BAC Information

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BAC

Clone NameB6Ng01-129F23
Chromosome17 (Build37)10 (Build37)
Map Location 5,724,161 - 5,725,130104,053,522 - 104,054,369
singlet/doubletsingletsinglet
Overlap geneZdhhc14
Upstream genePpia-ps17_26.1, Arid1b, 5730437N04Rik, Ldhal6b, LOC100040282, LOC666919, LOC100040312
Downstream gene3300005D01Rik, LOC100040342, LOC100040352, Snx9, LOC666951, Synj2, Serac1, Gtf2h5, 2210038L17Rik, LOC545184, Tulp4, EG433058, Tmem181, LOC100040453, LOC100040471, Dynlt1, LOC547127, LOC100040488, LOC100040500, LOC100040531, LOC100040525, LOC100040563, LOC100040546, LOC100040536
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129F23.bB6Ng01-129F23.g
ACCDH930971DH930972
length9811,092
definitionDH930971|Mus musculus domesticus DNA, BAC clone: B6Ng01-129F23, 5' end.DH930972|Mus musculus domesticus DNA, BAC clone: B6Ng01-129F23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,724,161 - 5,725,130)(104,053,522 - 104,054,369)
sequence
gaattcttctctcttccacccttctccacaacactagttaagagagaaga
gggggatacaaagtgaaggaaagagtcctgaataaggtcagaggtcagaa
agctggagattgttattgttagacaacttcctgctgattaggggcattga
gttccttggggcaaatttcatctttgctctcaggatgtctaatttcttct
tgtttcttcttggcacatgactacttaacaaacttctaccaacaacaacc
aagatcccaacaacaatccactactctgtgccccagaatttgtataccct
ctgaaaagtccccagaattccaaatgtcacacaattgcagaaactatctg
cagctgacaaaatcacgcccctgctagagaacgaggcaaatcatagtcag
ctgctgcagacaatctaatgtagccccatatctcacacctgggattaaaa
taaaaccatgcttttataatatttctgtgtttttcaaagaagccaaaacc
ccaaattcctcacaacaccaaggtctctaggaaggagcacccagcctgat
tctacgctcagagtcaccctgcaggtcataggcatagttctcactcacct
cataaactgagatcagacagtccacagaggttaccccatgggagggggaa
gcttgtggtgagacagtcctcagcattcagaagctaaactcagagcaata
tttaatatttaatcctttcatcaagagtctgaggcactgctagcttccaa
ccatcctcggttgcgttacaagtcagagaaggtgaaggtcaaatggatgg
gaaactggtccagaggggaaacagtccatctgaagaagtaagtgatgccg
agggagcctagcagaactgttgaatgtcgctctgcgctggaagggaagtg
gcggaatgtgtgatgtgccctgggctgaggagaagggtctggttagagaa
caggaagcaccaagatagatgagcctagaac
gaattctacagagtagctacgggagaacagaacagacatgaggctgggca
aggcagaggaccaaaaatgcaaaggcacagtcaagtgggaaaacaaacag
cagccacacacaaaggatgctgacagggaggtttaagattagcatcttat
ttatagcagggcctcgatgctctctatgcaaatgagctggcattcaaagc
aaagagagtgccgcgaatataacctaagaatgaaagtcgctcaaaggaag
gctgtaggatttaagcacacctaaaagcagatgcgatgattaagacacca
ggatgcaggtattcagccctcctgcctagccagcagcaaaaggaatcact
ctcctctccacagtttgctccttggctcagtcctcaacacagatacctta
gtcatcaaagctcaataactaaaatgaataaagtcaaaggtacagagcta
aacaaagaattctcaactgaggaatattgaatggctgagaagcacctaaa
aaaatgttcaacatccttagacatcagggaaatgcaaatcaaaacaaccc
tgagattccacctcacaccagtcagaatggctaatatcaaaaaactcagg
tgacagcagatgctggcgaggatgtggagaaagaggaacactcctccatt
gctggtgggattgctagctggtacaaccactctggaaatcagtctggtgg
ttcctcagaaagttggacatagtactacctgaggacctagtaataccact
cctgggaatagacccagaagatgatccaactggtaagaaggacacatgct
ccactatttcatagcagccttatttataatagccagaagctggagagaac
ccagatgtccctcagcagaggaatgggatacagaaaatgtggtacattta
cacaatggagtactattcagctattaaaaacaatgaatttatgaaagtca
taggcaattggatggattctggaggatatcatcctgggtggaggtaaccc
aatcacaaagaactcaacatggtatgcactccactgataagtggatataa
gcccagaagcccaagaagcttgattatcccaggatacaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_5724161_5725130
seq2: B6Ng01-129F23.b_66_1027

