BAC Information

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BAC

Clone NameB6Ng01-129E08
Chromosome10 (Build37)
Map Location 35,520,989 - 35,666,010
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667824, LOC100041585
Downstream geneLOC667860, Hs3st5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129E08.bB6Ng01-129E08.g
ACCDH930900DH930901
length1,1411,046
definitionDH930900|Mus musculus domesticus DNA, BAC clone: B6Ng01-129E08, 5' end.DH930901|Mus musculus domesticus DNA, BAC clone: B6Ng01-129E08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,664,849 - 35,666,010)(35,520,989 - 35,522,045)
sequence
gaattcaagcataagaacctcatgcagtctgatctgatctgtgttaaatt
ccaatttcatgtggaatggaaaattatttacccgccccagctttgtctta
acctaaggatctgtattgagctaggggtgtggtggtctacattttgaacc
aggatgctaggtaaccagaaacaaacagatcaatgtgatttcaaggctgt
cttgacctacattgtgaattagaggccagcctgggttacatagggatacc
ccattttaaaacagaaaaagaaaggaaaaaaaaagaaagaaagaaaagaa
aagatctgtcttgggaaggtatgcttgttctattcatttatttttgttac
tgtttctcttctaattaactccctatttaaaggaatattgaggactataa
tgtacttttatttttccatcaaaagaaatttgttagtcctcttgttacat
agtaagaccctgtttcaaaacaacaacaacagcaacagcaacaacaacaa
caacaacaacaacaacaacaacaacaaggtccccaattcttctgttttaa
cactctgtgctttaagcatctatttaaagtttaactattgtggcaggcca
actggtagatgccccatctggcagttggatctgacaatgtcccactactg
attaacctttgagcatcagatagaagtaattctatgcaagttgtagtcac
atactaaagatgactctcattcctttcgtttttaatgggacactttctgg
tgctcaagaatctaggtgagctaaggaaaatggtccagctgtctccatgt
ttgagttttaggaggataccagctacagttcataaagcaccaagagagtg
gcagacttaagtcacaggaagagtacgttattcttttaagtccttaagtt
cctaaagggtaatttttccatcatagataaccataaacttgacagaattt
tcctgttatccatctctatggtgtgtggcttcagaggataagaaaatcaa
ccctgccctagtgctgtggtgatatctctctagatactgaagtgaaccat
agacacctttattggacagtaagctgtgtctgcatgcttatttcttcaag
ggaaacttgacatatgctcgtgaaatgttgcagttgaaatt
gaattcaattcagtgcagtttggaacagttaagttgaatgcagttgagtt
cagtagagtcaatgcagtcctatttagttctattcagtttgtgcagtcag
tgcagtcagtgtagttcagtccatggaactcagaggcagtgtttttcaag
tagtacagttcagtttaaagccaagaagagccttattgaatcattcagct
caaagaggggttttagcagaaaacaagtgattttaaccagccagccagaa
ttcagaaagatatagaaaggttaatttcattcagaagtaaacctctgata
ggacaattatatctcaggaaaaaaggttacttttacagagaaaaataaga
caaatattcattatgtagaagtttgtatcacaaatgaaagaatgtatcac
aaagtgtctgacttgttgtatgctccctgtttactgactgaagaacagtg
tggtagatgtgaccaaatgataaaattactagagcaaagttttttacact
gaatttatttcctcacaggctattcagattccacagtggttgaaaatgca
acccagtattccaactttagattataattatccaaatgaggctcaactta
ggaagctctacattttttgacattgacttttcacaaatgtaaatgaaaca
ctgacaggtctaacgtgatgcttccaagtgatgaaattctgcttcctgac
attcattactcaagaggtatatgtataaattatggaggtattaggtaaaa
gggctgggggctcataaaaattaagtggaagacacttaaagttactgaat
ttcaacatctttagtttatagcttgggaaacaattgttgaagtttgtgat
tgccaatcaagtaagtagtccagtgttatttaattttgatttacattatc
atgccaatacagacatttaattatactcatattccagtcagaaactgaga
gtgttattatctagaatataaaattttttcggggtgaatatagagttttt
tgtctgtttctgttgtctctgccttctaaaataagtctttcactat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_35664849_35666010
seq2: B6Ng01-129E08.b_49_1189 (reverse)

seq1  AATTTCAACTGCAAAACATTTCACGAGGCATAATGTCAGGTTTTTCCCTG  50
      ||||||||||||  |||||||||||| |||| |||||| |  ||||||| 
seq2  AATTTCAACTGC--AACATTTCACGA-GCAT-ATGTCAAG--TTTCCCTT  44

seq1  GAAGAAAATAAGACATGCCAGAACACAGCTTACTGTCCCAAATAGAGGTG  100
      |||| ||||||| |||| ||| ||||||||||||||||  |||| |||||
seq2  GAAG-AAATAAG-CATG-CAG-ACACAGCTTACTGTCC--AATAAAGGTG  88

