BAC Information

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BAC

Clone NameB6Ng01-130H18
Chromosome10 (Build37)
Map Location 61,333,880 - 61,527,587
singlet/doubletdoublet
Overlap geneCol13a1, EG436164
Upstream genePcbd1, Sgpl1, 1700021K02Rik, Adamts14, Prf1, EG237361, X99384, Nodal, Eif4ebp2, D830039M14Rik, Lrrc20, Npffr1, Ppa1, Sar1a, Tysnd1, Aifm2, H2afy2, LOC100039284
Downstream geneEG432466, 2010107G23Rik, Neurog3, Tspan15, Tacr2, Hk1, 2210417K05Rik, Hkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1, Cxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130H18.bB6Ng01-130H18.g
ACCDH931785DH931786
length9311,069
definitionDH931785|Mus musculus domesticus DNA, BAC clone: B6Ng01-130H18, 5' end.DH931786|Mus musculus domesticus DNA, BAC clone: B6Ng01-130H18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,526,659 - 61,527,587)(61,333,880 - 61,334,955)
sequence
gaattctccctaggtccccttccctcagccattccctctgacatcttggg
attgttgttgtttgttttgttttttgtttggttttgagttttttcgtttg
tttgtttgtttaaagattgatttatttcatgtatgtgagtacactgtcac
tgtcttcagacacaccagaagatggcatcggatccccattacagatggtt
gtgagatggatgtggcttctgggaattgaagtcaggacctctggaagagc
agtcagtgttcttaatggctgagccatctctctagcccctgttttgtttt
ttgttttttttagtaatctctcttggggcctgaggggatggctcagtcaa
tttaaaagtgcttgtcttgcaagcataacatcctgagttcaactcctaga
attcatgtaaagactcttaagtatggtggcacacatgggtaaccccaatg
ctggagaggtgaagacaggcctgtctctggggctcacctgtgagccagtc
taccctactgggagatcttgggcctgtgagagatcttcttttacaataaa
gtggatggtgcttgaggaacaacacctgagactggcctctggtatctgca
tgtgcacacgtgtgcatgtgcatctacaaacatacatatatctgcaaaca
tctgcatatacatgtgtgtatggaacctcaaactctctctctccctgtct
ctctctgtctctctctctctcttgcacacacacacagacatacacacaca
cacacacacacagagagagagagagagagagactctgacccaaagaaccc
ccaggaaatagctatcagtggatgatagctcagtggtcccttttctaaaa
tgggttcactatattagcagaagggggtggttggtgaaaattcaggggtc
agcggaggggttaatggggtgagatttgagg
gaattctacagactggtgcactcatgggccctgcctgtgtaaagcatacc
tcaatcttgctatactctggccactttcccctactctgggaatatgtaag
tccagggggacaccaaggcttgcagggagtccaccatcgaaaatgtgagt
ccacctaccttctgccccaggaggccaggggagcctgctgcacccttctc
accctgcagggagggggagaactgggttaagaacaacctcttcagacatc
tgggaggccacacccctaccctcttagtgcatggctcccctggagggaga
agaaacacagccacagcccactgctgagttctgctctccccagggcgggg
aatggggctggaagtgggtacaggaagagcagtatagaaagccagaggtt
gggaactcccctttgaatccactctgctcttcatgtctgtcccccctgta
ttgtgctcatctcttttgtccacctcttcctgcctttagacagcacccat
ccaaccagaaagtcctttttgagaagttgtgtcacaggtcaaattgtgtt
ccagcaaagtttggtgttgaagtcctagcttctagtacgtcagaaaaatg
accttttttattttacttttttccttttgtggaaacagggtcatcgaaga
tcagttaagatcagatatgaaagcgatcatgctggagtagattgaaccca
gtgttcccaggactttatagggcagggaaagtctggagaccggcagcaga
cagacacagacacagacacagacagacacacagacgctatgtgaagtaga
tgaggtgaggcttctacaagcagagggaacatgataatagtcaaaccact
caagaggcaaagccctcagatggcgccccttctcccctgcttttgggctt
ctggcctctaggtctgagagaggatgcaagctttactatttatacactcc
gtctgggtcgccggtgcagctctgtccaataccaagggaactcagctatc
gattcccaaggcacagatcactgattctggaaggtagatgacctagcttc
ctttacaggtagagtcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_61526659_61527587
seq2: B6Ng01-130H18.b_51_981 (reverse)

seq1  CCTCAAATCTCACCCCATTAACCCCTCCGCTGACCCCTGAATTTTCACC-  49
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCTCAAATCTCACCCCATTAACCCCTCCGCTGACCCCTGAATTTTCACCA  50

