BAC Information

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BAC

Clone NameB6Ng01-130H15
Chromosome12 (Build37)10 (Build37)
Map Location 119,439,227 - 119,439,62897,333,792 - 97,335,035
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePtprn2, LOC432713, LOC100042461, Rapgef5, A930023M06Rik, Cdca7l, Dnahc11
Downstream geneSp4, LOC100042993, LOC668611, EG668615, LOC620665, Sp8, Abcb5, Itgb8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130H15.bB6Ng01-130H15.g
ACCDH931779DH931780
length1,0111,231
definitionDH931779|Mus musculus domesticus DNA, BAC clone: B6Ng01-130H15, 5' end.DH931780|Mus musculus domesticus DNA, BAC clone: B6Ng01-130H15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(119,439,227 - 119,439,628)(97,333,792 - 97,335,035)
sequence
gaattctcaactgaggaatatcgaatggctgagaagcacctgaaaaaatg
ttcaacatctttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaagagatagc
agatgttggcaaggatgtggagaaggaggaacactcctccattgttggtg
ggattgcaagctggtacaacactctgtaaatcagtctgatggttcctcag
aaaattggacatagtactaccagaggatccagcaacacctctcctgtgca
tacatccagaagatgttacaactggtaataaaaacacatgctccactatg
ttcatagcagccttatttataacagccagaatctgtaaagaacccagata
tctctctgcttttctttactcctgaccattgactctcaatagcttactct
caatatccctcttccaaaaccccattgtctatgagtgactctagtctaga
catcccatactctcatttctgtgatgttagttcacttgaagagatgttta
aaacttgctggcttaatgtcctgttcctcttttctggtaaaatccttggc
acagagcatcaacaggatggaagttaaagtggaccacatcccttgtagta
acttcctggctttattagcatgatgctaggtggcacaactatatttgatt
ttctaatttcatatacaatagtggaatatctaggaacaatgttgagtctt
ttcttaaaaaaatattatttaataaatgattatgttaaactcaatatttc
tttttccctttgaaaaatattttctgtgtttggtctatatgtgtggagat
gtgtatgttgagtttatgtgtccttatgtggaggatggaagagaaaatca
tccactatcactccccctacccttacatcctgagacaacataccttactg
gagccaggaactcatattttgggtaggttggtgggcagcaaaaccaggga
aactatctcct
gaattccaatctcagtaatagtaacattgtggtaaatgcaggagttctaa
ttttccactttactgttgcaaagaacacaattgtagagaaataacatatc
ttttgatttatagctctggatttaaggacacttgagccttctagaaaaat
catgtcggaatgtctttaatctattattttttttcttataaatagattct
tctctcatacaatccattctgactacagttttctctccacccactcttcc
ccaatctccctcattcctaaatccactgtcttttgtttcctttccaggaa
aatgaaggcctctaagagatgacagccaaacaagatacaataccacaggg
tgaagctcttatatctagactagacaagacaagccaatgggaggaaatgg
gtcccaagagcaagtaagagtcagagatacagcaggttcatagattgaca
gccagacatcatgtagagagacaatgtaaatcggaagtctccattgggat
atctattatacttgcaagaaaaatataccttctctaagtgtaaagtattc
ttcggttggtaaaacactagttttatgaaaggtactatttatgttacaag
tgatagaaaaaaattcatggagaccaaatttagtaccctatcgtaaatat
cttattcatgagatagtataaataattatacatgttaatgtttacaatga
accaaggaattaatgatttcttaggcacatagaaaagattcattgagtcc
aagtatcagaaagaatatgggataaagcaggacacgggaaataagattgt
ctagagctagaccctggctgatgagagacctttacctctgcattcagaaa
tgtttattattgtaacaaaatatcctaggtaaaaatatcttcaaagattg
atattggctctcagttgtagaggtcttgtgtttacttggtaatactgttt
tggggcaaattgccaggcaactcatcatggcttgagcacatatcctttac
attaatggtggtaggaggcaaagaaataagtagaaagactgaagattcca
taaatactttctatatattccatggacttagaaacttcttaaacagtagg
agcaaagattgtttcctcctttctttcaatattcattcacttaagccata
tgagctctctcctacattcaagtcaatcctttagatctccgttaacaaca
ttcgttactctctgagaatagagaaggagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_119439227_119439628
seq2: B6Ng01-130H15.b_43_441 (reverse)

