BAC Information

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BAC

Clone NameB6Ng01-131A08
Chromosome10 (Build37)
Map Location 83,052,360 - 83,223,397
singlet/doubletdoublet
Overlap geneA230046K03Rik, Appl2, 1500009L16Rik
Upstream geneLOC544716, 1190007I07Rik, Tdg, Glt8d2, Hcfc2, Nfyb, 1700028I16Rik, Txnrd1, Eid3, EG216185, Chst11, Slc41a2, D10Wsu102e, LOC666748, Aldh1l2
Downstream geneLOC100041225, C230099D08Rik, LOC432482, Nuak1, Ckap4, Tcp11l2, Polr3b, Rfx4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131A08.bB6Ng01-131A08.g
ACCDH932184DH932185
length1,129323
definitionDH932184|Mus musculus domesticus DNA, BAC clone: B6Ng01-131A08, 5' end.DH932185|Mus musculus domesticus DNA, BAC clone: B6Ng01-131A08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,052,360 - 83,053,494)(83,223,075 - 83,223,397)
sequence
gaattctccccacatttccttaacttagagattttatattcaggccatgg
tggggactgggaaagcattgatgagctttgtgaagtctggatttatagaa
aatcagtcatgtaatagactaagtgcagcacacagacatagtgtgctatt
ttttatgctttgtagtctaaatcttgagggcggtaaatataaatgagctg
ccaaaaaagattgcaatggatgttgataaagatctcacagattgtgacag
atgttttgcaggtagccactgctcactagtgttctaggggagctgtgacg
gcagaagggaagattgctttgttacagtgatttatgctttgaggaaaagt
aaagccatttctccgtcccttgtggctttgtgtttgacttagcgttagtt
agcctcttggaagattcaatgttttcactccaaactgtgcacatcacttc
tagtgagcactgtgccagggctaaggacccatggagggtccctctcgtaa
gaaagtcctcaggaggcacgcaaggacttgtgttctcaccaagagacagt
ttgcctgaggcacatgttcaggagctgagaagaaattctctttgtacttc
ttgaaatgcctgttatagcatctaaatttagctgattttgttagcttaat
tgtttttctgtatcttctctttttagactctgaactttgtagaacattct
ataagttgcaaagagaagttgaataaaaaaaataaactaggagctgcatt
tactgacgatggttttgccatgggtaagcgcaatagaactattttgccat
cgatttgtgtttcccttaaaatgggctcttaaaaaaattgcttgaaaatg
ggtttatgtgccttacagtagattatttttctcagcagcacctgctacca
gtgcgagcttttaaacatgggctttctgtcattcagctgtcattgaccca
ccacggagcttactgtctgtctgatttccccttcccttgggcttgctctg
ttgtggttttagttttacatcttacagttagttcattggggcctctgtaa
tgtcctcttttctgtcagtcagctttgggacgtttgcatcatgataagct
ttctccttcagcccccgccccgggttttc
tgtgtggggaaggggagggcactctattcaaataaatactagacttaaaa
aattccttggtgaattttcaggagctggggggtgaggggtggattccagt
ctttataaatctctatgctgcctctctgatgagccactccccagagaaca
attctaaggctgctgtgacttcccttaagaagtagaccctgcgtgtccca
gccctccagcaaggaaactactcagtctccatctggaaacttctcagtct
ctaccaactccaggactgacccgacaagagatgaccttgggaggggaggt
atatgaagaagaggttgggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_83052360_83053494
seq2: B6Ng01-131A08.b_43_1171

seq1  GAATTCTCCCCACATTTCCTTAACTTAGAGATCTTATATTCAGGCCATGG  50
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAATTCTCCCCACATTTCCTTAACTTAGAGATTTTATATTCAGGCCATGG  50

seq1  TGGGGACTGGGAAAGCATTGATGAGCTTTGTGAAGTCTGGATTTATAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACTGGGAAAGCATTGATGAGCTTTGTGAAGTCTGGATTTATAGAA  100

seq1  AATCAGTCATGTAATAGACTAAGTGCAGCACACAGACATAGTGTGCTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTCATGTAATAGACTAAGTGCAGCACACAGACATAGTGTGCTATT  150

seq1  TTTTATGCTTTGTAGTCTAAATCTTGAGGGCGGTAAATATAAATGAGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGCTTTGTAGTCTAAATCTTGAGGGCGGTAAATATAAATGAGCTG  200

seq1  CCAAAAAAGATTGCAATGGATGTTGATAAAGATCTCACAGATTGTGACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAAGATTGCAATGGATGTTGATAAAGATCTCACAGATTGTGACAG  250

seq1  ATGTTTTGCAGGTAGCCACTGCTCACTAGTGTTCTAGGGGAGCTGTGACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTGCAGGTAGCCACTGCTCACTAGTGTTCTAGGGGAGCTGTGACG  300

seq1  GCAGAAGGGAAGATTGCTTTGTTACAGTGATTTATGCTTTGAGGAAAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGGGAAGATTGCTTTGTTACAGTGATTTATGCTTTGAGGAAAAGT  350

seq1  AAAGCCATTTCTCCGTCCCTTGTGGCTTTGTGTTTGACTTAGCGTTAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCATTTCTCCGTCCCTTGTGGCTTTGTGTTTGACTTAGCGTTAGTT  400

