BAC Information

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BAC

Clone NameB6Ng01-132G09
Chromosome10 (Build37)
Map Location 3,937,426 - 4,007,487
singlet/doubletdoublet
Overlap geneLOC100041224
Upstream geneCnksr3, Oprm1, A130090K04Rik, LOC237252
Downstream geneRgs17, Mtrf1l, Fbxo5, LOC666395, Vip, Myct1, Syne1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132G09.bB6Ng01-132G09.g
ACCDH933210DH933211
length1,119670
definitionDH933210|Mus musculus domesticus DNA, BAC clone: B6Ng01-132G09, 5' end.DH933211|Mus musculus domesticus DNA, BAC clone: B6Ng01-132G09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,937,426 - 3,938,217)(4,006,819 - 4,007,487)
sequence
gaattctttgtttggctctgaaccccatattttaatggggttattttaat
ttctggagtccagcttcttgagctctttgtatatattggatattagcccc
gtatcagatttagcattggtaaaaatcctttcccaatctgttggtggcct
ttttgttttattgacagtatctttttccctacagaagctttgcagtttta
tgaggtcccatttgtcaattcttgatcttacagcacaagtcattgttgtt
ttgtttaggaatttttcccctgtgcccatatcttcgaggattttccccac
tttctcctctataaatatcagtgtctctacttttatgtggagttctttga
tccacttagacttgagctttgtacaaggagataagaatggatcaattcac
attcttctacatgataactgccagttgtgctagcaccatttgttgaaaat
gctgtcttcttcccactggatggttttagctcccttgtcaaagatcaagt
aaccataggtgtgtggattcatttctgggtcttcaattctattccattga
tctacctgtctgtcattgtaccagtaccatgcagtttttatcacaatttc
tctgtagtacagcttaatgtcaggcatggtgattccacccgaggttcttt
tattgttgaaaatagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgccctttctatctcagtgaagaattgaattggaatttt
gatggggattacattgaatctgtagattgctttcggcaggatagccattt
tcactcaattaatcctgccaatccatgagcatgggagatctctctcaagg
aagcactagttccatgagtagcacagagtaaatgttattttagcaaacta
ttcatatctcttatatctagttggccaaataagctctacaggtaacccaa
gcaaaggagctgggaaatctcattgcaaaggagaggagcatacagtactg
ataataatatgagttgtcacataccacaccattaatattcatgttgttcc
ggattcacagttagctgcttagcaatgccatggctgagaattaaacctgt
cccgttaaagctatgctgc

gaattcacacactaagagggaagttatgtgagatactgttcctgtttcac
catgcacaggaaaacacagactttgctctctgtgcatagagagttacact
gagcaaatacaagtaacttgggggtctgtagcaactgactgtacagaaag
tacggacagggaaagactattgtatggcacactaggcaaactcttggtaa
gggctattgacatactaaaaactccacagctgaagtggctttttaatatt
tattttttggattggaaatatttcccttgtatttctttaagtgagttatt
aaagaccttcttgatgtcttctaccatcatcatgagatatgcctttaaat
ccgggtctaggttttcaggtgtgttggggtgccctggactggctgaggtg
ggagtcctgggttctgatgatggtgagcggtcttggtttctgttagtaag
attcttacatctgcctttcatcatctgttaaactctggagtcagttgtta
tagttgtctctggttagagcttgttcctctcgtgattctgttattctcta
ccagcagacctgtctttactagaaaaaaatgacaagaggccactggagtg
tttaaagatatatttctacagatctctctctctctctctctctctctctc
tctctctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_3937426_3938217
seq2: B6Ng01-132G09.b_388_1161

seq1  TTTGATCCACTTAGACTTGAGCTTTGTACAAGGAGATAAGAATGGATCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCCACTTAGACTTGAGCTTTGTACAAGGAGATAAGAATGGATCAA  50

seq1  TTCACATTCTTCTACATGATAACTGCCAGTTGTGCTAGCACCATTTGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATTCTTCTACATGATAACTGCCAGTTGTGCTAGCACCATTTGTTG  100

seq1  AAAATGCTGTCTTCTTCCCACTGGATGGTTTTAGCTCCCTTGTCAAAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCTGTCTTCTTCCCACTGGATGGTTTTAGCTCCCTTGTCAAAGAT  150

seq1  CAAGTAACCATAGGTGTGTGGATTCATTTCTGGGTCTTCAATTCTATTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAACCATAGGTGTGTGGATTCATTTCTGGGTCTTCAATTCTATTCC  200

seq1  ATTGATCTACCTGTCTGTCATTGTACCAGTACCATGCAGTTTTTATCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATCTACCTGTCTGTCATTGTACCAGTACCATGCAGTTTTTATCACA  250

seq1  ATTTCTCTGTAGTACAGCTTAATGTCAGGCATGGTGATTCCACCCGAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTGTAGTACAGCTTAATGTCAGGCATGGTGATTCCACCCGAGGT  300

seq1  TCTTTTATTGTTGAAAATAGTTTTTGCTATCCTAGGTTTTTTGTTATTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATTGTTGAAAATAGTTTTTGCTATCCTAGGTTTTTTGTTATTCC  350

