAGAAAAGCATCCGTGCTAGCTAGCTAGGTCAGCTTTTG  578

seq1  GTAACTGTCCCTACAACACGTCTGGTGCTGAGACTAAGGCTTGCCCATCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTGTCCCTACAACACGTCTGGTGCTGAGACTAAGGCTTGCCCATCA  628

seq1  TCTCTGACAGACACAGCAATCCATAGTGACAAAGTCCCACCAGTAACACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGACAGACACAGCAATCCATAGTGACAAAGTCCCACCAGTAACACA  678

seq1  GCTCTAGGGTCACTGTGGTGACATTTGACACGTTAAGACAAAAGCTATGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGGGTCACTGTGGTGACATTTGACACGTTAAGACAAAAGCTATGG  728

seq1  ACCTCCCAGAAAATGCAAATGAGTCTCTGCTAGCAGCACATGGAGAAATA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCAGAAAATGCAAATGAGTCTCTGCTAGCAGCACATGGAGAAATA  778

seq1  GTGTTTTCTCTGTAGCAGTGGCCCAGAGAAAGGCTCAGCTGCAGCAAGGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTCTCTGTAGCAGTGGCCCAGAGAAAGGCTCAGCTGCAGCAAGGC  828

seq1  CTTCCTGGGAAGATGGGCAGATGAGGGAGGCTTCCTGGAGAAGAGTCCTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGGGAAGATGGGCAGATGAGGGAGGCTTCCTGGAGAAGAGTCCTT  878

seq1  TCTGCAGCTTTTCTGACTTGTCTGCTCCTGGGGCCTGCTTCTTGTGTCCT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGCTTTTCTGACTTGTCTGCTCCTGGGGCCTGCTTCTTGTGTCCT  928

seq1  CTGCACCATTCAAGTGTATCATTCGATGTGACCTGGCCCACCCCACATGC  1249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCATTCAAGTGTATCATTCGATGTGACCTGGCCCACCCCACATGC  978

seq1  CTTTGCTTCTCTCGCTTTCCCCTTTCACAAGCACCAAGAATAAGACTGGA  1299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTTCTCTCGCTTTCCCCTTTCACAAGCACCAAGAATAAGACTGGA  1028

seq1  AGAATTC  1306
      |||||||
seq2  AGAATTC  1035

seq1: chr10_12825208_12825350
seq2: B6Ng01-128D09.g_71_213

seq1  TTTAATCATGCTTTAATGCACAGCTTGGTAGCAGTCTCTTAAGTCTGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCATGCTTTAATGCACAGCTTGGTAGCAGTCTCTTAAGTCTGAGA  50

seq1  GGTGTCTTTTCTTTCTTAATTGGTGGACTCATGTTTAATGTTGAAGCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTTTTCTTTCTTAATTGGTGGACTCATGTTTAATGTTGAAGCAGG  100

seq1  CATGAGCTTGATGGTGGGAGTTATTGGGAGTTATGGGGGGGCT  143
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGCTTGATGGTGGGAGTTATTGGGAGTTATGGGGGGGCT  143