BAC Information

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BAC

Clone NameB6Ng01-129I04
Chromosome10 (Build37)17 (Build37)
Map Location 38,189,162 - 38,190,34834,305,868 - 34,306,319
singlet/doubletsingletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100040915, Lama4, 1700025K23Rik, Tube1, EG624165, LOC100040964, Fyn, LOC629337
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129I04.bB6Ng01-129I04.g
ACCDH931072DH931073
length1,136306
definitionDH931072|Mus musculus domesticus DNA, BAC clone: B6Ng01-129I04, 5' end.DH931073|Mus musculus domesticus DNA, BAC clone: B6Ng01-129I04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(38,189,162 - 38,190,348)(34,305,868 - 34,306,319)
sequence
gaattccattctcactggaaaatttcctgatggaccaggcttcacaacac
ttcacagtgctaagcaactacacagcacactgaggggtctcctgctgagt
tcaatcaattcaaatacccgttagcttacctaaataaatttcactccaaa
gaagaccctttaagaggtgggatgtgactttacagatgggaaatgtttct
cttcatctcctgacaaacaagtgctctcctctaaaaaccaaaccctcaga
taagcatttgatgggcatgcttattggaaagtggagatttctgaaatttc
tctctctctcaaaaaaaaaaaaaaagacttttaaacatgttccaaatatt
ttttttaaatcagtgaaaattcagtttttggcctcaatttcttttttaaa
aatttaattaaaacacaatcacatcatttttctacttcttctccctcttg
tttctcatgcctgcccttggacaccatcatggtctcctttactttagcca
ttgttggtaagtatgtgtggttttactgctgtgaacagacaccatgacca
aggtaactctggtaagacatttaactggggctggtttacaggctcagagg
tttaatccagtatcatcaaggcatgacagtgttcagacagacatggtgca
ggatgagctgagagttcaatatcttcatctgaagactgctagaagactgg
ctttcaggcagcttggatgagagtcttaaagcccatgcccacagtgacac
acattctaattctgccactccctgggccaagcatattcaaaccaccacag
tgtgaataaatgaataaacagataactggtgagtctattcagtgttgtat
acatgttcttaggcctaaccactcagtactgaataacaaactaggagggt
catgctttaagtagagggattcaccctctttagttttaattgcatccaca
gttaggcccatagattttgtcatctagtagacatcacttctgttgaccac
aggatctatagcatgaattcactcctagatgctaagtgcaacttacctct
aagcttttcatcttcattggtgaactagaaggtatctcgtgttgagatgt
cattatcagtaacctcctgtcacaagatctgtacca
ctcatgttctgtaactcaagcaaatgatgtccttagcaacacagacttac
tgccaggtttcagagtaaccaaaagaactgtcatggactgtaatgtttgg
aggtctttgggacctcagtagacaaagacttcaaaggagttaaagcattc
ctgggactgagcattttatttgctgtgcctcattataaggtaattcattt
taaactctctgtctctctgactctctgactctgtctctccatctctttgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtacacacacatatgtgtgtgtgt
gtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_38189162_38190348
seq2: B6Ng01-129I04.b_48_1183 (reverse)

seq1  TGGTAACAGATCTTTGGTGACAAGGAGGTTTTATCCCTAGATATTAAATT  50
      |||| |||||||||  ||||| ||||||||      || |||| | |   
seq2  TGGT-ACAGATCTT--GTGAC-AGGAGGTT-----ACT-GATAATGA---  37

seq1  GAACAATCTCTATCACCGAGAATTAAACTTTCCAAATGTTCACCAAATAG  100
           ||||| | || ||||    | || ||| |   |||||||||   |
seq2  ----CATCTC-AACA-CGAG----ATACCTTCTA---GTTCACCAA--TG  72

seq1  AAGATGAAAAAGCTTTAGAGGGTAAGTTTGCACTTAAGCATCTAAGGAGT  150
      |||||| |||||| ||||| |||||| |||||||| ||||||| ||||| 
seq2  AAGATG-AAAAGC-TTAGA-GGTAAG-TTGCACTT-AGCATCT-AGGAG-  115

seq1  TGAAATTTCATTGCTATAGATTCCCTGTGGTTCCAACAGAAGTTGATGTC  200
      ||||  |||| ||||||||||  ||||||||  ||||||||| |||||| 
seq2  TGAA--TTCA-TGCTATAGAT--CCTGTGGT--CAACAGAAG-TGATGT-  156

seq1  CTAACTTAGATGGACAAAATCTTATGGGGCCTAACTGTTGGATGCAATTA  250
      |||   ||||| ||||||||| ||| ||||||||||| ||||||||||| 
seq2  CTA--CTAGAT-GACAAAATC-TAT-GGGCCTAACTG-TGGATGCAATT-  199

seq1  AAAACTAAAGAGGGTGAATCCCTCTACTTAAAGCATGACCCTCCTAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAAAGAGGGTGAATCCCTCTACTTAAAGCATGACCCTCCTAGTTT  249

seq1  GTTATTCAGTACTGAGTGGTTAGGCCTAGAAACATGTATACAACACTGAA  350
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  GTTATTCAGTACTGAGTGGTTAGGCCTAAGAACATGTATACAACACTGAA  299

seq1  TAGACTCACCAGTTATCTGTTTATTCATTTATTCACACTGTGGTGGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTCACCAGTTATCTGTTTATTCATTTATTCACACTGTGGTGGTTTG  349