seq1  ATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAAC  50
      ||||||||||||| ||| |||||||| |||||||||||||||||||||||
seq2  ATCTGGGTTCTTTACAGATTCTGGCTGTTATAAATAAGGCTGCTATGAAC  50

seq1  ATAGTGGAGCATGTGTCCTTCTTAACAGTTGGAACATCTTCTGGATATAT  100
      ||||||||||||||||  || ||| |||||| |||||||||||||| |||
seq2  ATAGTGGAGCATGTGTTTTTATTACCAGTTGTAACATCTTCTGGATGTAT  100

seq1  GCCCAGGAGAGGCATTGCGGGATCCTCCGGTAGTACTATGTCCAATTTTC  150
      || |||||||||  |||| |||||||| ||||||||||||||||||||||
seq2  GCACAGGAGAGGTGTTGCTGGATCCTCTGGTAGTACTATGTCCAATTTTC  150

seq1  TGAGGAACCGCCAGACTGATTTCCAGAGTGGTTGTACCAGCTTGCAATCC  200
      |||||||||  ||||||||||| |||||| ||||||||||||||||||||
seq2  TGAGGAACCATCAGACTGATTTACAGAGT-GTTGTACCAGCTTGCAATCC  199

seq1  CACCAACAATGGAGGAGTGTTCCTCTTTCTTCACATCCTTGCCAGCATCT  250
      ||||||||||||||||||||||||| |||| ||||||||||||| |||||
seq2  CACCAACAATGGAGGAGTGTTCCTCCTTCTCCACATCCTTGCCAACATCT  249

seq1  GCTGTCACCTGAATTTTTGATCCTAGCCATTCTGACTGGTGTGAGGTGGA  300
      ||| || | ||||||||||||| |||||||||||||||||||||||||||
seq2  GCTATCTCTTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGA  299

seq1  ATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAAGATGTTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAAGATGTTGAA  349

seq1  CATTTTTTTTCAAGTGCTTCTCAGCCCTTCGGTATTCCTCAGTTGAGAAT  400
      ||  |||||||| ||||||||||||| |||| ||||||||||||||||||
seq2  CA--TTTTTTCAGGTGCTTCTCAGCCATTCGATATTCCTCAGTTGAGAAT  397

seq1  TC  402
      ||
seq2  TC  399

seq1: chr10_97333792_97335035
seq2: B6Ng01-130H15.g_68_1298

seq1  GAATTCCAATCTCAGTAATAGTAACATTGTGGTAAATGCAGGAGTTCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATCTCAGTAATAGTAACATTGTGGTAAATGCAGGAGTTCTAA  50

seq1  TTTTCCACTTTACTGTTGCAAAGAACACAATTGTAGAGAAATAACATATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCACTTTACTGTTGCAAAGAACACAATTGTAGAGAAATAACATATC  100

seq1  TTTTGATTTATAGCTCTGGATTTAAGGACACTTGAGCCTTCTAGAAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATTTATAGCTCTGGATTTAAGGACACTTGAGCCTTCTAGAAAAAT  150

seq1  CATGTCGGAATGTCTTTAATCTATTATTTTTTTTCTTATAAATAGATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCGGAATGTCTTTAATCTATTATTTTTTTTCTTATAAATAGATTCT  200

seq1  TCTCTCATACAATCCATTCTGACTACAGTTTTCTCTCCACCCACTCTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCATACAATCCATTCTGACTACAGTTTTCTCTCCACCCACTCTTCC  250

seq1  CCAATCTCCCTCATTCCTAAATCCACTGTCTTTTGTTTCCTTTCCAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCTCCCTCATTCCTAAATCCACTGTCTTTTGTTTCCTTTCCAGGAA  300

seq1  AATGAAGGCCTCTAAGAGATGACAGCCAAACAAGATACAATACCACAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGGCCTCTAAGAGATGACAGCCAAACAAGATACAATACCACAGGG  350

seq1  TGAAGCTCTTATATCTAGACTAGACAAGACAAGCCAATGGGAGGAAATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTCTTATATCTAGACTAGACAAGACAAGCCAATGGGAGGAAATGG  400

seq1  GTCCCAAGAGCAAGTAAGAGTCAGAGATACAGCAGGTTCATAGATTGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAAGAGCAAGTAAGAGTCAGAGATACAGCAGGTTCATAGATTGACA  450