seq1  ACCACCCCCATTCTGCTAATATAGTGAA-CCATTTTAG-AAAGGGACCAC  97
      ||||||||| |||||||||||||||||| ||||||||| |||||||||||
seq2  ACCACCCCC-TTCTGCTAATATAGTGAACCCATTTTAGAAAAGGGACCAC  99

seq1  TGAGCTATCATCCACTGATAGCTATTTCCTGGGGGTTCTTTGGGTCAGAG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTATCATCCACTGATAGCTATTTCCTGGGGGTTCTTTGGGTCAGAG  149

seq1  TCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTATGTCTGTG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTATGTCTGTG  199

seq1  TGTGTGTGCAAGAGAGAGAGAGAGACAGAGAGAGACAGGGAGAGAGAGAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGCAAGAGAGAGAGAGAGACAGAGAGAGACAGGGAGAGAGAGAG  249

seq1  TTTGAGGTTCCATACACACATGTATATGCAGATGTTTGCAGATATATGTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGTTCCATACACACATGTATATGCAGATGTTTGCAGATATATGTA  299

seq1  TGTTTGTAGATGCACATGCACACGTGTGCACATGCAGATACCAGAGGCCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTAGATGCACATGCACACGTGTGCACATGCAGATACCAGAGGCCA  349

seq1  GTCTCAGGTGTTGTTCCTCAAGCACCATCCACTTTATTGTAAAAGAAGAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGGTGTTGTTCCTCAAGCACCATCCACTTTATTGTAAAAGAAGAT  399

seq1  CTCTCACAGGCCCAAGATCTCCCAGTAGGGTAGACTGGCTCACAGGTGAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACAGGCCCAAGATCTCCCAGTAGGGTAGACTGGCTCACAGGTGAG  449

seq1  CCCCAGAGACAGGCCTGTCTTCACCTCTCCAGCATTGGGGTTACCCATGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGAGACAGGCCTGTCTTCACCTCTCCAGCATTGGGGTTACCCATGT  499

seq1  GTGCCACCATACTTAAGAGTCTTTACATGAATTCTAGGAGTTGAACTCAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACCATACTTAAGAGTCTTTACATGAATTCTAGGAGTTGAACTCAG  549

seq1  GATGTTATGCTTGCAAGACAAGCACTTTTAAATTGACTGAGCCATCCCCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTATGCTTGCAAGACAAGCACTTTTAAATTGACTGAGCCATCCCCT  599

seq1  CAGGCCCCAAGAGAGATTACTAAAAAAAACAAAAAACAAAACAGGGGCTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCCCAAGAGAGATTACTAAAAAAAACAAAAAACAAAACAGGGGCTA  649

seq1  GAGAGATGGCTCAGCCATTAAGAACACTGACTGCTCTTCCAGAGGTCCTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGGCTCAGCCATTAAGAACACTGACTGCTCTTCCAGAGGTCCTG  699

seq1  ACTTCAATTCCCAGAAGCCACATCCATCTCACAACCATCTGTAATGGGGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAATTCCCAGAAGCCACATCCATCTCACAACCATCTGTAATGGGGA  749

seq1  TCCGATGCCATCTTCTGGTGTGTCTGAAGACAGTGACAGTGTACTCACAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGATGCCATCTTCTGGTGTGTCTGAAGACAGTGACAGTGTACTCACAT  799

seq1  ACATGAAATAAATCAATCTTTAAACAAACAAACAAACGAAAAAACTCAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAATAAATCAATCTTTAAACAAACAAACAAACGAAAAAACTCAAA  849

seq1  ACCAAACAAAAAACAAAACAAACAACAACAATCCCAAGATGTCAGAGGGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACAAAAAACAAAACAAACAACAACAATCCCAAGATGTCAGAGGGA  899

seq1  ATGGCTGAGGGAAGGGGACCTAGGGAGAATTC  929
      ||||||||||||||||||||||||||||||||
seq2  ATGGCTGAGGGAAGGGGACCTAGGGAGAATTC  931

seq1: chr10_61333880_61334955
seq2: B6Ng01-130H18.g_71_1139

seq1  GAATTCTACAGACTGGTGCACTCATGGGCCCTGCCTGTGTAAAGCATACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAGACTGGTGCACTCATGGGCCCTGCCTGTGTAAAGCATACC  50

seq1  TCAATCTTGCTATACTCTGGCCACTTTCCCCTACTCTGGGAATATGTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTTGCTATACTCTGGCCACTTTCCCCTACTCTGGGAATATGTAAG  100

seq1  TCCAGGGGGACACCAAGGCTTGCAGGGAGTCCACCATCGAAAATGTGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGGGACACCAAGGCTTGCAGGGAGTCCACCATCGAAAATGTGAGT  150

