BAC Information

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BAC

Clone NameB6Ng01-130K20
Chromosome10 (Build37)
Map Location 104,053,580 - 104,054,363
singlet/doubletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-130K20.bB6Ng01-130K20.g
ACCDH931932DH931933
length1,004975
definitionDH931932|Mus musculus domesticus DNA, BAC clone: B6Ng01-130K20, 5' end.DH931933|Mus musculus domesticus DNA, BAC clone: B6Ng01-130K20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttgttttacagatttttcacttccttagagtcacaccatgtat
tttatattatttgtgactattttgaagggtgttgtttctctattttcttt
tgcaaactgttcatgctttgtgtagtgaaaggtcacttatttgtttgagt
taattttatatccagctacatcactgaagctgtttatcaggtttaggagt
tctctggtggaatttttatgatcacttatatatattatcatatcatctgc
aaatagagatatttttgcttcttcctttccaatttgtacctgcttgactt
ccatttgttgtctaattgctctggctaggacttcgagtactatattgaat
aggtagggagaaagatggcagtcttgtctagttttttattttggtgggat
tgcttaaaacttctctccatttagtttgatgttatcttcttgtttgctgt
atattgcttataatatttttaagtaaggggcttgaattctttatctttcg
aagacttttattatgaatgggtgttggattttgtaaaatgttttctcagc
atctaacatgatgatcatctggtttctgtctttgagtttgtttatatata
tagtggattgcattgatggatttccatataataaaccacccctgcatccc
tggaatgaagcctacttgattatgatcgatgatcattttgatgtgttctt
ggattcggttggcaagaattttaatgagtaattttgcatctatatacatg
agggaaattgatctgaaattctcttttctttgttgggtctttatgtcgct
tagtatcagattaattgtggcttcatagaatgaatagggtagagtatttt
cttttgtgcaatagtgtgaggagatttggaattaggtcttttttgaatgt
ctgatagaattctgcactaaacccatcctgggtctgggctttttttggtt
gggagactattaatgactgcttctattttttttttaggatatgtgcgact
ggtt

gaattctcacctgagaaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaacactgagat
tccacttcactcttgtcagaatggctaagatcaaaaactcaggtgacagc
agatactggcgaggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaagaacacatgctccactat
gttcatagcagccttgtttataatagccagaagctggaaagaacccagat
gcctctcaacagaggaatggatacagaaaatgtggtacatttactcaatg
gagtactactcagctattaaaaataatgaatttatgaaattcctaggcaa
atggatgggcctggagagtatcatcctgagtgaagtaacccaatcacaaa
ggaactcgcacaatatgtactcttctacctttttggaatgttgatattcc
tctcaaaaaccattgaattaaaaaaaaattgctctttatttcttttcaaa
gatcacaaataccatttttatagctttcaatttcactttcattaccacca
atttttttttattttcaataaacatttaggaggatttgcttttttattgt
caacttgactggattagaatcacctaagttggtgccattgatcatctttg
aaagggcatttctagagagatggactggtcagacaaactactctcacagt
aggtaatatactccaattaaagaagtctggaggagaaaactgaagttctt
ctatgctgctgctttatcctaatgtcacagaggattctggctctcatgac
tcccgatgtaatcaaaaacagagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053580_104054363
seq2: B6Ng01-130K20.g_68_639 (reverse)

seq1  GAGTACATATTGCGCGAGTTCCTTTGTGATTGGGTTACCGCACTCAGGAT  50
      |||||||||||| |||||||||||||||||||||||||  ||||||||||
seq2  GAGTACATATTGTGCGAGTTCCTTTGTGATTGGGTTACTTCACTCAGGAT  50

seq1  GATACTCTCCAGGTCCATCCATTTGCCTAGGAATTTCATAAATTCATTCT  100
      ||||||||||||| |||||||||||||||||||||||||||||||||| |
seq2  GATACTCTCCAGGCCCATCCATTTGCCTAGGAATTTCATAAATTCATTAT  100

seq1  TTTTAATAGCTCCATTTACATTTAATTTAATTAATGTAATTACAATTAAT  150
      ||||||||||                                        
seq2  TTTTAATAGC----------------------------------------  110

seq1  TAATTTATTAATTAAATAATTTAATAATTTAATTGATAAATTAATTTAAT  200
                                                        
seq2  --------------------------------------------------  110

seq1  TAATTAATTTAATTAATTAAATTAAATAATAATTTAATAATAAATTAAAT  250
                                                        
seq2  --------------------------------------------------  110

seq1  ATTTTAAAATTAATAATAATTTTATAAGTAAATAATTTAATTAATGTAAT  300
                              | ||||                    
seq2  ------------------------TGAGTA--------------------  116

seq1  TTAATTAATGTAATTACATTACATTTAATAGCTCCATTGTGTAAATGTAC  350
               |||                   |||||||| ||||||||||
seq2  ---------GTA-------------------CTCCATTGAGTAAATGTAC  138

seq1  CACATTTTCTGTATCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCA  400
      ||||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  CACATTTTCTGTATCCATTCCTCTGTTGAGAGGCATCTGGGTTCTTTCCA  188

seq1  GCTCCTGGCTATTATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGT  450
      ||| |||||||||||||| |||||||||||||| ||||||||||||||||
seq2  GCTTCTGGCTATTATAAACAAGGCTGCTATGAACATAGTGGAGCATGTGT  238

seq1  CCTTCTTACCGGTTGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATT  500
       |||||||||||||||| |||||||||||||||||||||| |||||||||
seq2  TCTTCTTACCGGTTGGGACATCTTCTGGATATATGCCCAGGAGAGGTATT  288

seq1  GCTGGATCCTCCGGTAGTACTATGTCCAATTTTCTGACGAACCGCCAGAC  550
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCTGGATCCTCCGGTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGAC  338

seq1  GGATTTCCAGAGTGGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGA  600
       |||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGATTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACCAACAATGGAGGA  388

seq1  GTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTT  650
      ||||||| ||||||||||||||||||||| |||||||||||||||| |||
seq2  GTGTTCCCCTTTCTCCACATCCTCGCCAGTATCTGCTGTCACCTGAGTTT  438

seq1  TTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTT  700
      ||||||||||||||||||||  | |||| |||||||||||| ||||||||
seq2  TTGATCTTAGCCATTCTGACAAGAGTGAAGTGGAATCTCAGTGTTGTTTT  488

seq1  GATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCT  538

seq1  TCTCTGCCATTCGGTATTCCTCAGGTGAGAATTC  784
      |||||||||||||||||| |||||||||||||||
seq2  TCTCTGCCATTCGGTATTTCTCAGGTGAGAATTC  572


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