seq1  CCTTCTCCACAACACTAGTTAAGAGAGAAGAGGGGGATACAAAGTGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCCACAACACTAGTTAAGAGAGAAGAGGGGGATACAAAGTGAAGG  50

seq1  AAAGAGTCCTGAATAAGGTCAGAGGTCAGAAAGCTGGAGATTGTTATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTCCTGAATAAGGTCAGAGGTCAGAAAGCTGGAGATTGTTATTGT  100

seq1  TAGACAACTTCCTGCTGATTAGGGGCATTGAGTTCCTTGGGGCAAATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAACTTCCTGCTGATTAGGGGCATTGAGTTCCTTGGGGCAAATTTC  150

seq1  ATCTTTGCTCTCAGGATGTCTAATTTCTTCTTGTTTCTTCTTGGCACATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGCTCTCAGGATGTCTAATTTCTTCTTGTTTCTTCTTGGCACATG  200

seq1  ACTACTTAACAAACTTCTACCAACAACAACCAAGATCCCAACAACAATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTAACAAACTTCTACCAACAACAACCAAGATCCCAACAACAATCC  250

seq1  ACTACTCTGTGCCCCAGAATTTGTATACCCTCTGAAAAGTCCCCAGAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTCTGTGCCCCAGAATTTGTATACCCTCTGAAAAGTCCCCAGAATT  300

seq1  CCAAATGTCACACAATTGCAGAAACTATCTGCAGCTGACAAAATCACGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGTCACACAATTGCAGAAACTATCTGCAGCTGACAAAATCACGCC  350

seq1  CCTGCTAGAGAACGAGGCAAATCATAGTCAGCTGCTGCAGACAATCTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTAGAGAACGAGGCAAATCATAGTCAGCTGCTGCAGACAATCTAAT  400

seq1  GTAGCCCCATATCTCACACCTGGGATTAAAATAAAACCATGCTTTTATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCCCATATCTCACACCTGGGATTAAAATAAAACCATGCTTTTATAA  450

seq1  TATTTCTGTGTTTTTCAAAGAAGCCAAAACCCCAAATTCCTCACAACACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTGTGTTTTTCAAAGAAGCCAAAACCCCAAATTCCTCACAACACC  500

seq1  AAGGTCTCTAGGAAGGAGCACCCAGCCTGATTCTACGCTCAGAGTCACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTCTAGGAAGGAGCACCCAGCCTGATTCTACGCTCAGAGTCACCC  550

seq1  TGCAGGTCATAGGCATAGTTCTCACTCACCTCATAAACTGAGATCAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTCATAGGCATAGTTCTCACTCACCTCATAAACTGAGATCAGACA  600

seq1  GTCCACAGAGGTTACCCCATGGGAGGGGGAAGCTTGTGGTGAGACAGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACAGAGGTTACCCCATGGGAGGGGGAAGCTTGTGGTGAGACAGTCC  650

seq1  TCAGCATTCAGAAGCTAAACTCAGAGCAATATTTAATATTTAATCCTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATTCAGAAGCTAAACTCAGAGCAATATTTAATATTTAATCCTTTC  700

seq1  ATCAAGAGTCTGAGGCACTGCTAGCTTCCAACCATCCTCGGTTGCGTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAGTCTGAGGCACTGCTAGCTTCCAACCATCCTCGGTTGCGTTAC  750

seq1  AAGTCAGAGAAGGTGAAGGTCAAATGGATGGGAAACTGGTCCAGAGGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGAGAAGGTGAAGGTCAAATGGATGGGAAACTGGTCCAGAGGGGA  800

seq1  AACGGTCCATCTGAAGAAGTAAGTGATGCCGAGGGAGCCTAGCAGAACTG  850
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCCATCTGAAGAAGTAAGTGATGCCGAGGGAGCCTAGCAGAACTG  850

seq1  -TGAATGTCGCTCTGCGCTGGGAAGGGAGGTGGCGGAATGTGTGAATGTG  899
       |||||||||||||||||| |||||||| ||||||||||||||| |||| 
seq2  TTGAATGTCGCTCTGCGCT-GGAAGGGAAGTGGCGGAATGTGTG-ATGT-  897

seq1  GCCCTGGGCTGAAGGAGGAAGGGGTCTGGTTAGAGAACAGGAAAGCATCA  949
      ||||||||||| |||||  | |||||||||||||||||||| ||||| ||
seq2  GCCCTGGGCTG-AGGAG--AAGGGTCTGGTTAGAGAACAGG-AAGCACCA  943

