BAC Information

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BAC

Clone NameB6Ng01-130D14
Chromosome10 (Build37)
Map Location 39,805,238 - 39,972,295
singlet/doubletdoublet
Overlap geneSlc16a10, Bxdc1, 2410016F19Rik
Upstream geneLama4, 1700025K23Rik, Tube1, EG624165, LOC100040964, Fyn, LOC629337, Traf3ip2, LOC667964, EG667970, E130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342
Downstream geneAmd1, Amd2, LOC668051, Cdc2l6, LOC666374, Slc22a16, Ddo, 9030224M15Rik, Cdc40, Wasf1, Gpr6, A530089I17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130D14.bB6Ng01-130D14.g
ACCDH931593DH931594
length1,174488
definitionDH931593|Mus musculus domesticus DNA, BAC clone: B6Ng01-130D14, 5' end.DH931594|Mus musculus domesticus DNA, BAC clone: B6Ng01-130D14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,971,085 - 39,972,295)(39,805,238 - 39,805,731)
sequence
gaattcagtccctaccacagttcactgagcaagatactttttgtttttgg
aagcagcctcagcacggtgtgaactagcattgaccatgtatcccaggctg
cacataaatgtgcagttctagtacagtcatagcctcccaaggccaggata
ggtaccattttcatgttcattcatacttggaaaaactgaaccccgggggc
caataacactttgagattcacaggggagtgagtggcacggtcagtgcttg
ggtttagcctggcttcagggctcacattcatttcctcttggtgatgttgg
ggatcaaacatagcaaaggagctgtgcatgccctctccctggctgacttc
agacttgtgatcctcctgtctcaactctgagtgcttcattgcacaaccat
tcctgtcttaaatggtcttcactgtactgaattcactatgaaaatgctgc
cgtgcattctttatgtgtatcttcgtgtgtataggcaatgatgtctccaa
actttatatctagactagattgatgagctggggaaaggaatagatttaag
aagaggccggggttcagctcccctctagaacattcccttagcacacgtgt
gaggccccagccacaattacccaactcaagagggaggaggagagtcaaag
tggagtgtgtcatcttcaactaacttcgctcgatgtgtagtaggagccaa
cacttggccgagcgggggtgtggaagtttctggtgtttcccgtcgttggt
ccagagtcttagtccctaacccgtctgggcccacggtcttttagttaaaa
gttgttcttggaccaatatttagcagtttctttttcccctcagtttacct
aattgagaacatccccactcaagcattgagcttcaagaagacatttgatt
ctgatccttcatttgggcgataggactgtagacacagtgctctgcgggca
actcctaagcccatttccatgtaaggaccctacttgtgcgttagtctctg
tgttacgttgctctgtcttagagtttttggtgtgagacctattgtgctca
aatgtcatgttatctgctttcttgacctgggaatgaagtgacaattgcag
gggactcctggctgtcctaaggaagttagaacaactcctacatctgaggg
ctgaaggcgatataagatcatttc
aagcccttggactcagtttgcaactcagctggtaaagtggctctcaagca
ccaagccctggggttgtccccagaactgcatgcgccagggtgatgacaca
cacctgtaactctagcactccgcagataagagacaggagagtcattattt
caagagcatcttcagctatgtggctagtttaagacccacccgagaaacaa
attgctctatctcatcttctcatctcaacaaaaaaaaaaaaaaaaaaaaa
aaaaggaaactctagggctaggagctggaggaaaagatggcatagccatt
ccagcactccagcctggcctacaaagcaagttccaggagagagagagggg
gtggggggagaatatctgccattctgttgatttgtagtgctgggtctttt
atcttcctctcctgctgtattactctgctgtactcttccctgtggcttca
cggatgattctgtttttctctttagtctgaaggattct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_39971085_39972295
seq2: B6Ng01-130D14.b_48_1221 (reverse)

seq1  GAAATGATCTTATTATACCGCTTCATGCCATCAGATGTTGAGGGAGTTAG  50
      |||||||||||| ||| |  ||||| ||| ||||||||    ||||||  
seq2  GAAATGATCTTA-TAT-CGCCTTCA-GCCCTCAGATGT---AGGAGTTGT  44