seq1  TCTATGGGTTTCACATATCAAGTATCTAGGAGAGAATATCACCACAGCAC  150
      |||||||  |||||   |  |||||||| ||||| |||||||||||||||
seq2  TCTATGG--TTCAC---TTCAGTATCTA-GAGAG-ATATCACCACAGCAC  131

seq1  TTAGGGCAGGGTTTTGATTTTCTTTATCCTCTGAAGCCACACACCATAGA  200
       ||||||||||  ||||||||| |||||||||||||||||||||||||||
seq2  -TAGGGCAGGG--TTGATTTTC-TTATCCTCTGAAGCCACACACCATAGA  177

seq1  GATGGATAACAGGAAAATTCTGTCAAGTTTATGGTTATCTATGATGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATAACAGGAAAATTCTGTCAAGTTTATGGTTATCTATGATGGAAA  227

seq1  AATTACCC-TTAGGAACTTAAGGACTTAAAAGAATAACGTACTCTTCCTG  299
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCCTTTAGGAACTTAAGGACTTAAAAGAATAACGTACTCTTCCTG  277

seq1  TGACTTAAGTCTGCCACTCTCTTGGTGCTTTATGAACTGTAGCTGGTATC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTAAGTCTGCCACTCTCTTGGTGCTTTATGAACTGTAGCTGGTATC  327

seq1  CTCCTAAAACTC-AACATGGAGACAGCTGGACCATTTTCCTTAGCTCACC  398
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTCCTAAAACTCAAACATGGAGACAGCTGGACCATTTTCCTTAGCTCACC  377

seq1  TAGATTCTTGAGCACCAGAAAGTGTCCCATTAAAAACGAAAGGAATGAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTCTTGAGCACCAGAAAGTGTCCCATTAAAAACGAAAGGAATGAGA  427

seq1  GTCATCTTTAGTATGTGACTACAACTTGCATAGAATTACTTCTATCTGAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTTTAGTATGTGACTACAACTTGCATAGAATTACTTCTATCTGAT  477

seq1  GCTCAAAGGTTAATCAGTAGTGGGACATTGTCAGATCCAACTGCCAGATG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAAGGTTAATCAGTAGTGGGACATTGTCAGATCCAACTGCCAGATG  527

seq1  GGGCATCTACCAGTTGGCCTGCCACAATAGTTAAACTTTAAATAGATGCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATCTACCAGTTGGCCTGCCACAATAGTTAAACTTTAAATAGATGCT  577

seq1  TAAAGCACAGAGTGTTAAAACAGAAGAATTGGGGACCTTGTTGTTGTTGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCACAGAGTGTTAAAACAGAAGAATTGGGGACCTTGTTGTTGTTGT  627

seq1  TGTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGCTGTTGTTGTTGTTTTGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGCTGTTGTTGTTGTTTTGA  677

seq1  AACAGGGTCTTACTATGTAACAAGAGGACTAACAAATTTCTTTTGATGGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGTCTTACTATGTAACAAGAGGACTAACAAATTTCTTTTGATGGA  727

seq1  AAAATAAAAGTACATTATAGTCCTCAATATTCCTTTAAATAGGGAGTTAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAGTACATTATAGTCCTCAATATTCCTTTAAATAGGGAGTTAA  777

seq1  TTAGAAGAGAAACAGTAACAAAAATAAATGAATAGAACAAGCATACCTTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGAGAAACAGTAACAAAAATAAATGAATAGAACAAGCATACCTTC  827

seq1  CCAAGACAGATCTTTTCTTTTCTTTCTTTCTTTTTTTTTCCTTTCTTTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACAGATCTTTTCTTTTCTTTCTTTCTTTTTTTTTCCTTTCTTTTT  877

seq1  CTGTTTTAAAATGGGGTATCCCTATGTAACCCAGGCTGGCCTCTAATTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTAAAATGGGGTATCCCTATGTAACCCAGGCTGGCCTCTAATTCA  927

seq1  CAATGTAGGTCAAGACAGCCTTGAAATCACATTGATCTGTTTGTTTCTGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTAGGTCAAGACAGCCTTGAAATCACATTGATCTGTTTGTTTCTGG  977

seq1  TTACCTAGCATCCTGGTTCAAAATGTAGACCACCACACCCCTAGCTCAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTAGCATCCTGGTTCAAAATGTAGACCACCACACCCCTAGCTCAAT  1027

seq1  ACAGATCCTTAGGTTAAGACAAAGCTGGGGCGGGTAAATAATTTTCCATT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATCCTTAGGTTAAGACAAAGCTGGGGCGGGTAAATAATTTTCCATT  1077

seq1  CCACATGAAATTGGAATTTAACACAGATCAGATCAGACTGCATGAGGTTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGAAATTGGAATTTAACACAGATCAGATCAGACTGCATGAGGTTC  1127

seq1  TTATGCTTGAATTC  1162
      ||||||||||||||
seq2  TTATGCTTGAATTC  1141

seq1: chr10_35520989_35522045
seq2: B6Ng01-129E08.g_67_1111

seq1  GAATTCAATTCAGTGCAGTTTGGAACAGTTAAGTTGAATGCAGTTGAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCAGTGCAGTTTGGAACAGTTAAGTTGAATGCAGTTGAGTT  50