seq1  CCACCTACCTTCTGCCCCAGGAGGCCAGGGGAGCCTGCTGCACCCTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTACCTTCTGCCCCAGGAGGCCAGGGGAGCCTGCTGCACCCTTCTC  200

seq1  ACCCTGCAGGGAGGGGGAGAACTGGGTTAAGAACAACCTCTTCAGACATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCAGGGAGGGGGAGAACTGGGTTAAGAACAACCTCTTCAGACATC  250

seq1  TGGGAGGCCACACCCCTACCCTCTTAGTGCATGGCTCCCCTGGAGGGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCCACACCCCTACCCTCTTAGTGCATGGCTCCCCTGGAGGGAGA  300

seq1  AGAAACACAGCCACAGCCCACTGCTGAGTTCTGCTCTCCCCAGGGCGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACACAGCCACAGCCCACTGCTGAGTTCTGCTCTCCCCAGGGCGGGG  350

seq1  AATGGGGCTGGAAGTGGGTACAGGAAGAGCAGTATAGAAAGCCAGAGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGCTGGAAGTGGGTACAGGAAGAGCAGTATAGAAAGCCAGAGGTT  400

seq1  GGGAACTCCCCTTTGAATCCACTCTGCTCTTCATGTCTGTCCCCCCTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTCCCCTTTGAATCCACTCTGCTCTTCATGTCTGTCCCCCCTGTA  450

seq1  TTGTGCTCATCTCTTTTGTCCACCTCTTCCTGCCTTTAGACAGCACCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTCATCTCTTTTGTCCACCTCTTCCTGCCTTTAGACAGCACCCAT  500

seq1  CCAACCAGAAAGTCCTTTTTGAGAAGTTGTGTCACAGGTCAAATTGTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCAGAAAGTCCTTTTTGAGAAGTTGTGTCACAGGTCAAATTGTGTT  550

seq1  CCAGCAAAGTTTGGTGTTGAAGTCCTAGCTTCTAGTACGTCAGAAAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAAGTTTGGTGTTGAAGTCCTAGCTTCTAGTACGTCAGAAAAATG  600

seq1  ACCTTTTTTATTTTACTTTTTTCCTTTTGTGGAAACAGGGTCATCGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTTTATTTTACTTTTTTCCTTTTGTGGAAACAGGGTCATCGAAGA  650

seq1  TCAGTTAAGATCAGATATGAAAGCGATCATGCTGGAGTAGATTGAACCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTAAGATCAGATATGAAAGCGATCATGCTGGAGTAGATTGAACCCA  700

seq1  GTGTTCCCAGGACTTTATAGGGCAGGG-AAGTCTGGAGACCGGCAGCAGA  749
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTGTTCCCAGGACTTTATAGGGCAGGGAAAGTCTGGAGACCGGCAGCAGA  750

seq1  CAGACACAGACACAGACACAGACAGACACACAGACGCTATGTGAAGTAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACAGACACAGACACAGACAGACACACAGACGCTATGTGAAGTAGA  800

seq1  TGAGGTGAGGCTTCTACAAGCAGAGGGAACATGATAATAGTCAAACCACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTGAGGCTTCTACAAGCAGAGGGAACATGATAATAGTCAAACCACT  850

seq1  CAAGAGGCAAAAGCCCTCAGATGGCGCCCCCTCCTCCCCTGCCTTTGGGC  899
      |||||||| ||||||||||||||||| ||||| ||||||||| |||||||
seq2  CAAGAGGC-AAAGCCCTCAGATGGCG-CCCCTTCTCCCCTGCTTTTGGGC  898

seq1  TTCTGGCCTCTAGGTCTGAGAGAGGATGCAAGCTTTACTATTTAATACAC  949
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTCTGGCCTCTAGGTCTGAGAGAGGATGCAAGCTTTACTATTT-ATACAC  947

seq1  TCCGTCTGGGTCGCCGGTGCAGCTCTGTCCAATACCAAGGG-ACTCAGCT  998
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCCGTCTGGGTCGCCGGTGCAGCTCTGTCCAATACCAAGGGAACTCAGCT  997

seq1  ATCGATCCCCAAGGCACAGATCACTGAATCCTGGAAGGGTTAGATGAACC  1048
      |||||| ||||||||||||||||||| || ||||||||  |||||||  |
seq2  ATCGATTCCCAAGGCACAGATCACTG-ATTCTGGAAGG--TAGATGA--C  1042

seq1  CAAGCTTCCTTTCACAGGTAGAGCCAGC  1076
      | |||||||||| |||||||||| ||||
seq2  CTAGCTTCCTTT-ACAGGTAGAGTCAGC  1069