seq1  TCTCAACTACTTCCTATGGGAACAGCACAGGAAGTTCCCACTGCAATTGA  100
      |||     |||||||  ||  ||||| |||| |||  || ||||||||| 
seq2  TCT----AACTTCCTTAGG--ACAGC-CAGG-AGT--CCCCTGCAATTG-  83

seq1  TCACTCCTGTCCCACGTGCAAAGAAATGACAGATAACACTGACATTTGAA  150
      ||||| |  ||||| ||   ||||||   ||||||||| |||||||||| 
seq2  TCACTTCATTCCCAGGT--CAAGAAA--GCAGATAACA-TGACATTTGA-  127

seq1  GGCACAATAGGTCTCACACACAAAAAACTCTAAGGACAGAGACACGTAAA  200
       |||||||||||||  ||||| ||||||||||| |||||||  |||| ||
seq2  -GCACAATAGGTCT--CACACCAAAAACTCTAA-GACAGAGCAACGT-AA  172

seq1  CACAGAGACTAACGCAACAAGGTAGGGTTCCTAACATGGGAAATGGGGCT  250
      ||||||||||||||| |||| |||||| |||| |||| |||||| |||||
seq2  CACAGAGACTAACGC-ACAA-GTAGGG-TCCTTACAT-GGAAAT-GGGCT  217

seq1  TAGGAGTTGGCCCGCAGAGCACTGTGTCTACAGTCCTATCGCCCAAATGA  300
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTT-GCCCGCAGAGCACTGTGTCTACAGTCCTATCGCCCAAATGA  266

seq1  AGGATCAGAATCAAATGTCCTTCTTGAAGCTCAATGCTTGAGTGGGGATG  350
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGGATCAGAATCAAATGT-CTTCTTGAAGCTCAATGCTTGAGTGGGGATG  315

seq1  TTCTCAATTAGGTAAACCTGAGGGGAAAAAGAAAACTGCTAAATATTGGT  400
      |||||||||||||||| |||||||||||||| ||||||||||||||||||
seq2  TTCTCAATTAGGTAAA-CTGAGGGGAAAAAG-AAACTGCTAAATATTGGT  363

seq1  CCAAGAACAACTTTTAACTAAAAGACCGTGGGCCCAGACGGGTTAGGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAACAACTTTTAACTAAAAGACCGTGGGCCCAGACGGGTTAGGGAC  413

seq1  TAAGACTCTGGACCAACGACGGGAAACACCAGAAACTTCCACACCCCCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTCTGGACCAACGACGGGAAACACCAGAAACTTCCACACCCCCGC  463

seq1  TCGGCCAAGTGTTGGCTCCTACTACACATCGAGCGAAGTTAGTTGAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCCAAGTGTTGGCTCCTACTACACATCGAGCGAAGTTAGTTGAAGAT  513

seq1  GACACACTCCACTTTGACTCTCCTCCTCCCTCTTGAGTTGGGTAATTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACTCCACTTTGACTCTCCTCCTCCCTCTTGAGTTGGGTAATTGTG  563

seq1  GCTGGGGCCTCACACGTGTGCTAAGGGAATGTTCTAGAGGGGAGCTGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGCCTCACACGTGTGCTAAGGGAATGTTCTAGAGGGGAGCTGAAC  613

seq1  CCCGGCCTCTTCTTAAATCTATTCCTTTCCCCAGCTCATCAATCTAGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGCCTCTTCTTAAATCTATTCCTTTCCCCAGCTCATCAATCTAGTCT  663

seq1  AGATATAAAGTTTGGAGACATCATTGCCTATACACACGAAGATACACATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATAAAGTTTGGAGACATCATTGCCTATACACACGAAGATACACATA  713

seq1  AAGAATGCACGGCAGCATTTTCATAGTGAATTCAGTACAGTGAAGACCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGCACGGCAGCATTTTCATAGTGAATTCAGTACAGTGAAGACCAT  763

seq1  TTAAGACAGGAATGGTTGTGCAATGAAGCACTCAGAGTTGAGACAGGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACAGGAATGGTTGTGCAATGAAGCACTCAGAGTTGAGACAGGAGG  813