seq1  AATATGCTTGGCCCAGGGAGTGGCAGAATTAGAATGTGTGTCACTGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCTTGGCCCAGGGAGTGGCAGAATTAGAATGTGTGTCACTGTGGG  399

seq1  CATGGGCTTTAAGACTCTCATCCAAGCTGCCTGAAAGCCAGTCTTCTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCTTTAAGACTCTCATCCAAGCTGCCTGAAAGCCAGTCTTCTAGC  449

seq1  AGTCTTCAGATGAAGATATTGAACTCTCAGCTCATCCTGCACCATGTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCAGATGAAGATATTGAACTCTCAGCTCATCCTGCACCATGTCTG  499

seq1  TCTGAACACTGTCATGCCTTGATGATACTGGATTAAACCTCTGAGCCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACACTGTCATGCCTTGATGATACTGGATTAAACCTCTGAGCCTGT  549

seq1  AAACCAGCCCCAGTTAAATGTCTTACCAGAGTTACCTTGGTCATGGTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGCCCCAGTTAAATGTCTTACCAGAGTTACCTTGGTCATGGTGTC  599

seq1  TGTTCACAGCAGTAAAACCACACATACTTACCAACAATGGCTAAAGTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACAGCAGTAAAACCACACATACTTACCAACAATGGCTAAAGTAAA  649

seq1  GGAGACCATGATGGTGTCCAAGGGCAGGCATGAGAAACAAGAGGGAGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCATGATGGTGTCCAAGGGCAGGCATGAGAAACAAGAGGGAGAAG  699

seq1  AAGTAGAAAAATGATGTGATTGTGTTTTAATTAAATTTTTAAAAAAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAAAAATGATGTGATTGTGTTTTAATTAAATTTTTAAAAAAGAAA  749

seq1  TTGAGGCCAAAAACTGAATTTTCACTGATTTAAAAAAAATATTTGGAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCCAAAAACTGAATTTTCACTGATTTAAAAAAAATATTTGGAACA  799

seq1  TGTTTAAAAGTCTTTTTTTTTTTTTTTGAGAGAGAGAGAAATTTCAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAAAGTCTTTTTTTTTTTTTTTGAGAGAGAGAGAAATTTCAGAAA  849

seq1  TCTCCACTTTCCAATAAGCATGCCCATCAAATGCTTATCTGAGGGTTTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACTTTCCAATAAGCATGCCCATCAAATGCTTATCTGAGGGTTTGG  899

seq1  TTTTTAGAGGAGAGCACTTGTTTGTCAGGAGATGAAGAGAAACATTTCCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGAGGAGAGCACTTGTTTGTCAGGAGATGAAGAGAAACATTTCCC  949

seq1  ATCTGTAAAGTCACATCCCACCTCTTAAAGGGTCTTCTTTGGAGTGAAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTAAAGTCACATCCCACCTCTTAAAGGGTCTTCTTTGGAGTGAAAT  999

seq1  TTATTTAGGTAAGCTAACGGGTATTTGAATTGATTGAACTCAGCAGGAGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAGGTAAGCTAACGGGTATTTGAATTGATTGAACTCAGCAGGAGA  1049

seq1  CCCCTCAGTGTGCTGTGTAGTTGCTTAGCACTGTGAAGTGTTGTGAAGCC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCAGTGTGCTGTGTAGTTGCTTAGCACTGTGAAGTGTTGTGAAGCC  1099

seq1  TGGTCCATCAGGAAATTTTCCAGTGAGAATGGAATTC  1187
      |||||||||||||||||||||||||||||||||||||
seq2  TGGTCCATCAGGAAATTTTCCAGTGAGAATGGAATTC  1136

seq1: chr17_34305868_34306319
seq2: B6Ng01-129I04.g_285_379 (reverse)

seq1  ACACACACACACACACACA--------CACACACACATGCACACACACAC  42
      ||||||||||||||||| |         |||||||||  |||||||||||
seq2  ACACACACACACACACATATGTGTGTGTACACACACA--CACACACACAC  48

seq1  ACACACACAGAGACAGAGAGAGAGACAGAGATGGAGAGACAGAGAGATAG  92
      ||||||||| | | |||  |||||||||||   ||||| ||||||||   
seq2  ACACACACACAAAGAGATGGAGAGACAGAGTCAGAGAGTCAGAGAGA---  95

seq1  ATAGGCACACACACATACACACACACACACACACAGAAAGAAAGAAAGAG  142
                                                        
seq2  --------------------------------------------------  95

seq1  AGGGACACAGAGAGACATAGAGACAGACAGACACACACAGAGAGAAAGAC  192
                                                        
seq2  --------------------------------------------------  95

seq1  AGACAGACAGAGAGACAGACAGACAGACACACACAGAGAAATAGGAGAGA  242
                                                        
seq2  --------------------------------------------------  95

seq1  TAGACAGACAGACACAGAGGGAAAGACAGACAGACAGACAGACACATCTC  292
                                                        
seq2  --------------------------------------------------  95

seq1  TCTCTCTCTCTCTCACACACACAGAAAGAGACAGGAGAGATAGACAGACA  342
                                                        
seq2  --------------------------------------------------  95

seq1  CACACAGAGACAAACAGAGACAGAGGCAGCAGAGAAAGAGAGAAGAGAGA  392
                                                        
seq2  --------------------------------------------------  95

seq1  GAGACACAGAGAGACATAGAAACAGACACATACAGAAAGAGAGAGATAGA  442
                                                        
seq2  --------------------------------------------------  95

seq1  GTCAGAGAGA  452
                
seq2  ----------  95