seq1  CAGTAGAGTCAATGCAGTCCTATTTAGTTCTATTCAGTTTGTGCAGTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGAGTCAATGCAGTCCTATTTAGTTCTATTCAGTTTGTGCAGTCAG  100

seq1  TGCAGTCAGTGTAGTTCAGTCCATGGAACTCAGAGGCAGTGTTTTTCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCAGTGTAGTTCAGTCCATGGAACTCAGAGGCAGTGTTTTTCAAG  150

seq1  TAGTACAGTTCAGTTTAAAGCCAAGAAGAGCCTTATTGAATCATTCAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACAGTTCAGTTTAAAGCCAAGAAGAGCCTTATTGAATCATTCAGCT  200

seq1  CAAAGAGGGGTTTTAGCAGAAAACAAGTGATTTTAACCAGCCAGCCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGGGGTTTTAGCAGAAAACAAGTGATTTTAACCAGCCAGCCAGAA  250

seq1  TTCAGAAAGATATAGAAAGGTTAATTTCATTCAGAAGTAAACCTCTGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAAGATATAGAAAGGTTAATTTCATTCAGAAGTAAACCTCTGATA  300

seq1  GGACAATTATATCTCAGGAAAAAAGGTTACTTTTACAGAGAAAAATAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAATTATATCTCAGGAAAAAAGGTTACTTTTACAGAGAAAAATAAGA  350

seq1  CAAATATTCATTATGTAGAAGTTTGTATCACAAATGAAAGAATGTATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTCATTATGTAGAAGTTTGTATCACAAATGAAAGAATGTATCAC  400

seq1  AAAGTGTCTGACTTGTTGTATGCTCCCTGTTTACTGACTGAAGAACAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTCTGACTTGTTGTATGCTCCCTGTTTACTGACTGAAGAACAGTG  450

seq1  TGGTAGATGTGACCAAATGATAAAATTACTAGAGCAAAGTTTTTTACACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGATGTGACCAAATGATAAAATTACTAGAGCAAAGTTTTTTACACT  500

seq1  GAATTTATTTCCTCACAGGCTATTCAGATTCCACAGTGGTTGAAAATGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTATTTCCTCACAGGCTATTCAGATTCCACAGTGGTTGAAAATGCA  550

seq1  ACCCAGTATTCCAACTTTAGATTATAATTATCCAAATGAGGCTCAACTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTATTCCAACTTTAGATTATAATTATCCAAATGAGGCTCAACTTA  600

seq1  GGAAGCTCTACATTTTTTGACATTGACTTTTCACAAATGTAAATGAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTCTACATTTTTTGACATTGACTTTTCACAAATGTAAATGAAACA  650

seq1  CTGACAGGTCTAACGTGATGCTTCCAAGTGATGAAATTCTGCTTCCTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGGTCTAACGTGATGCTTCCAAGTGATGAAATTCTGCTTCCTGAC  700

seq1  ATTCATTACTCAAGAGGTATATGTATAAATTATGGAGGTATTAGGTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTACTCAAGAGGTATATGTATAAATTATGGAGGTATTAGGTAAAA  750

seq1  GGGCTGGGGGCTCATAAAAATTAAGTGGAAGAACACTTAAAGTTACTGAA  800
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGGCTGGGGGCTCATAAAAATTAAGTGGAAG-ACACTTAAAGTTACTGAA  799

seq1  TTTCAACATCTTTAGTTTATAAGCTT-GGAAACAATTGTTGAAGTTTGTG  849
      |||||||||||||||||||| ||||| |||||||||||||||||||||||
seq2  TTTCAACATCTTTAGTTTAT-AGCTTGGGAAACAATTGTTGAAGTTTGTG  848

seq1  ATTGCCAATCAGGTAAGTAGTCCAGTGTTATTTAATTTTGATTTACATTA  899
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCAATCAAGTAAGTAGTCCAGTGTTATTTAATTTTGATTTACATTA  898

seq1  TCATGCCAATAACAGACATTTAAATTTATACTCATA-TCCAGTCAGAAAA  948
      |||||||||| ||||||||||||  ||||||||||| ||||||||| |||
seq2  TCATGCCAAT-ACAGACATTTAA--TTATACTCATATTCCAGTCAG-AAA  944

seq1  CTGAGAGTG-TATTATCTAGAATATAAAATTTTTTCGGGGGTGGAAATAT  997
      ||||||||| |||||||||||||||||||||||||| ||||||  |||||
seq2  CTGAGAGTGTTATTATCTAGAATATAAAATTTTTTC-GGGGTG--AATAT  991

seq1  AGAGTTTTTTTTGTTCTGTTTCTGTTGTTCTCTGCCTTCATAAAAATAAA  1047
      ||||||||||    ||||||||||||| ||||||||||| |||||   ||
seq2  AGAGTTTTTT---GTCTGTTTCTGTTG-TCTCTGCCTTC-TAAAA--TAA  1034

seq1  GTC-TTCACTA  1057
      ||| |||||||
seq2  GTCTTTCACTA  1045