seq1  AGCCTCTTGGAAGATTCAATGTTTTCACTCCAAACTGTGCACATCACTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTTGGAAGATTCAATGTTTTCACTCCAAACTGTGCACATCACTTC  450

seq1  TAGTGAGCACTGTGCCAGGGCTAAGGACCCATGGAGGGTCCCTCTCGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAGCACTGTGCCAGGGCTAAGGACCCATGGAGGGTCCCTCTCGTAA  500

seq1  GAAAGTCCTCAGGAGGCACGCAAGGACTTGTGTTCTCACCAAGAGACAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCCTCAGGAGGCACGCAAGGACTTGTGTTCTCACCAAGAGACAGT  550

seq1  TTGCCTGAGGCACATGTTCAGGAGCTGAGAAGAAATTCTCTTTGTACTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGAGGCACATGTTCAGGAGCTGAGAAGAAATTCTCTTTGTACTTC  600

seq1  TTGAAATGCCTGTTATAGCATCTAAATTTAGCTGATTTTGTTAGCTTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATGCCTGTTATAGCATCTAAATTTAGCTGATTTTGTTAGCTTAAT  650

seq1  TGTTTTTCTGTATCTTCTCTTTTTAGACTCTGAACTTTGTAGAACATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCTGTATCTTCTCTTTTTAGACTCTGAACTTTGTAGAACATTCT  700

seq1  ATAAGTTGCAAAGAGAAGTTGAATAAAAAAAATAAACTAGGAGCTGCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTGCAAAGAGAAGTTGAATAAAAAAAATAAACTAGGAGCTGCATT  750

seq1  TACTGACGATGGTTTTGCCATGGGTAAGCGCAATAGAACTATTTTGCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGACGATGGTTTTGCCATGGGTAAGCGCAATAGAACTATTTTGCCAT  800

seq1  CGATTTGTGTTTCCCTTAAAATGGGCTCTTAAAAAAATTGCTTGAAAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTTGTGTTTCCCTTAAAATGGGCTCTTAAAAAAATTGCTTGAAAATG  850

seq1  GGTTTATGTGCCTTACAGTAGATTATTTTTCTCAGCAGCACCTGCTACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATGTGCCTTACAGTAGATTATTTTTCTCAGCAGCACCTGCTACCA  900

seq1  GTGCGAGCTTTTAAACATGGCCTTTCTGTCATTCAGGCTGTCATTGACCC  950
      |||||||||||||||||||| |||||||||||||| ||||||||||| ||
seq2  GTGCGAGCTTTTAAACATGGGCTTTCTGTCATTCA-GCTGTCATTGA-CC  948

seq1  CACCACGGAGCTTACTGTCTGTCTGATTTCCCCTTCCCTTGGGCTTGCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACGGAGCTTACTGTCTGTCTGATTTCCCCTTCCCTTGGGCTTGCTC  998

seq1  TGTTGTGGTTTTAGTTTTACATCTTAACAGTTAGTTTCATTGGTGCCTCT  1050
      ||||||||||||||||||||||||| |||||||| |||||||| ||||||
seq2  TGTTGTGGTTTTAGTTTTACATCTT-ACAGTTAG-TTCATTGGGGCCTCT  1046

seq1  GTAATGTCCTCTTTTCTGTCAGTCAGCTTT-GGACGTTTGCATCATGAAT  1099
      |||||||||||||||||||||||||||||| |||||||||||||||| ||
seq2  GTAATGTCCTCTTTTCTGTCAGTCAGCTTTGGGACGTTTGCATCATG-AT  1095

seq1  AAGCTTTTCTCCTTTCAGCCCCCCGCCCCGGTTTTC  1135
      |||| ||||||| ||||||||||  ||| |||||||
seq2  AAGC-TTTCTCC-TTCAGCCCCCGCCCCGGGTTTTC  1129

seq1: chr10_83223075_83223397
seq2: B6Ng01-131A08.g_74_396 (reverse)

seq1  TCCTCCCAACCTCTTCTTCATATACCTCCCCTCCCAAGGTCATCTCTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCAACCTCTTCTTCATATACCTCCCCTCCCAAGGTCATCTCTTGT  50

seq1  CGGGTCAGTCCTGGAGTTGGTAGAGACTGAGAAGTTTCCAGATGGAGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTCAGTCCTGGAGTTGGTAGAGACTGAGAAGTTTCCAGATGGAGACT  100

seq1  GAGTAGTTTCCTTGCTGGAGGGCTGGGACACGCAGGGTCTACTTCTTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGTTTCCTTGCTGGAGGGCTGGGACACGCAGGGTCTACTTCTTAAG  150

seq1  GGAAGTCACAGCAGCCTTAGAATTGTTCTCTGGGGAGTGGCTCATCAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCACAGCAGCCTTAGAATTGTTCTCTGGGGAGTGGCTCATCAGAG  200

seq1  AGGCAGCATAGAGATTTATAAAGACTGGAATCCACCCCTCACCCCCCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCATAGAGATTTATAAAGACTGGAATCCACCCCTCACCCCCCAGC  250

seq1  TCCTGAAAATTCACCAAGGAATTTTTTAAGTCTAGTATTTATTTGAATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAAATTCACCAAGGAATTTTTTAAGTCTAGTATTTATTTGAATAG  300

seq1  AGTGCCCTCCCCTTCCCCACACA  323
      |||||||||||||||||||||||
seq2  AGTGCCCTCCCCTTCCCCACACA  323