seq1  GCCAGACATCATGTAGAGAGACAATGTAAATCGGAAGTCTCCATTGGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGACATCATGTAGAGAGACAATGTAAATCGGAAGTCTCCATTGGGAT  500

seq1  ATCTATTATACTTGCAAGAAAAATATACCTTCTCTAAGTGTAAAGTATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTATACTTGCAAGAAAAATATACCTTCTCTAAGTGTAAAGTATTC  550

seq1  TTCGGTTGGTAAAACACTAGTTTTATGAAAGGTACTATTTATGTTACAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGTTGGTAAAACACTAGTTTTATGAAAGGTACTATTTATGTTACAAG  600

seq1  TGATAGAAAAAAATTCATGGAGACCAAATTTAGTACCCTATCGTAAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGAAAAAAATTCATGGAGACCAAATTTAGTACCCTATCGTAAATAT  650

seq1  CTTATTCATGAGATAGTATAAATAATTATACATGTTAATGTTTACAATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCATGAGATAGTATAAATAATTATACATGTTAATGTTTACAATGA  700

seq1  ACCAAGGAATTAATGATTTCTTAGGCACATAGAAAAGATTCATTGAGTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGAATTAATGATTTCTTAGGCACATAGAAAAGATTCATTGAGTCC  750

seq1  AAGTATCAGAAAGAATATGGGATAAAGCAGGACACGGGAAATAAGATTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATCAGAAAGAATATGGGATAAAGCAGGACACGGGAAATAAGATTGT  800

seq1  CTAGAGCTAGACCCTGGCTGATGAGAGACCTTTACCTCTGCATTCAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTAGAGCTAGACCCTGGCTGATGAGAGACCTTTACCTCTGCATTCAG-AA  849

seq1  ATGTTTATTAATGTAACAAAATATCCTAGGTAAAAATATCTTCAAAGATT  900
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATTATTGTAACAAAATATCCTAGGTAAAAATATCTTCAAAGATT  899

seq1  GATATTGGCTCTCAGTTGTAGAGGTCTTGTGTTTACTTGGTAATACTGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGGCTCTCAGTTGTAGAGGTCTTGTGTTTACTTGGTAATACTGTT  949

seq1  TTGGGGCCAAATGCCAGGCAACTCATCATGGCTTGAGCACATATCCTTTA  1000
      ||||||| || |||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCAAATTGCCAGGCAACTCATCATGGCTTGAGCACATATCCTTTA  999

seq1  CATT-ATGGTGGTTAGGAGGCAAAGAAATAAAGTAGAAAAGACTG-AGAT  1048
      |||| ||||||| |||||||||||||||| |||||| |||||||| ||||
seq2  CATTAATGGTGG-TAGGAGGCAAAGAAAT-AAGTAG-AAAGACTGAAGAT  1046

seq1  CCCATAATAACTTTCTAATATAATTCCAATGACCTAGAAAC-TCTT-AGC  1096
       ||||||  ||||||| |||| ||||||  ||| ||||||| |||| | |
seq2  TCCATAAATACTTTCT-ATAT-ATTCCATGGACTTAGAAACTTCTTAAAC  1094

seq1  AGTAGGAGCAAAGATTGGTTTTCTTCTTTTCTTTCATTATTTCATTCACT  1146
      |||||||||||||||||  |||| || ||||||||| || ||||||||||
seq2  AGTAGGAGCAAAGATTG--TTTCCTCCTTTCTTTCAATA-TTCATTCACT  1141

seq1  TTATAGCCCATTATGAGTCTCTCT-CTACTTTCAGTCCCATCTCTTATGG  1195
      |   ||||   |||||| |||||| |||| ||||   | |||  |||  |
seq2  T--AAGCC--ATATGAG-CTCTCTCCTACATTCAAGTCAATCCTTTA--G  1184

seq1  ATCCTCCCCCTGTTTACCAC-TCCCTTTCTCCTCTGAGAA---GGAAGGA  1241
      || ||||    ||| || || | | || || |||||||||    ||||||
seq2  AT-CTCC----GTTAACAACATTCGTTACT-CTCTGAGAATAGAGAAGGA  1228

seq1  GTG  1244
      |||
seq2  GTG  1231