BAC Information

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BAC

Clone NameB6Ng01-129P21
Chromosome10 (Build37)
Map Location 80,888,000 - 81,037,209
singlet/doubletdoublet
Overlap geneNfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes
Upstream geneTcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta, Thop1, Creb3l3, Map2k2, Zbtb7a, Pias4, Eef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik
Downstream geneTle2, Tle6, BC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944, EG210583, EG666738, EG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133, LOC100042712, B230315N10Rik, LOC100042718, EG237412, LOC666611, Gm1553
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129P21.bB6Ng01-129P21.g
ACCDH931424DH931425
length1,135153
definitionDH931424|Mus musculus domesticus DNA, BAC clone: B6Ng01-129P21, 5' end.DH931425|Mus musculus domesticus DNA, BAC clone: B6Ng01-129P21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,036,080 - 81,037,209)(80,888,000 - 80,888,152)
sequence
gaattctcagtccctgtagtagctgggacaacaggcctctgtgtgccatc
aggccacctcctacatcccatcaagtttaagggtgtcccccagagctgag
aagccacctgtcaccatggaaacccccttccccccaggaatcatcctttg
tttccaactctggcaggactagacctcagaagaggaaggaggggacccac
accttcaatcccagcacttgaaatgcagaggcaggcagatctctctgagt
ttcaggacagcttggtctactgtggtggtttgaccatgcttggcccaggg
agtagcactatttggaggtgtggccttgttggagtaggtgtagtcttgtt
ggaggaagtatgccactctgggagtgggctttgaagctctgccaagtgcc
ttagtcagacttcttctaggggccttcagaagaagacacagaactctctg
ctcctcctgtaccatgcctgcctggaggccttcatgcacctgtctcgatg
attatggactgaccctctgactctgtaagccagccccaattgccttggtc
atggtgtctgtttacagcagtaaaatcttaactaagatatctacagagca
agtttcaggacaaccaggttctacacagagaaaccttgtctcagggagag
ggagggaaaaaaaaaaaccaaggaaagaaacctgagctctggtccatcat
taaatcaatcaataaatgtatgcctggtgctactgtgaactactatgcac
tgggaaacagtgggcaacaatcataggggaaaagacctcacatccacatt
aacgtttgggatctctgtgggcagctaagtcagctacagaggacaggggc
ctttatgagacttgcacggggccagcgcttctacagcaggagggatacta
gctgaaaacctaggacttcaggattaaaggacagaatggagctctctctg
atcaaactctgggagatgagtcacagagcaaccaaatcacagcttgtctg
gcaggagctgtttgaaaagcaccatttagaacaagcggatgacagaggaa
caacatgaacccactgcgatctaatggtggggagagcgtctcgttaggta
acaattgagatatggaacttttcaaagtctcgtgg
aggggactcttgagatcccatgggggactccctcagggtaggagggggtg
agtgggagatcacaggggtggcatccttcctgcccgatcgacccactctc
ttctatgggggatattcaggccaaggacacattatgttttcatggctgga
gcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_81036080_81037209
seq2: B6Ng01-129P21.b_52_1186 (reverse)

seq1  CCACG-GACTTTGTAAAGTTCCATCT-ACAATGTTAACCTTACTGAG-CG  47
      ||||| ||||||| |||||||||| |  ||||  | |||| || ||| ||
seq2  CCACGAGACTTTGAAAAGTTCCATATCTCAATTGTTACCTAAC-GAGACG  49

seq1  CTCTCCCACACATATGATCGCAGT-GGCTCATGTTTGTTCCTCTGTCAT-  95
      |||||||   |||  ||||||||| || ||||| ||||||||||||||| 
seq2  CTCTCCCCACCATTAGATCGCAGTGGGTTCATG-TTGTTCCTCTGTCATC  98

seq1  CGCTTG-TCTAAATTGTTGCTTTTCATACAGCTCCTGACCAG-CCAGCTG  143
      |||||| |||||| || ||||||||| |||||||||| |||| | |||||
seq2  CGCTTGTTCTAAA-TGGTGCTTTTCAAACAGCTCCTG-CCAGACAAGCTG  146

seq1  TGATCTTGGCTGCTCTGTGGCTCATCTCCCAGAGTTTGATCAGAGAGAGC  193
      |||| |||| ||||||||| ||||||||||||||||||||||||||||||
seq2  TGAT-TTGGTTGCTCTGTGACTCATCTCCCAGAGTTTGATCAGAGAGAGC  195

seq1  TCCATTCTGTCCTTTTATCCTGGAAGTCCTAGGTTTTCAGCTAGTAT-CC  242
      ||||||||||||||| ||||| ||||||||||||||||||||||||| ||
seq2  TCCATTCTGTCCTTTAATCCT-GAAGTCCTAGGTTTTCAGCTAGTATCCC  244

seq1  TCCTGCTGTAG-AGCGCTGGCCCCGTGCAAGTCTCATAAAGGCCCCTGTC  291
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTGTAGAAGCGCTGGCCCCGTGCAAGTCTCATAAAGGCCCCTGTC  294