seq1  ATCACAAGTCTGAAGTCAGCCAGGGAGAGGGCATGCACAGCTCCTTTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAGTCTGAAGTCAGCCAGGGAGAGGGCATGCACAGCTCCTTTGCT  863

seq1  ATGTTTGATCCCCAACATCACCAAGAGGAAATGAATGTGAGCCCTGAAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGATCCCCAACATCACCAAGAGGAAATGAATGTGAGCCCTGAAGC  913

seq1  CAGGCTAAACCCAAGCACTGACCGTGCCACTCACTCCCCTGTGAATCTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTAAACCCAAGCACTGACCGTGCCACTCACTCCCCTGTGAATCTCA  963

seq1  AAGTGTTATTGGCCCCCGGGGTTCAGTTTTTCCAAGTATGAATGAACATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTATTGGCCCCCGGGGTTCAGTTTTTCCAAGTATGAATGAACATG  1013

seq1  AAAATGGTACCTATCCTGGCCTTGGGAGGCTATGACTGTACTAGAACTGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGTACCTATCCTGGCCTTGGGAGGCTATGACTGTACTAGAACTGC  1063

seq1  ACATTTATGTGCAGCCTGGGATACATGGTCAATGCTAGTTCACACCGTGC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTATGTGCAGCCTGGGATACATGGTCAATGCTAGTTCACACCGTGC  1113

seq1  TGAGGCTGCTTCCAAAAACAAAAAGTATCTTGCTCAGTGAACTGTGGTAG  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTGCTTCCAAAAACAAAAAGTATCTTGCTCAGTGAACTGTGGTAG  1163

seq1  GGACTGAATTC  1211
      |||||||||||
seq2  GGACTGAATTC  1174

seq1: chr10_39805238_39805731
seq2: B6Ng01-130D14.g_69_562

seq1  GAATTCAAGCCCTTGGACTCAGTTTGCAACTCAGCTGGTAAAGTGGCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCCCTTGGACTCAGTTTGCAACTCAGCTGGTAAAGTGGCTCT  50

seq1  CAAGCACCAAGCCCTGGGGTTGTCCCCAGAACTGCATGCGCCAGGGTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACCAAGCCCTGGGGTTGTCCCCAGAACTGCATGCGCCAGGGTGAT  100

seq1  GACACACACCTGTAACTCTAGCACTCCGCAGATAAGAGACAGGAGAGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACACCTGTAACTCTAGCACTCCGCAGATAAGAGACAGGAGAGTCA  150

seq1  TTATTTCAAGAGCATCTTCAGCTATGTGGCTAGTTTAAGACCCACCCGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCAAGAGCATCTTCAGCTATGTGGCTAGTTTAAGACCCACCCGAG  200

seq1  AAACAAATTGCTCTATCTCATCTTCTCATCTCAACAAAAAAAAAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATTGCTCTATCTCATCTTCTCATCTCAACAAAAAAAAAAAAAAA  250

seq1  AAAAAAAAAAGGAAACTCTAGGGCTAGGAGCTGGAGGAAAAGATGGCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAGGAAACTCTAGGGCTAGGAGCTGGAGGAAAAGATGGCATA  300

seq1  GCCATTCCAGCACTCCAGCCTGGCCTACAAAGCAAGTTCCAGGAGAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCCAGCACTCCAGCCTGGCCTACAAAGCAAGTTCCAGGAGAGAGA  350

seq1  GAGGGGGTGGGGGGAGAATATCTGCCATTCTGTTGATTTGTAGTGCTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGTGGGGGGAGAATATCTGCCATTCTGTTGATTTGTAGTGCTGGG  400

seq1  TCTTTTATCTTCCTCTCCTGCTGTATTACTCTGCTGTACTCTTCCCTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATCTTCCTCTCCTGCTGTATTACTCTGCTGTACTCTTCCCTGTG  450

seq1  GCTTCACGGATGATTCTGTTTTTCTCTTTAGTCTGAAGGATTCT  494
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCACGGATGATTCTGTTTTTCTCTTTAGTCTGAAGGATTCT  494