seq1  AGATGAATTTGCAAATTGCCCTTTCTATCTCAGTGAAGAATTGAATTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAATTTGCAAATTGCCCTTTCTATCTCAGTGAAGAATTGAATTGGA  400

seq1  ATTTTGATGGGGATTACATTGAATCTGTAGATTGCTTTCGGCAGGATAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGATGGGGATTACATTGAATCTGTAGATTGCTTTCGGCAGGATAGC  450

seq1  CATTTTCACTCAATTAATCCTGCCAATCCATGAGCATGGGAGATCTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCACTCAATTAATCCTGCCAATCCATGAGCATGGGAGATCTCTCT  500

seq1  CAAGGAAGCACTAGTTCCATGAGTAGCACAGAGTAAATGTTATTTTAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAAGGAAGCACTAGTTCCATGAGTAGCACAGAGTAAATGTTATTTTA-GC  549

seq1  AAACTATTCATATCTCTTATTATCTAGTTGGCCAAAATAAGCTCTACAGG  600
      ||||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  AAACTATTCATATCTCTTA-TATCTAGTTGGCC-AAATAAGCTCTACAGG  597

seq1  TAACCCAAGCAAAGGAGCTGGGAAATCTCATTGCAAAGGAGAGGAGCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAACCCAAGCAAAGGAGCTGGGAAATCTCATTGCAAAGGAGAGGAGCAT-  646

seq1  ACAGTACTGATTAAATAATAATGAGTTTGTTCACAATAACCACACCATTA  700
      |||||||||||  |||||| |||||||   |||||   ||||||||||||
seq2  ACAGTACTGAT--AATAAT-ATGAGTT--GTCACA--TACCACACCATTA  689

seq1  ATATCAATGTATGTTCCAGATTCACAGTTAGCTGGCCTAAGC-ATGCCAT  749
      ||||  |||| |||||| ||||||||||||||||  || ||| |||||||
seq2  ATATTCATGT-TGTTCCGGATTCACAGTTAGCTG--CTTAGCAATGCCAT  736

seq1  GGTCTGAGAATTTAGAGAGCTGTCCGGTAAAAAGCTATGCTGC  792
      || |||||||||   | | |||||| ||  |||||||||||||
seq2  GG-CTGAGAATT---AAACCTGTCCCGT-TAAAGCTATGCTGC  774


seq1: chr10_4006819_4007487
seq2: B6Ng01-132G09.g_65_734 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATC  50

seq1  TGTAG-AATATATCTTTAAACACTCCAGTGGCCTCTTGTCATTTTTTTCT  99
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAATATATCTTTAAACACTCCAGTGGCCTCTTGTCATTTTTTTCT  100

seq1  AGTAAAGACAGGTCTGCTGGTAGAGAATAACAGAATCACGAGAGGAACAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGACAGGTCTGCTGGTAGAGAATAACAGAATCACGAGAGGAACAA  150

seq1  GCTCTAACCAGAGACAACTATAACAACTGACTCCAGAGTTTAACAGATGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAACCAGAGACAACTATAACAACTGACTCCAGAGTTTAACAGATGA  200

seq1  TGAAAGGCAGATGTAAGAATCTTACTAACAGAAACCAAGACCGCTCACCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGCAGATGTAAGAATCTTACTAACAGAAACCAAGACCGCTCACCA  250

seq1  TCATCAGAACCCAGGACTCCCACCTCAGCCAGTCCAGGGCACCCCAACAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGAACCCAGGACTCCCACCTCAGCCAGTCCAGGGCACCCCAACAC  300

seq1  ACCTGAAAACCTAGACCCGGATTTAAAGGCATATCTCATGATGATGGTAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAAACCTAGACCCGGATTTAAAGGCATATCTCATGATGATGGTAG  350

seq1  AAGACATCAAGAAGGTCTTTAATAACTCACTTAAAGAAATACAAGGGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATCAAGAAGGTCTTTAATAACTCACTTAAAGAAATACAAGGGAAA  400

seq1  TATTTCCAATCCAAAAAATAAATATTAAAAAGCCACTTCAGCTGTGGAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCAATCCAAAAAATAAATATTAAAAAGCCACTTCAGCTGTGGAGT  450

seq1  TTTTAGTATGTCAATAGCCCTTACCAAGAGTTTGCCTAGTGTGCCATACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTATGTCAATAGCCCTTACCAAGAGTTTGCCTAGTGTGCCATACA  500

seq1  ATAGTCTTTCCCTGTCCGTACTTTCTGTACAGTCAGTTGCTACAGACCCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTTTCCCTGTCCGTACTTTCTGTACAGTCAGTTGCTACAGACCCC  550

seq1  CAAGTTACTTGTATTTGCTCAGTGTAACTCTCTATGCACAGAGAGCAAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTACTTGTATTTGCTCAGTGTAACTCTCTATGCACAGAGAGCAAAG  600

seq1  TCTGTGTTTTCCTGTGCATGGTGAAACAGGAACAGTATCTCACATAACTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTTTCCTGTGCATGGTGAAACAGGAACAGTATCTCACATAACTT  650

seq1  CCCTCTTAGTGTGTGAATTC  669
      ||||||||||||||||||||
seq2  CCCTCTTAGTGTGTGAATTC  670


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