seq1  GAGAATAGATGAGCCTAGAAC  970
       || |||||||||||||||||
seq2  -AG-ATAGATGAGCCTAGAAC  962

seq1: chr10_104053522_104054369
seq2: B6Ng01-129F23.g_516_1157 (reverse)

seq1  AAATTGTATCTT---ATATCTTGGGTATCCTAAGTTTCTGGGCTAATATC  47
      |||||||||| |   |||  |   |  || |  | ||||||||| |||||
seq2  AAATTGTATCCTGGGATA-ATCAAGCTTCTTGGGCTTCTGGGCTTATATC  49

seq1  CACTTATCAGT-GAGTACATATTGCG-CGAGTTCCTTTGTGATTGGGTTA  95
      ||||||||||| |||| ||||    |  ||||| ||||||||||||||||
seq2  CACTTATCAGTGGAGTGCATACCATGTTGAGTT-CTTTGTGATTGGGTTA  98

seq1  CC-GCACTCAGGATGATACTCTCCAG-GTCCATCCATTTGCCTAGGAATT  143
      ||  ||| ||||||||||  ||||||  |||||||| ||||||| || ||
seq2  CCTCCACCCAGGATGATATCCTCCAGAATCCATCCAATTGCCTATGACTT  148

seq1  TCATAAATTCATTCTTTTTAATAGCTCCATTTACATTTAATTTAATTAAT  193
      ||||||||||||| ||||||||||||  ||                    
seq2  TCATAAATTCATTGTTTTTAATAGCTGAAT--------------------  178

seq1  GTAATTACAATTAATTAATTTATTAATTAAATAATTTAATAATTTAATTG  243
                                                        
seq2  --------------------------------------------------  178

seq1  ATAAATTAATTTAATTAATTAATTTAATTAATTAAATTAAATAATAATTT  293
                                                        
seq2  --------------------------------------------------  178

seq1  AATAATAAATTAAATATTTTAAAATTAATAATAATTTTATAAGTAAATAA  343
                                               ||||     
seq2  -----------------------------------------AGTA-----  182

seq1  TTTAATTAATGTAATTTAATTAATGTAATTACATTACATTTAATAGCTCC  393
                                                    ||||
seq2  ----------------------------------------------CTCC  186

seq1  ATTGTGTAAATGTACCACATTTTCTGTAT-CTATTCCTCTGTTGAGGGGC  442
      ||||||||||||||||||||||||||||| | ||||||||| |||||| |
seq2  ATTGTGTAAATGTACCACATTTTCTGTATCCCATTCCTCTGCTGAGGGAC  236

seq1  ATCTGGGTTCTTTCCAGCTCCTGGCTATTATAAATAAGGCTGCTATGAAT  492
      ||||||||||| ||||||| ||||||||||||||||||||||||||||| 
seq2  ATCTGGGTTCTCTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAA-  285

seq1  ATAGTGGAGCATGTGTCCTTCTTACCGGTTGGGGCATCTTCTGGATATAT  542
      |||||||||||||||||||||||||| |||||  |||||||||| | |||
seq2  ATAGTGGAGCATGTGTCCTTCTTACCAGTTGGATCATCTTCTGGGTCTAT  335

seq1  GCCCAGAAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAATTTTC  592
       ||||| || |||||| || | ||||| ||||||||||||||||| ||||
seq2  TCCCAGGAGTGGTATTACTAGGTCCTCAGGTAGTACTATGTCCAACTTTC  385

seq1  TGACGAACCGCCAGACGGATTTCCAGAGTGGTTGTACAAGCCTGCAATCC  642
      ||| ||||| |||||| |||||||||||||||||||| |||  |||||||
seq2  TGAGGAACCACCAGACTGATTTCCAGAGTGGTTGTACCAGCTAGCAATCC  435

seq1  CACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCT  692
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCT  485

seq1  GCTGTCACCTGA-ATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGG  741
      ||||||||||||  |||||||| |||||||||||||||||||||||||||
seq2  GCTGTCACCTGAGTTTTTTGATATTAGCCATTCTGACTGGTGTGAGGTGG  535

seq1  AATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGA  791
      ||||||||||||||||||||||||||||||||||||  ||||||||||||
seq2  AATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGTCTAAGGATGTTGA  585

seq1  ACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAATT  841
      ||||||||| ||||||||||| |||||||  |||||||||| ||||||||
seq2  ACATTTTTTTAGGTGCTTCTCAGCCATTCAATATTCCTCAGTTGAGAATT  635

seq1  CTTTGTT  848
      |||||||
seq2  CTTTGTT  642