BAC Information

Click to search

BAC

Clone NameB6Ng01-132I01
Chromosome10 (Build37)
Map Location 79,753,662 - 79,754,115
singlet/doubletsinglet
Overlap genenone
Upstream geneAJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1
Downstream geneRps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta, Thop1, Creb3l3, Map2k2, Zbtb7a, Pias4, Eef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132I01.bB6Ng01-132I01.g
ACCDH933288DH933289
length1,230336
definitionDH933288|Mus musculus domesticus DNA, BAC clone: B6Ng01-132I01, 5' end.DH933289|Mus musculus domesticus DNA, BAC clone: B6Ng01-132I01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacataaatatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggtgagaagctggaagcaatcccactaaa
atcagggactagacaaggctgtccactttctccctacctattcaacattg
tacttgaagttctagccagagcaatttgacaacaaaaggagatcaagggt
atacaaattggaaaggaagaagtcaaaatataactttttgcagatgatat
gatagtatatataaatgaccctaaaaattccaccagagaactcctaaacc
tgataaacagcttcagtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaaggataaacaggctgagagagaaattag
ggaaacaacacccttctcaatagtcacaaatacataaaataccttggtgt
gactctaactaaggaagtgaaagatctgaatgataagaacttcaagtctc
tgaagaaaaaaattaaagaagatctcagaagatggaaagatctcccatgc
tcatggatgggcaggatcaatatagtaaaaatggctatcttgccaaaagc
aatccacagattcaatgcaatccccatcaaaattccaactcaattctcca
atgaataaaaagggcaatctgcaaatccatctggaataacaaaaaaccta
ggatagcaaaaactcttctcaaggataaaagaatctctggtggaatcacc
atgcctgacctaaagctgtactacagagcaatagtgataaaaactgaatg
gtactgatatagagacagacaagtagaccaataaaatagaattgaagacc
cagaaatgaacccacacacctatggtcacttgatctttgacaagggagct
aaaaccatccagtggaaaaaaacacagcattttcaacaaatggtgctggc
acactgggtgattatcatgtagaagaatgagaattgatccattcctatct
cttgtactgaggtcaatctaagtggatcaaggaactcacgtaaaacagag
acgctgaaacttataaggagtaggtgggggaaaagcctcgaagattgggc
acaaggacaaatctatagaacagcatggctggtgctgtagaatggaaatc
gacaatggaccttaattgcagcttctgtaaggcaaagaccggtcatagac
acaaagggccacaacaatgggggagaggat
ctcccttagatcaaccccaagacaggagacagccacaggctgatatatat
tgagataaggtctcacactgtagccctgactggcctaaaactcactatgt
agacctcaaactcacagagatccactttcctctgcctccaaaatgctagg
ataaacatgcaaaccactacttctagcgtcctttaaaaaattatttgggg
gggggcatggtggcgcacgcctttaatcccagcactcgggaggcagaggt
aggtgatttctgatttcgaggccagcctggtctacagagtgagttccagg
acagccagggctacacagggaaaccctgtctcgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_79753662_79754115
seq2: B6Ng01-132I01.g_201_408 (reverse)

seq1  TTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTT  50
      ||||||||||||||||| |||| |||||||||||||||||||||||||| 
seq2  TTTCGAGACAGGGTTTCCCTGTGTAGCCCTGGCTGTCCTGGAACTCACTC  50

seq1  TGTAGACCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCA  100
      ||||||||||||||||||| || |||||||| ||||| ||||||||||| 
seq2  TGTAGACCAGGCTGGCCTCGAAATCAGAAAT-CACCTACCTCTGCCTCCC  99

seq1  GAGTACTGGAATTAAAGGCGTGCGCCACCATGCCCGGC-----TTGGTTT  145
      |||| |||| |||||||||||||||||||||||||  |      |  |||
seq2  GAGTGCTGGGATTAAAGGCGTGCGCCACCATGCCCCCCCCCAAATAATTT  149

seq1  TTTCACATGATGTTTCTCTATGCAGCCCTGGCTGTCCTGGCCACTACTGT  195
      ||| | | ||     | ||| | ||   ||| |    ||  ||    |||
seq2  TTT-AAAGGA-----CGCTA-GAAGTAGTGGTT----TG--CA----TGT  182

seq1  CCTACCTCTCCTCTCTCTTTAAAG--ACAGGGATGGTCTTTCTATGCATC  243
            | ||||  |  |||  ||  | |||                   
seq2  -----TTATCCTAGCATTTTGGAGGCAGAGG-------------------  208

seq1  CCTGGCTGGCCTGGAATTCACAGACCGCTCTGCCTTCTGTGTGCTACACG  293
                                                        
seq2  --------------------------------------------------  208

seq1  TGCCTCTGCTGGACTTTGCTACTTCGTGGGCTTCTTTTTCTTCCATCCTT  343
                                                        
seq2  --------------------------------------------------  208

seq1  CTCCACCTTTTTCCTCCTAGCCTTCCAACCCCCAACACTAGATAAGAGAG  393
                                                        
seq2  --------------------------------------------------  208

seq1  AAAATGTTGGAGCTGGGCGTGGTGGTGCACACCTTTAATCCCAGCATTTG  443
                                                        
seq2  --------------------------------------------------  208

seq1  GGAGGCAGAGG  454
                 
seq2  -----------  208