seq1  CTCTGTAGCTGACTTAGCTGCCCACAGAGAT-CCAAACGTTAATGTGGAT  340
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTCTGTAGCTGACTTAGCTGCCCACAGAGATCCCAAACGTTAATGTGGAT  344

seq1  GTGAGGTC-TTTCCCCTATGATTGTTGCCCACTGTTTCCCAGTGCATAGT  389
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTCTTTTCCCCTATGATTGTTGCCCACTGTTTCCCAGTGCATAGT  394

seq1  AGTTCACAGTAGCACCAGGCATACATTTATTGATTGATTTAATGATGGAC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACAGTAGCACCAGGCATACATTTATTGATTGATTTAATGATGGAC  444

seq1  CAGAGCTCAGGTTTCTTTCCTTGGTTTTTTTTTTTCCCTCCCTCTCCCTG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTCAGGTTTCTTTCCTTGGTTTTTTTTTTTCCCTCCCTCTCCCTG  494

seq1  AGACAAGGTTTCTCTGTGTAGAACCTGGTTGTCCTGAAACTTGCTCTGTA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGGTTTCTCTGTGTAGAACCTGGTTGTCCTGAAACTTGCTCTGTA  544

seq1  GATATCTTAGTTAAGATTTTACTGCTGTAAACAGACACCATGACCAAGGC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTTAGTTAAGATTTTACTGCTGTAAACAGACACCATGACCAAGGC  594

seq1  AATTGGGGCTGGCTTACAGAGTCAGAGGGTCAGTCCATAATCATCGAGAC  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGGCTGGCTTACAGAGTCAGAGGGTCAGTCCATAATCATCGAGAC  644

seq1  AGGTGCATGAAGGCCTCCAGGCAGGCATGGTACAGGAGGAGCAGAGAGTT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCATGAAGGCCTCCAGGCAGGCATGGTACAGGAGGAGCAGAGAGTT  694

seq1  CTGTGTCTTCTTCTGAAGGCCCCTAGAAGAAGTCTGACTAAGGCACTTGG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCTTCTTCTGAAGGCCCCTAGAAGAAGTCTGACTAAGGCACTTGG  744

seq1  CAGAGCTTCAAAGCCCACTCCCAGAGTGGCATACTTCCTCCAACAAGACT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTTCAAAGCCCACTCCCAGAGTGGCATACTTCCTCCAACAAGACT  794

seq1  ACACCTACTCCAACAAGGCCACACCTCCAAATAGTGCTACTCCCTGGGCC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTACTCCAACAAGGCCACACCTCCAAATAGTGCTACTCCCTGGGCC  844

seq1  AAGCATGGTCAAACCACCACAGTAGACCAAGCTGTCCTGAAACTCAGAGA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGGTCAAACCACCACAGTAGACCAAGCTGTCCTGAAACTCAGAGA  894

seq1  GATCTGCCTGCCTCTGCATTTCAAGTGCTGGGATTGAAGGTGTGGGTCCC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCCTGCCTCTGCATTTCAAGTGCTGGGATTGAAGGTGTGGGTCCC  944

seq1  CTCCTTCCTCTTCTGAGGTCTAGTCCTGCCAGAGTTGGAAACAAAGGATG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCCTCTTCTGAGGTCTAGTCCTGCCAGAGTTGGAAACAAAGGATG  994

seq1  ATTCCTGGGGGGAAGGGGGTTTCCATGGTGACAGGTGGCTTCTCAGCTCT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGGGGGGAAGGGGGTTTCCATGGTGACAGGTGGCTTCTCAGCTCT  1044

seq1  GGGGGACACCCTTAAACTTGATGGGATGTAGGAGGTGGCCTGATGGCACA  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGACACCCTTAAACTTGATGGGATGTAGGAGGTGGCCTGATGGCACA  1094

seq1  CAGAGGCCTGTTGTCCCAGCTACTACAGGGACTGAGAATTC  1130
      |||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCCTGTTGTCCCAGCTACTACAGGGACTGAGAATTC  1135

seq1: chr10_80888000_80888152
seq2: B6Ng01-129P21.g_73_225

seq1  AGGGGACTCTTGAGATCCCATGGGGGACTCCCTCAGGGTAGGAGGGGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGACTCTTGAGATCCCATGGGGGACTCCCTCAGGGTAGGAGGGGGTG  50

seq1  AGTGGGAGATCACAGGGGTGGCATCCTTCCTGCCAGATCGACCCACACCC  100
      |||||||||||||||||||||||||||||||||| ||||||||||| | |
seq2  AGTGGGAGATCACAGGGGTGGCATCCTTCCTGCCCGATCGACCCACTCTC  100

seq1  TCCTATGGGGGAAACTGAGGCCAAGGCCACACTAAGTCCTCAGGGCTGGA  150
      | |||||||||| | | ||||||||| |||| || ||  ||| |||||||
seq2  TTCTATGGGGGATATTCAGGCCAAGGACACATTATGTTTTCATGGCTGGA  150

seq1  GCC  153
      |||
seq2  GCC  153